Rv0668 - c.1182G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
5 RR-TB
24 HR-TB
15 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.9 | 40 |
| 11 | |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 4 |
| lineage4.1.2.1 | 5 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.3.4.2.1 | 3 |
| lineage4.5 | 1 |
| La1.7;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1 | 8 |
| lineage4.1.1.3 | 3 |
| La3 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage3;lineage4 | 1 |
| lineage2.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage4.6.1.2 | 5 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.8.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage3.1.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3.1 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage5 | 1 |
| lineage4.3.4 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 129 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR22249687 | Sensitive | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1175074 | Other | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR4811075 | Other | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR323048 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1173363 | Other | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR1196677 | Other | lineage2.2 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR038289 | Other | lineage4.3.3 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR212123 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR2660498 | Sensitive | lineage4.3.4.2.1 | None | ERR4972483 | Pre-XDR-TB | lineage4.1.2.1.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR29093909 | Other | lineage4.9 | None | ERR11466174 | Other | lineage4.8 | None | ERR3283032 | Other | lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR29050928 | Other | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR4818536 | Other | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1173633 | Other | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4811142 | RR-TB | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR1023509 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR4814748 | Other | lineage4.8 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR6359082 | Other | lineage4.9 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1172857 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None |
|---|
