TB-Profiler result

Run: ERR4817204
Summary

Run ID: ERR4817204

Sample name:

Date: 01-04-2023 14:51:44

Number of reads: 47592

Percentage reads mapped: 2.52

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761127 p.Ser441Ala missense_variant 1.0 rifampicin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.97 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7394 c.93T>C synonymous_variant 1.0
gyrA 7397 c.96G>C synonymous_variant 1.0
gyrA 7406 c.105G>C synonymous_variant 1.0
gyrA 7410 p.Val37Ile missense_variant 1.0
gyrA 7421 c.120G>A synonymous_variant 1.0
gyrA 7442 c.141G>C synonymous_variant 1.0
gyrA 7443 c.142_144delCTCinsTTG synonymous_variant 1.0
gyrA 7451 c.150C>G synonymous_variant 1.0
gyrA 7457 c.156T>C synonymous_variant 1.0
gyrA 7463 c.162G>C synonymous_variant 1.0
gyrA 7467 p.Leu56Ile missense_variant 1.0
gyrA 7472 c.171T>C synonymous_variant 1.0
gyrA 7475 c.174A>C synonymous_variant 1.0
gyrA 7799 c.498A>G synonymous_variant 1.0
gyrA 7808 c.507G>T synonymous_variant 1.0
gyrA 7814 c.513C>G synonymous_variant 1.0
gyrA 7825 p.Ala175Val missense_variant 1.0
gyrA 7832 c.531G>C synonymous_variant 1.0
gyrA 7835 c.534A>G synonymous_variant 1.0
gyrA 7837 p.Gly179Val missense_variant 1.0
gyrA 7859 c.558A>G synonymous_variant 1.0
gyrA 7862 c.561C>G synonymous_variant 1.0
gyrA 7865 c.564T>C synonymous_variant 1.0
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 760985 c.1179G>C synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761006 c.1200C>G synonymous_variant 1.0
rpoB 761013 p.Val403Ile missense_variant 1.0
rpoB 761027 c.1221A>C synonymous_variant 1.0
rpoB 761036 c.1230G>C synonymous_variant 1.0
rpoB 761037 c.1231T>C synonymous_variant 1.0
rpoB 761046 p.Ile414Val missense_variant 1.0
rpoB 761051 c.1245G>A synonymous_variant 1.0
rpoB 761054 c.1248G>C synonymous_variant 1.0
rpoB 761057 c.1251G>C synonymous_variant 1.0
rpoB 761084 c.1278C>A synonymous_variant 1.0
rpoB 761087 c.1281C>G synonymous_variant 1.0
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 1.0
rpoB 761102 c.1296A>G synonymous_variant 1.0
rpoB 761126 c.1320G>C synonymous_variant 1.0
rpoB 761132 c.1326G>T synonymous_variant 1.0
rpoB 761133 c.1327T>C synonymous_variant 1.0
rpoB 761150 c.1344A>C synonymous_variant 1.0
rpoB 761153 c.1347G>C synonymous_variant 1.0
rpoB 761207 c.1401C>T synonymous_variant 1.0
rpoB 761213 c.1407G>C synonymous_variant 1.0
rpoB 761234 c.1428G>C synonymous_variant 1.0
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761258 c.1452G>A synonymous_variant 1.0
rpoB 761261 c.1455G>C synonymous_variant 1.0
rpoB 761264 c.1458C>G synonymous_variant 1.0
rpoB 761273 c.1467T>C synonymous_variant 1.0
rpoB 761534 c.1728G>C synonymous_variant 1.0
rpoB 761537 c.1731C>G synonymous_variant 1.0
rpoB 761557 p.Ala584Gly missense_variant 0.91
rpoB 761562 p.Ala586Ser missense_variant 1.0
rpoB 761565 p.Met587Leu missense_variant 1.0
rpoB 761570 c.1764T>C synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoB 761600 c.1794T>A synonymous_variant 1.0
rpoB 761612 c.1806G>T synonymous_variant 1.0
rpoB 761615 c.1809A>G synonymous_variant 1.0
rpoB 762832 p.Ser1009Thr missense_variant 1.0
rpoB 762844 p.Phe1013Tyr missense_variant 1.0
rpoB 762849 p.Tyr1015Asp missense_variant 1.0
rpoB 762855 p.Val1017Ile missense_variant 1.0
rpoB 762858 p.Thr1018Ser missense_variant 1.0
rpoC 762863 c.-507T>C upstream_gene_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoC 762920 c.-450C>T upstream_gene_variant 1.0
rpoC 762923 c.-447C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>T upstream_gene_variant 1.0
rpoC 762959 c.-411G>C upstream_gene_variant 1.0
rpoC 762962 c.-408C>T upstream_gene_variant 0.97
rpoC 762983 c.-387C>A upstream_gene_variant 1.0
rpoC 762989 c.-381G>T upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 1.0
rpoB 763017 p.Gln1071Glu missense_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 1.0
rpoC 763052 c.-318G>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763067 c.-303C>G upstream_gene_variant 1.0
rpoB 763075 p.Thr1090Ile missense_variant 1.0
rpoB 763077 p.Val1091Leu missense_variant 1.0
rpoC 763094 c.-276G>C upstream_gene_variant 1.0
rpoC 763103 c.-267G>C upstream_gene_variant 1.0
rpoB 763126 p.Pro1107Gln missense_variant 1.0
rpoC 763142 c.-228C>G upstream_gene_variant 1.0
rpoC 763148 c.-222G>C upstream_gene_variant 1.0
rpoC 763160 c.-210G>C upstream_gene_variant 1.0
rpoB 763161 p.Leu1119Ile missense_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763169 c.-201A>G upstream_gene_variant 1.0
rpoB 763170 p.Leu1122Met missense_variant 1.0
rpoC 763181 c.-189G>C upstream_gene_variant 1.0
rpoC 763187 c.-183C>G upstream_gene_variant 1.0
rpoC 763199 c.-171G>C upstream_gene_variant 1.0
rpoC 763486 c.117T>G synonymous_variant 1.0
rpoC 763507 c.138G>C synonymous_variant 1.0
rpoC 763511 p.Cys48Gly missense_variant 1.0
rpoC 763517 p.Lys50Gln missense_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 1.0
rpoC 763532 p.Thr55Ser missense_variant 1.0
rpoC 763537 c.168C>T synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763551 p.Tyr61Ser missense_variant 1.0
rpoC 763675 c.306C>G synonymous_variant 1.0
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 1.0
rpoC 763708 c.339G>T synonymous_variant 1.0
rpoC 763711 c.342G>C synonymous_variant 1.0
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763723 c.354G>C synonymous_variant 1.0
rpoC 763727 p.Leu120Met missense_variant 1.0
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 763751 p.Ile128Val missense_variant 1.0
rpoC 763765 c.396T>C synonymous_variant 1.0
rpoC 764316 p.Ala316Val missense_variant 1.0
rpoC 764326 c.957G>C synonymous_variant 1.0
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764371 c.1002G>C synonymous_variant 1.0
rpoC 764377 c.1008C>G synonymous_variant 1.0
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 1.0
rpoC 764387 c.1018T>C synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764428 c.1059G>T synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764498 p.Ser377Ala missense_variant 1.0
rpoC 764503 c.1134G>C synonymous_variant 1.0
rpoC 764509 c.1140G>C synonymous_variant 1.0
rpoC 764587 c.1218C>G synonymous_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 1.0
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>C synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764660 p.Val431Ile missense_variant 1.0
rpoC 764706 p.Leu446Gln missense_variant 1.0
rpoC 764740 p.Met457Ile missense_variant 1.0
rpoC 764746 c.1377G>C synonymous_variant 1.0
rpoC 764750 p.Val461Ile missense_variant 1.0
rpoC 764758 c.1389C>G synonymous_variant 1.0
rpoC 764760 p.Asn464Ser missense_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764767 c.1398G>T synonymous_variant 1.0
rpoC 764780 p.Ser471Ala missense_variant 1.0
rpoC 764803 c.1434C>T synonymous_variant 1.0
rpoC 764804 p.Gln479Ser missense_variant 1.0
rpoC 764812 c.1443C>G synonymous_variant 1.0
rpoC 764815 c.1446A>G synonymous_variant 1.0
rpoC 764824 c.1455T>C synonymous_variant 1.0
rpoC 764833 c.1464A>G synonymous_variant 1.0
rpoC 764837 p.Val490Ile missense_variant 1.0
rpoC 764843 p.Ala492Arg missense_variant 1.0
rpoC 764850 p.His494Arg missense_variant 1.0
rpoC 764854 c.1485G>C synonymous_variant 1.0
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpoC 764870 p.Ala501Thr missense_variant 1.0
rpoC 764878 c.1509C>G synonymous_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781805 c.246G>C synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781814 c.255C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rpsL 781829 c.270G>T synonymous_variant 1.0
rpsL 781835 c.276T>C synonymous_variant 1.0
rpsL 781838 c.279G>C synonymous_variant 1.0
rpsL 781841 c.282C>T synonymous_variant 1.0
rpsL 781851 p.Ile98Val missense_variant 1.0
rplC 800648 c.-161A>G upstream_gene_variant 1.0
rplC 800651 c.-158G>C upstream_gene_variant 1.0
rplC 800654 c.-155T>C upstream_gene_variant 1.0
rplC 800667 c.-142_-140delTCGinsAGC upstream_gene_variant 1.0
rplC 800672 c.-137G>C upstream_gene_variant 1.0
rplC 800693 c.-116A>G upstream_gene_variant 1.0
rplC 800702 c.-107G>A upstream_gene_variant 1.0
rplC 800703 c.-106T>C upstream_gene_variant 1.0
rplC 800720 c.-89T>C upstream_gene_variant 1.0
rplC 800723 c.-86C>G upstream_gene_variant 1.0
rplC 800726 c.-83G>C upstream_gene_variant 1.0
rplC 800733 c.-76A>G upstream_gene_variant 1.0
rplC 800738 c.-71T>C upstream_gene_variant 1.0
rplC 800742 c.-67G>T upstream_gene_variant 1.0
rplC 800753 c.-56C>T upstream_gene_variant 1.0
rplC 800754 c.-55A>C upstream_gene_variant 1.0
rplC 800762 c.-47T>G upstream_gene_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472256 n.411T>C non_coding_transcript_exon_variant 1.0
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 1.0
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 1.0
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 1.0
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 1.0
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 1.0
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 1.0
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 1.0
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473097 n.1252G>A non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.95
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 1.0
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 1.0
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 1.0
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 1.0
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 1.0
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 1.0
rrl 1473883 n.226A>G non_coding_transcript_exon_variant 1.0
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
rrl 1473890 n.233T>C non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1473917 n.260G>C non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 1.0
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 1.0
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474265 n.608G>C non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474275 n.618T>A non_coding_transcript_exon_variant 1.0
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 1.0
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 1.0
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 1.0
rrl 1474675 n.1018C>A non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 1.0
rrl 1474800 n.1143T>C non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474920 n.1263G>A non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 1.0
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.67
rrl 1475536 n.1879C>A non_coding_transcript_exon_variant 0.67
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.67
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.67
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.67
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.67
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.67
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.67
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 1.0
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 1.0
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 1.0
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 1.0
rpsA 1833677 p.Val46Ile missense_variant 1.0
rpsA 1833685 c.144G>C synonymous_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 1.0
rpsA 1833704 p.Ile55Val missense_variant 1.0
rpsA 1833709 c.168C>G synonymous_variant 1.0
rpsA 1833721 c.180A>G synonymous_variant 1.0
rpsA 1833724 c.183C>T synonymous_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833745 c.204G>T synonymous_variant 1.0
rpsA 1833771 p.Asn77Thr missense_variant 1.0
rpsA 1834172 p.Ile211Val missense_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834183 c.642T>C synonymous_variant 1.0
rpsA 1834210 c.669C>T synonymous_variant 1.0
rpsA 1834219 c.678C>G synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834243 c.702G>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>G synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834279 p.Asp246Glu missense_variant 1.0
rpsA 1834283 p.Pro248Ala missense_variant 1.0
rpsA 1834298 p.Gln253Glu missense_variant 1.0
rpsA 1834303 c.762T>C synonymous_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834307 p.Asp256Gln missense_variant 1.0
rpsA 1834411 c.870T>C synonymous_variant 1.0
rpsA 1834420 c.879C>T synonymous_variant 1.0
rpsA 1834423 c.882G>T synonymous_variant 1.0
rpsA 1834427 p.Ile296Val missense_variant 1.0
rpsA 1834431 p.Val297Ala missense_variant 1.0
rpsA 1834447 c.906C>G synonymous_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834482 p.Glu314Ala missense_variant 1.0
rpsA 1834486 p.Glu315Asp missense_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
tlyA 1918290 p.Gln117His missense_variant 1.0
clpC1 4038842 c.1863G>C synonymous_variant 1.0
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 0.5
clpC1 4038849 p.Phe619Tyr missense_variant 0.5
clpC1 4038854 p.Lys617Asn missense_variant 0.5
clpC1 4038860 c.1845G>T synonymous_variant 1.0
clpC1 4038863 c.1842G>C synonymous_variant 0.5
clpC1 4038866 p.Lys613Arg missense_variant 0.5
clpC1 4038875 c.1830C>G synonymous_variant 0.5
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038881 c.1824C>T synonymous_variant 0.5
clpC1 4038885 p.Gly607Ala missense_variant 0.5
clpC1 4038890 c.1815G>A synonymous_variant 1.0
clpC1 4038894 p.Tyr604Phe missense_variant 0.5
clpC1 4038903 p.Tyr601Phe missense_variant 0.5
clpC1 4038905 c.1800A>G synonymous_variant 0.5
clpC1 4038911 c.1794G>T synonymous_variant 1.0
clpC1 4038914 c.1791G>C synonymous_variant 1.0
clpC1 4039018 p.Ser563Ala missense_variant 1.0
clpC1 4039019 c.1686G>C synonymous_variant 1.0
clpC1 4039022 c.1683A>G synonymous_variant 1.0
clpC1 4039031 c.1674T>A synonymous_variant 1.0
clpC1 4039040 p.Ser555Thr missense_variant 1.0
clpC1 4039043 c.1662G>C synonymous_variant 1.0
clpC1 4039067 c.1638G>C synonymous_variant 1.0
clpC1 4039070 c.1635G>C synonymous_variant 1.0
clpC1 4039073 c.1632C>T synonymous_variant 1.0
clpC1 4039079 c.1626C>G synonymous_variant 1.0
clpC1 4039691 c.1014G>C synonymous_variant 1.0
clpC1 4039711 p.Ile332Phe missense_variant 1.0
clpC1 4039714 p.Tyr331His missense_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 1.0
clpC1 4039739 c.966C>G synonymous_variant 1.0
clpC1 4039748 c.957G>C synonymous_variant 1.0
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039766 c.939T>C synonymous_variant 1.0
clpC1 4039773 p.Lys311Leu missense_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 1.0
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>G synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039838 p.Leu289Ile missense_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039853 p.Leu284Thr missense_variant 1.0
clpC1 4039865 c.840T>C synonymous_variant 1.0
clpC1 4039875 p.Asn277Arg missense_variant 1.0
clpC1 4039979 c.726C>G synonymous_variant 1.0
clpC1 4039994 p.Glu237Asp missense_variant 1.0
clpC1 4040001 p.His235Arg missense_variant 1.0
clpC1 4040009 c.696C>G synonymous_variant 1.0
clpC1 4040015 c.690G>C synonymous_variant 1.0
clpC1 4040018 c.687G>C synonymous_variant 1.0
clpC1 4040021 c.684A>C synonymous_variant 1.0
clpC1 4040024 c.681A>G synonymous_variant 0.92
clpC1 4040033 c.672G>C synonymous_variant 1.0
clpC1 4040069 c.636G>C synonymous_variant 1.0
clpC1 4040083 p.Thr208Ser missense_variant 0.93
clpC1 4040087 c.618G>C synonymous_variant 1.0
clpC1 4040090 c.615T>G synonymous_variant 1.0
clpC1 4040093 c.612C>G synonymous_variant 1.0
clpC1 4040096 p.Val203Ile missense_variant 1.0
clpC1 4040108 c.597G>C synonymous_variant 1.0
clpC1 4040117 c.588A>G synonymous_variant 1.0
clpC1 4040129 c.576C>A synonymous_variant 1.0
clpC1 4040135 c.570C>G synonymous_variant 1.0
clpC1 4040606 c.99T>C synonymous_variant 0.67
clpC1 4040615 c.90C>G synonymous_variant 0.75
clpC1 4040643 p.Arg21Lys missense_variant 1.0
clpC1 4040654 c.51G>A synonymous_variant 1.0
clpC1 4040657 c.48T>C synonymous_variant 1.0
clpC1 4040672 c.31_33delAGGinsCGC synonymous_variant 1.0
clpC1 4040675 c.30C>T synonymous_variant 1.0
clpC1 4040681 c.24T>C synonymous_variant 1.0
clpC1 4040690 c.15T>C synonymous_variant 1.0
clpC1 4040695 c.10C>A synonymous_variant 1.0
clpC1 4040696 c.9A>G synonymous_variant 1.0
panD 4044232 p.Cys17His missense_variant 0.67
panD 4044237 c.45G>C synonymous_variant 0.67
panD 4044240 c.42G>C synonymous_variant 0.67
panD 4044258 c.24G>C synonymous_variant 0.67
panD 4044264 p.Leu6Phe missense_variant 0.67