TB-Profiler result

Run: ERR4814748
Summary

Run ID: ERR4814748

Sample name:

Date: 01-04-2023 13:28:12

Number of reads: 1295576

Percentage reads mapped: 62.97

Strain: lineage4.8

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.11 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.66 streptomycin
ethA 4327255 c.218delA frameshift_variant 0.1 ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5706 p.Leu156Arg missense_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoB 761552 c.1746G>C synonymous_variant 0.1
rpoB 761555 c.1749G>C synonymous_variant 0.11
rpoB 761559 p.Thr585Ala missense_variant 0.1
rpoB 761567 p.Met587Ile missense_variant 0.1
rpoB 761600 c.1794T>A synonymous_variant 0.11
rpoB 761612 c.1806G>C synonymous_variant 0.12
rpoB 761615 c.1809A>G synonymous_variant 0.1
rpoB 761627 c.1821C>T synonymous_variant 0.13
rpoB 761633 c.1827G>C synonymous_variant 0.12
rpoB 762212 c.2406G>C synonymous_variant 0.1
rpoB 762233 c.2427G>C synonymous_variant 0.12
rpoB 762236 c.2430G>C synonymous_variant 0.12
rpoB 762245 c.2439G>C synonymous_variant 0.14
rpoB 762254 c.2448T>C synonymous_variant 0.15
rpoB 762879 p.Met1025Leu missense_variant 0.11
rpoC 762902 c.-468C>T upstream_gene_variant 0.12
rpoC 762911 c.-459C>T upstream_gene_variant 0.11
rpoC 762956 c.-414G>C upstream_gene_variant 0.11
rpoC 763053 c.-317T>C upstream_gene_variant 0.14
rpoC 763070 c.-300T>C upstream_gene_variant 0.14
rpoB 763077 p.Val1091Thr missense_variant 0.16
rpoC 763103 c.-267G>C upstream_gene_variant 0.12
rpoC 763115 c.-255T>C upstream_gene_variant 0.12
rpoB 763119 p.Asn1105Asp missense_variant 0.12
rpoC 763127 c.-243G>C upstream_gene_variant 0.13
rpoC 763133 c.-237G>C upstream_gene_variant 0.13
rpoC 763675 c.306C>G synonymous_variant 0.16
rpoC 763699 c.330G>T synonymous_variant 0.32
rpoC 763708 c.339G>C synonymous_variant 0.33
rpoC 763714 c.345G>C synonymous_variant 0.29
rpoC 763717 c.348T>C synonymous_variant 0.3
rpoC 763718 p.Leu117Val missense_variant 0.29
rpoC 763723 c.354G>C synonymous_variant 0.26
rpoC 763724 p.Asp119Asn missense_variant 0.26
rpoC 763729 c.360G>C synonymous_variant 0.26
rpoC 763732 c.363C>G synonymous_variant 0.27
rpoC 763735 c.366G>C synonymous_variant 0.27
rpoC 763744 c.375G>C synonymous_variant 0.23
rpoC 763751 p.Ile128Val missense_variant 0.23
rpoC 763765 c.396T>C synonymous_variant 0.15
rpoC 763772 p.Val135Met missense_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.17
rpoC 764491 c.1122G>T synonymous_variant 0.18
rpoC 764503 c.1134G>T synonymous_variant 0.4
rpoC 764509 c.1140G>C synonymous_variant 0.43
rpoC 764512 c.1143G>C synonymous_variant 0.37
rpoC 764536 c.1167G>C synonymous_variant 0.48
rpoC 764543 p.Thr392Ala missense_variant 0.48
rpoC 764548 c.1179G>C synonymous_variant 0.43
rpoC 764551 c.1182G>C synonymous_variant 0.42
rpoC 764573 p.Leu402Ile missense_variant 0.4
rpoC 764578 c.1209C>G synonymous_variant 0.37
rpoC 764581 c.1212T>C synonymous_variant 0.37
rpoC 764582 p.Leu405Met missense_variant 0.36
rpoC 764602 c.1233C>T synonymous_variant 0.39
rpoC 764605 c.1236G>T synonymous_variant 0.39
rpoC 764611 c.1242G>T synonymous_variant 0.43
rpoC 764632 c.1263T>A synonymous_variant 0.37
rpoC 764647 c.1278C>T synonymous_variant 0.38
rpoC 764650 c.1281G>C synonymous_variant 0.31
rpoC 764653 c.1284G>C synonymous_variant 0.33
rpoC 764656 c.1287C>T synonymous_variant 0.33
rpoC 764662 c.1293G>C synonymous_variant 0.32
rpoC 764677 c.1308C>G synonymous_variant 0.29
rpoC 764678 p.Lys437Gln missense_variant 0.32
rpoC 764683 c.1314G>C synonymous_variant 0.24
rpoC 764692 c.1323C>T synonymous_variant 0.27
rpoC 764705 p.Leu446Val missense_variant 0.12
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781745 c.186G>A synonymous_variant 0.12
rpsL 781751 c.192G>C synonymous_variant 0.17
rpsL 781760 c.201T>C synonymous_variant 0.2
rpsL 781766 c.207C>T synonymous_variant 0.26
rpsL 781772 c.213C>T synonymous_variant 0.21
rpsL 781796 p.Met79Ile missense_variant 0.27
rpsL 781802 c.243G>C synonymous_variant 0.27
rpsL 781811 c.252C>T synonymous_variant 0.29
rpsL 781814 c.255C>T synonymous_variant 0.27
rpsL 781817 c.258G>T synonymous_variant 0.25
rpsL 781832 c.273T>C synonymous_variant 0.21
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471845 n.-1G>T upstream_gene_variant 0.14
rrs 1471853 n.8T>C non_coding_transcript_exon_variant 0.13
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.22
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.36
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.12
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.3
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.6
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.11
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.28
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.43
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.43
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.44
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.24
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 0.22
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.91
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.18
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.48
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.62
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.49
rrs 1472181 n.336G>A non_coding_transcript_exon_variant 0.13
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 0.11
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.53
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.91
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.38
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.47
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.33
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.5
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.5
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.5
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.5
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.5
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.4
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.33
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.8
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.67
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.67
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.83
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.67
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.13
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.62
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.62
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.71
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.75
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.76
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.71
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.15
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.66
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.75
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.59
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.38
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.95
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.99
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.23
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.7
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.69
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.62
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.37
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.92
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.93
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.48
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.45
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.45
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.44
rrs 1472673 n.828T>A non_coding_transcript_exon_variant 0.71
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.6
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.71
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.62
rrs 1472681 n.837_838delTT non_coding_transcript_exon_variant 0.83
rrs 1472687 n.843dupT non_coding_transcript_exon_variant 0.8
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.64
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.12
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.29
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.15
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.67
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.28
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.69
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.6
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.6
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.61
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.41
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.53
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.49
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.84
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.64
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.83
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 0.57
rrs 1472875 n.1030T>C non_coding_transcript_exon_variant 0.33
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.84
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.25
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.19
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.5
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.25
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.75
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.94
rrs 1472958 n.1113A>C non_coding_transcript_exon_variant 0.15
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.15
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.15
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.6
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.34
rrs 1472988 n.1143T>G non_coding_transcript_exon_variant 0.12
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.3
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.82
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.46
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.1
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.61
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.91
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.85
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.83
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.8
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.58
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.57
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.83
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.85
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.82
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.78
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.78
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.78
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.78
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.3
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.81
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.51
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.57
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.89
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.9
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.52
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.57
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.56
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.74
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.74
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.63
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.55
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.52
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.55
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.12
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.17
rrl 1473836 n.179A>G non_coding_transcript_exon_variant 0.25
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.4
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.4
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.5
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.12
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.87
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.89
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.16
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.89
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 0.88
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.88
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.94
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.5
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.67
rrl 1474634 n.977T>C non_coding_transcript_exon_variant 0.5
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.6
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.4
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.6
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.4
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 0.5
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.5
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.75
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.75
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.75
rrl 1474692 n.1035G>A non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.5
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.33
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.5
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.33
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.75
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.75
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.67
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.4
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.2
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.2
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.18
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.38
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.62
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.5
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.45
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.45
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.42
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.23
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.17
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.27
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.79
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.85
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.9
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.62
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.86
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.81
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.76
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.44
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.2
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.2
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.2
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.19
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.18
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.19
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.2
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.17
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.11
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.17
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.17
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.17
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.17
rpsA 1833684 p.Arg48His missense_variant 0.1
rpsA 1833694 c.153G>C synonymous_variant 0.1
rpsA 1833700 c.159C>T synonymous_variant 0.11
rpsA 1833721 c.180A>G synonymous_variant 0.17
rpsA 1833724 c.183C>T synonymous_variant 0.16
rpsA 1833727 c.186G>C synonymous_variant 0.11
rpsA 1833742 c.201A>G synonymous_variant 0.1
rpsA 1834234 c.693G>C synonymous_variant 0.15
rpsA 1834240 c.699T>C synonymous_variant 0.17
rpsA 1834249 c.708T>C synonymous_variant 0.19
rpsA 1834258 c.717G>A synonymous_variant 0.26
rpsA 1834261 c.720A>G synonymous_variant 0.27
rpsA 1834264 c.723G>C synonymous_variant 0.27
rpsA 1834294 c.753G>C synonymous_variant 0.17
rpsA 1834298 p.Gln253Glu missense_variant 0.17
rpsA 1834306 c.765T>C synonymous_variant 0.13
rpsA 1834307 p.Asp256Gln missense_variant 0.13
rpsA 1834312 c.771G>A synonymous_variant 0.14
rpsA 1834327 c.786G>T synonymous_variant 0.18
rpsA 1834345 c.804C>T synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.16
rpsA 1834411 c.870T>C synonymous_variant 0.16
rpsA 1834435 c.894G>C synonymous_variant 0.12
rpsA 1834451 c.910T>C synonymous_variant 0.16
rpsA 1834459 c.918G>C synonymous_variant 0.16
rpsA 1834465 c.924T>C synonymous_variant 0.13
rpsA 1834468 c.927A>G synonymous_variant 0.14
rpsA 1834474 c.933C>G synonymous_variant 0.14
rpsA 1834486 p.Glu315Asp missense_variant 0.14
rpsA 1834489 c.948T>C synonymous_variant 0.14
rpsA 1834501 c.960G>C synonymous_variant 0.1
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155206 c.906C>T synonymous_variant 0.11
PPE35 2168149 p.Pro822Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv3083 3448322 c.-182G>A upstream_gene_variant 1.0
clpC1 4039994 p.Glu237Asp missense_variant 0.12
clpC1 4040009 c.696C>G synonymous_variant 0.11
clpC1 4040015 c.690G>C synonymous_variant 0.11
clpC1 4040018 c.687G>C synonymous_variant 0.11
clpC1 4040021 c.684A>C synonymous_variant 0.11
clpC1 4040024 c.681A>G synonymous_variant 0.11
clpC1 4040036 c.669C>G synonymous_variant 0.14
clpC1 4040042 c.663C>T synonymous_variant 0.16
clpC1 4040066 c.639G>C synonymous_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0