Rv1630 - c.669C>T
Drug resistance types
42 Sensitive
32 RR-TB
37 HR-TB
26 MDR-TB
10 Pre-XDR-TB
3 XDR-TB
166 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage5.2 | 2 |
| lineage4.1.2.1 | 14 |
| lineage4.8 | 21 |
| 24 | |
| lineage4.9 | 89 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage4.4.1.1 | 1 |
| lineage4.7 | 2 |
| lineage4.3.2.1 | 2 |
| La3;lineage4.9 | 8 |
| lineage2.1;lineage4.9 | 14 |
| lineage4.1.2 | 1 |
| lineage4.9;lineage6.3 | 7 |
| lineage4.1.1.1 | 3 |
| lineage4 | 3 |
| lineage3 | 8 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage2.2.1 | 17 |
| lineage1.1.2 | 1 |
| La3;lineage1.1.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2 | 1 |
| lineage4.3.3 | 5 |
| La3;lineage2.2.1 | 2 |
| lineage2.2.2 | 2 |
| lineage4.1.3 | 2 |
| La3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage4.8 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| La1.2 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.6.1.2 | 4 |
| M.canetti;lineage2.2 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage2.1 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.2.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage3;lineage4 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1 | 1 |
| lineage4.3.4.2 | 1 |
| La1.8.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.6.5 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.5 | 1 |
| lineage4.8;lineage4.9 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.3.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.8.1 | 1 |
| lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.4 | 1 |
| lineage2;lineage4 | 1 |
| La1.2.BCG | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 316 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR234659 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1173363 | Other | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675275 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4817204 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4816585 | Other | lineage2.2 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | SRR26159043 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR1172728 | RR-TB | La3 | None | ERR9117709 | Other | None | SRR3675549 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR29050928 | Other | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR23961549 | Other | La1.2 | None | SRR1184294 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR3675221 | Other | lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4407463 | HR-TB | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3416776 | Other | lineage2.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR978752 | Other | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1173218 | Other | lineage4.3.3 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR1173384 | Other | lineage4.9 | None | ERR4818126 | Other | lineage1.2.2 | None | ERR4816999 | Other | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | SRR6789626 | Other | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR29093909 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR11049020 | Other | lineage4.8 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR28044634 | Other | lineage3 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR25827682 | Other | None | ERR212001 | HR-TB | None | SRR1172857 | Other | None | ERR9786671 | Other | None | SRR1173281 | Other | lineage3 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR9786604 | Other | None | SRR11462861 | Other | La1.8.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4818615 | Sensitive | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR978765 | RR-TB | lineage4.8 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR7496517 | Other | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1049672 | Other | lineage3 | None | SRR1169249 | Other | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR29051077 | Other | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR29051093 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR11081258 | Other | lineage4.8 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR1023509 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4407452 | Other | lineage3 | None | ERR978735 | Other | lineage4.8 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR28119752 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR502912 | Other | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None |
|---|
