TB-Profiler result

Run: ERR4819706
Summary

Run ID: ERR4819706

Sample name:

Date: 01-04-2023 16:15:36

Number of reads: 1902268

Percentage reads mapped: 81.57

Strain: lineage4.3.4.2

Drug-resistance: MDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 1.0
lineage4.3.4 Euro-American (LAM) LAM RD174 1.0
lineage4.3.4.2 Euro-American (LAM) LAM1;LAM4;LAM11 RD174 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 0.24 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.18 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.25 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.12 kanamycin, capreomycin, aminoglycosides, amikacin
fabG1 1673425 c.-15C>T upstream_gene_variant 1.0 isoniazid, ethionamide
inhA 1674481 p.Ser94Ala missense_variant 1.0 isoniazid, ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6817 c.-485G>A upstream_gene_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.33
rpoB 761037 c.1231T>C synonymous_variant 0.12
rpoB 761051 c.1245G>C synonymous_variant 0.17
rpoB 761054 c.1248G>C synonymous_variant 0.17
rpoB 761057 c.1251G>C synonymous_variant 0.17
rpoB 761060 c.1254C>G synonymous_variant 0.17
rpoB 761084 c.1278C>A synonymous_variant 0.17
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.16
rpoB 761096 c.1290G>C synonymous_variant 0.17
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.17
rpoB 761102 c.1296A>G synonymous_variant 0.19
rpoB 761123 c.1317G>T synonymous_variant 0.19
rpoB 761132 c.1326G>C synonymous_variant 0.22
rpoB 761133 c.1327T>C synonymous_variant 0.24
rpoB 761150 c.1344A>C synonymous_variant 0.19
rpoB 761159 c.1353G>C synonymous_variant 0.21
rpoB 761165 c.1359G>C synonymous_variant 0.23
rpoB 761174 c.1368T>C synonymous_variant 0.16
rpoB 761180 c.1374A>C synonymous_variant 0.15
rpoB 761186 p.Glu460Asp missense_variant 0.14
rpoB 762149 c.2343G>C synonymous_variant 0.12
rpoB 762156 p.Val784Ile missense_variant 0.13
rpoB 762167 c.2361T>C synonymous_variant 0.14
rpoB 762194 c.2388G>C synonymous_variant 0.12
rpoB 762212 c.2406G>C synonymous_variant 0.13
rpoB 762233 c.2427G>C synonymous_variant 0.12
rpoB 762234 p.Pro810Ser missense_variant 0.12
rpoB 762239 c.2433G>A synonymous_variant 0.12
rpoB 762245 c.2439G>C synonymous_variant 0.12
rpoC 763043 c.-327G>C upstream_gene_variant 0.11
rpoC 763053 c.-317T>C upstream_gene_variant 0.11
rpoC 763531 c.162G>C synonymous_variant 0.12
rpoC 763534 c.165T>C synonymous_variant 0.11
rpoC 763552 p.Tyr61* stop_gained 0.11
rpoC 763570 c.201G>C synonymous_variant 0.16
rpoC 763578 p.Phe70Tyr missense_variant 0.15
rpoC 763598 p.Arg77Ser missense_variant 0.13
rpoC 763657 p.Glu96Asp missense_variant 0.12
rpoC 763660 c.291T>G synonymous_variant 0.11
rpoC 763666 c.297G>C synonymous_variant 0.12
rpoC 763699 c.330G>T synonymous_variant 0.16
rpoC 763708 c.339G>C synonymous_variant 0.15
rpoC 763714 c.345G>C synonymous_variant 0.12
rpoC 763717 c.348T>C synonymous_variant 0.12
rpoC 763718 p.Leu117Val missense_variant 0.12
rpoC 763751 p.Ile128Val missense_variant 0.12
rpoC 764485 c.1116G>C synonymous_variant 0.2
rpoC 764491 c.1122G>T synonymous_variant 0.19
rpoC 764503 c.1134G>T synonymous_variant 0.2
rpoC 764509 c.1140G>C synonymous_variant 0.19
rpoC 764512 c.1143G>C synonymous_variant 0.21
rpoC 764521 c.1152T>C synonymous_variant 0.25
rpoC 764536 c.1167G>C synonymous_variant 0.26
rpoC 764543 p.Thr392Ala missense_variant 0.25
rpoC 764548 c.1179G>T synonymous_variant 0.22
rpoC 764551 c.1182G>C synonymous_variant 0.24
rpoC 764573 p.Leu402Ile missense_variant 0.32
rpoC 764578 c.1209C>G synonymous_variant 0.32
rpoC 764581 c.1212T>C synonymous_variant 0.31
rpoC 764582 p.Leu405Met missense_variant 0.33
rpoC 764602 c.1233C>T synonymous_variant 0.37
rpoC 764605 c.1236G>T synonymous_variant 0.38
rpoC 764611 c.1242G>T synonymous_variant 0.35
rpoC 764632 c.1263T>A synonymous_variant 0.3
rpoC 764647 c.1278C>T synonymous_variant 0.27
rpoC 764650 c.1281G>T synonymous_variant 0.27
rpoC 764653 c.1284G>C synonymous_variant 0.26
rpoC 764656 c.1287C>G synonymous_variant 0.25
rpoC 764662 c.1293G>C synonymous_variant 0.26
rpoC 764677 c.1308C>G synonymous_variant 0.23
rpoC 764678 p.Lys437Gln missense_variant 0.23
rpoC 764683 c.1314G>C synonymous_variant 0.22
rpoC 764692 c.1323C>T synonymous_variant 0.22
rpoC 764705 p.Leu446Ala missense_variant 0.19
rpoC 764713 c.1344G>C synonymous_variant 0.17
rpoC 764995 c.1626C>G synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1304848 p.Asn640Tyr missense_variant 0.29
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.79
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.82
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.18
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.18
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.8
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.19
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.2
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.73
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.73
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.73
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.72
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.7
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.32
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.63
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.5
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.53
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.8
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.71
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.71
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.67
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.6
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.4
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.5
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.5
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.5
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.5
rrs 1472449 n.604C>T non_coding_transcript_exon_variant 0.5
rrs 1472450 n.605A>C non_coding_transcript_exon_variant 0.5
rrs 1472451 n.606C>T non_coding_transcript_exon_variant 0.5
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.67
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.67
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.5
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.67
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.67
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.31
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.47
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.24
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.24
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.26
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.25
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.23
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.23
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.52
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.29
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.19
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.29
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.23
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.19
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.19
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.89
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.9
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.46
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.3
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.17
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.13
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.3
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.13
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.6
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.92
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.19
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.72
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.19
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.68
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.92
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.7
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.71
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.19
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.47
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.25
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.7
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.3
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.25
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.25
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.23
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.12
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.24
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.68
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.32
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.33
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.67
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.33
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.43
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.49
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.43
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.96
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.93
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.98
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.98
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.4
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.4
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.49
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.54
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.99
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.97
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.98
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.97
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.49
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.51
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.97
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.96
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.97
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.53
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.43
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.99
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.99
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.99
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.42
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.94
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.65
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.56
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.96
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.96
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.65
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.68
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.76
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.94
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.94
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.95
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.82
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.82
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.13
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.85
rrl 1473384 n.-274A>G upstream_gene_variant 0.41
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.75
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.75
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.67
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.67
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.5
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.75
rrl 1474483 n.826C>T non_coding_transcript_exon_variant 0.5
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.67
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 0.67
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 0.67
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 1.0
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.67
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.67
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.67
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.67
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 1.0
rrl 1474551 n.894G>A non_coding_transcript_exon_variant 0.67
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 1.0
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474706 n.1049G>A non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060A>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.8
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.67
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.57
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 1.0
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.6
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.6
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.4
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.8
rrl 1475760 n.2103C>T non_coding_transcript_exon_variant 0.75
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.8
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.8
rrl 1475764 n.2107A>G non_coding_transcript_exon_variant 1.0
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.71
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.71
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.29
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.75
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.67
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.67
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.29
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.29
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.22
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.5
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.2
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.4
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.67
rrl 1476194 n.2537A>T non_coding_transcript_exon_variant 0.67
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.8
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.4
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.4
rrl 1476207 n.2550T>C non_coding_transcript_exon_variant 0.44
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.7
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.7
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.82
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.44
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.89
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.56
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.89
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.89
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 0.33
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 0.43
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.5
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.67
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.5
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.67
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.33
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.33
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.33
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.67
rrl 1476306 n.2649A>G non_coding_transcript_exon_variant 0.33
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.33
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.33
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.4
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.57
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.28
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.96
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.95
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.98
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.83
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.93
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.97
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.95
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.97
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.65
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.94
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.47
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.82
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.91
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.82
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.91
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.91
rrl 1476542 n.2885T>C non_coding_transcript_exon_variant 0.67
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.14
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.5
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.38
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.5
rpsA 1833661 c.120A>G synonymous_variant 0.12
rpsA 1833667 c.126C>T synonymous_variant 0.13
rpsA 1833668 p.Ile43Val missense_variant 0.12
rpsA 1833676 c.135A>G synonymous_variant 0.11
rpsA 1833679 c.138G>C synonymous_variant 0.11
rpsA 1833685 c.144G>C synonymous_variant 0.1
rpsA 1833694 c.153G>C synonymous_variant 0.11
rpsA 1833721 c.180A>G synonymous_variant 0.11
rpsA 1833724 c.183C>T synonymous_variant 0.11
rpsA 1833727 c.186G>C synonymous_variant 0.11
rpsA 1833732 p.Pro64Leu missense_variant 0.12
rpsA 1833734 p.Ala65Ser missense_variant 0.12
rpsA 1833742 c.201A>G synonymous_variant 0.12
rpsA 1833764 p.Asp75Asn missense_variant 0.12
rpsA 1833970 c.429G>T synonymous_variant 0.15
rpsA 1833976 c.435C>T synonymous_variant 0.12
rpsA 1833979 c.438T>C synonymous_variant 0.13
rpsA 1833994 c.453G>C synonymous_variant 0.12
rpsA 1833997 c.456G>C synonymous_variant 0.11
rpsA 1834012 c.471G>C synonymous_variant 0.12
rpsA 1834015 c.474G>C synonymous_variant 0.11
rpsA 1834024 c.483G>C synonymous_variant 0.11
rpsA 1834025 p.Gln162Ala missense_variant 0.11
rpsA 1834040 p.Lys167Gln missense_variant 0.13
rpsA 1834240 c.699T>C synonymous_variant 0.11
rpsA 1834249 c.708T>C synonymous_variant 0.14
rpsA 1834261 c.720A>G synonymous_variant 0.13
rpsA 1834264 c.723G>T synonymous_variant 0.11
rpsA 1834294 c.753G>C synonymous_variant 0.16
rpsA 1834298 p.Gln253Glu missense_variant 0.16
rpsA 1834306 c.765T>C synonymous_variant 0.16
rpsA 1834307 p.Asp256Gln missense_variant 0.16
rpsA 1834312 c.771G>A synonymous_variant 0.16
rpsA 1834327 c.786G>T synonymous_variant 0.2
rpsA 1834345 c.804C>T synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.15
rpsA 1834354 c.813G>C synonymous_variant 0.15
rpsA 1834357 c.816T>C synonymous_variant 0.15
rpsA 1834360 c.819G>C synonymous_variant 0.15
rpsA 1834361 c.820T>C synonymous_variant 0.15
rpsA 1834366 c.825A>C synonymous_variant 0.15
rpsA 1834375 c.834G>C synonymous_variant 0.15
rpsA 1834378 c.837T>C synonymous_variant 0.15
rpsA 1834387 c.846C>T synonymous_variant 0.12
rpsA 1834397 p.His286Ala missense_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612009 p.Ala370Thr missense_variant 1.0
clpC1 4038287 c.2418C>T synonymous_variant 1.0
embC 4239763 c.-100C>T upstream_gene_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0