Rv0682 - c.207C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
98 Sensitive
20 RR-TB
51 HR-TB
21 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 4 |
| lineage4.9 | 112 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.2;lineage4.9 | 3 |
| lineage4.3.4.2.1 | 4 |
| lineage4.7 | 2 |
| lineage4.6.1.2 | 3 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| 3 | |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 9 |
| lineage4.5 | 2 |
| lineage3 | 6 |
| La3;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.1.2.1 | 5 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.3 | 1 |
| lineage4.9;lineage9 | 2 |
| La3;lineage4.9 | 9 |
| lineage4.4.1.1 | 1 |
| lineage5 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4 | 7 |
| lineage4.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.8 | 9 |
| lineage2.2.1 | 18 |
| lineage4.3.4.2 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage5.1.4 | 1 |
| lineage4.6.3;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.2.1.1 | 2 |
| lineage4.9.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2.1 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| La1.7.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.3.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage1.1.2 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 272 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR4821288 | Other | lineage4.7 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4796577 | HR-TB | None | ERR4819241 | Other | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180250 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR3283028 | Other | La3;lineage4 | None | SRR3675522 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR4817204 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR29231174 | Sensitive | lineage3.1.3 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816967 | Other | lineage5 | None | SRR5341330 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4821331 | HR-TB | lineage4.8 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR9634265 | Sensitive | lineage4.3.4.2 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR26159066 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR4817826 | Other | lineage4.5 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675222 | Other | La1.7 | None | ERR3797029 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675265 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR7755703 | HR-TB | lineage4.2.1.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR13285068 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4829208 | Other | lineage4.8 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR7646029 | HR-TB | lineage4.2.1.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4814748 | Other | lineage4.8 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None |
|---|
