TB-Profiler result

Run: ERR171142
Summary

Run ID: ERR171142

Sample name:

Date: 31-03-2023 14:56:25

Number of reads: 1190195

Percentage reads mapped: 28.91

Strain: lineage4.9;lineage3.1.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 0.21
lineage4 Euro-American LAM;T;S;X;H None 0.78
lineage4.9 Euro-American (H37Rv-like) T1 None 0.66
lineage3.1 East-African-Indian Non-CAS1-Delhi RD750 0.14
lineage3.1.1 East-African-Indian CAS1-Kili RD750 0.16
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.67 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.8 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.77 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5056 c.-184A>C upstream_gene_variant 0.1
gyrB 6144 p.His302Arg missense_variant 0.12
gyrA 7362 p.Glu21Gln missense_variant 0.33
gyrA 7585 p.Ser95Thr missense_variant 0.27
gyrA 9304 p.Gly668Asp missense_variant 0.39
fgd1 491742 c.960T>C synonymous_variant 0.29
rpoB 759746 c.-61C>T upstream_gene_variant 0.37
rpoB 761102 c.1296A>G synonymous_variant 0.15
rpoB 762254 c.2448T>C synonymous_variant 0.11
rpoB 762284 c.2478G>T synonymous_variant 0.12
rpoB 762293 c.2487T>C synonymous_variant 0.12
rpoB 762296 c.2490G>C synonymous_variant 0.12
rpoB 762849 p.Tyr1015Asp missense_variant 0.14
rpoB 762855 p.Val1017Ile missense_variant 0.16
rpoB 762858 p.Thr1018Ser missense_variant 0.15
rpoC 762866 c.-504C>T upstream_gene_variant 0.2
rpoB 762870 p.Met1022Gln missense_variant 0.19
rpoB 762879 p.Met1025Leu missense_variant 0.34
rpoC 762902 c.-468C>T upstream_gene_variant 0.4
rpoC 762911 c.-459C>T upstream_gene_variant 0.41
rpoC 762917 c.-453C>T upstream_gene_variant 0.39
rpoC 762920 c.-450C>T upstream_gene_variant 0.41
rpoC 762929 c.-441G>T upstream_gene_variant 0.45
rpoC 762944 c.-426C>T upstream_gene_variant 0.36
rpoC 762956 c.-414G>T upstream_gene_variant 0.33
rpoC 762962 c.-408C>T upstream_gene_variant 0.37
rpoC 762971 c.-399G>C upstream_gene_variant 0.14
rpoC 762983 c.-387C>T upstream_gene_variant 0.28
rpoC 762989 c.-381G>C upstream_gene_variant 0.27
rpoC 762995 c.-375G>T upstream_gene_variant 0.16
rpoC 763031 c.-339T>C upstream_gene_variant 0.28
rpoC 763115 c.-255T>C upstream_gene_variant 0.12
rpoC 764509 c.1140G>C synonymous_variant 0.11
rpoC 764512 c.1143G>C synonymous_variant 0.11
rpoC 764536 c.1167G>C synonymous_variant 0.12
rpoC 764543 p.Thr392Ala missense_variant 0.13
rpoC 764653 c.1284G>C synonymous_variant 0.11
rpoC 764692 c.1323C>T synonymous_variant 0.16
rpoC 764706 p.Leu446Gln missense_variant 0.38
rpoC 764731 c.1362G>C synonymous_variant 0.43
rpoC 764737 c.1368G>C synonymous_variant 0.43
rpoC 764746 c.1377G>T synonymous_variant 0.42
rpoC 764755 p.Asp462Glu missense_variant 0.48
rpoC 764758 c.1389C>G synonymous_variant 0.47
rpoC 764760 p.Asn464Ser missense_variant 0.46
rpoC 764764 c.1395T>C synonymous_variant 0.46
rpoC 764767 c.1398G>T synonymous_variant 0.45
rpoC 764776 c.1407C>T synonymous_variant 0.43
rpoC 764785 c.1416C>T synonymous_variant 0.45
rpoC 764791 c.1422C>T synonymous_variant 0.39
rpoC 764797 c.1428G>T synonymous_variant 0.21
mmpL5 775639 p.Ile948Val missense_variant 0.37
mmpL5 776100 p.Thr794Ile missense_variant 0.25
rpsL 781395 c.-165T>C upstream_gene_variant 0.47
rpsL 781754 c.195G>A synonymous_variant 0.18
rpsL 781760 c.201T>C synonymous_variant 0.24
rpsL 781766 c.207C>T synonymous_variant 0.24
rpsL 781772 c.213C>T synonymous_variant 0.25
rpsL 781796 p.Met79Ile missense_variant 0.23
rpsL 781802 c.243G>C synonymous_variant 0.3
rpsL 781805 c.246G>T synonymous_variant 0.28
rpsL 781811 c.252C>T synonymous_variant 0.33
rpsL 781814 c.255C>T synonymous_variant 0.32
rpsL 781817 c.258G>T synonymous_variant 0.32
rpsL 781829 c.270G>C synonymous_variant 0.32
rpsL 781832 c.273T>C synonymous_variant 0.35
rpsL 781838 c.279G>T synonymous_variant 0.34
rpsL 781851 p.Ile98Val missense_variant 0.16
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.12
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.14
rrs 1472080 n.235G>A non_coding_transcript_exon_variant 0.14
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.64
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.63
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.17
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.67
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.64
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.13
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.9
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.13
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.81
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.8
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.53
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.61
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.61
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.61
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.12
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.57
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.58
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.12
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.17
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.73
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.74
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.76
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.75
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.75
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.13
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.93
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.69
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.15
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.14
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.67
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.75
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.68
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.31
rrs 1472674 n.829T>G non_coding_transcript_exon_variant 0.19
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.21
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.21
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.36
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.67
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.19
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.12
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.58
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.2
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.67
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.21
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.21
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.47
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.22
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.32
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.17
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.63
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.75
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.74
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.89
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.84
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.89
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.74
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.75
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.92
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.85
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.87
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.93
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.86
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.92
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.92
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.83
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.81
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.81
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.87
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.87
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.81
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.88
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.87
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.86
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.13
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.14
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.14
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.91
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.91
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.84
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.88
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.43
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.86
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.83
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.85
rrl 1473392 n.-266C>A upstream_gene_variant 0.17
rrl 1473697 n.40C>T non_coding_transcript_exon_variant 0.46
rrl 1473698 n.41G>A non_coding_transcript_exon_variant 0.47
rrl 1473718 n.61G>T non_coding_transcript_exon_variant 0.5
rrl 1473721 n.64G>A non_coding_transcript_exon_variant 0.51
rrl 1473722 n.65G>T non_coding_transcript_exon_variant 0.51
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.51
rrl 1473744 n.87T>C non_coding_transcript_exon_variant 0.49
rrl 1473746 n.89T>A non_coding_transcript_exon_variant 0.47
rrl 1473747 n.90C>T non_coding_transcript_exon_variant 0.47
rrl 1473751 n.94C>T non_coding_transcript_exon_variant 0.47
rrl 1473753 n.96A>G non_coding_transcript_exon_variant 0.46
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.46
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.45
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.45
rrl 1473852 n.195T>C non_coding_transcript_exon_variant 0.12
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.13
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.26
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.26
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.66
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.69
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.78
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.76
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.8
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.82
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.73
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.81
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.77
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.79
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.73
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.4
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.14
rrl 1474272 n.615C>T non_coding_transcript_exon_variant 0.14
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.43
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.22
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.19
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.18
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.14
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.21
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.65
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.65
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.59
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.6
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.65
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.65
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.64
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.24
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.6
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.72
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.75
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.76
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.8
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.8
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.85
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.87
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.87
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.85
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.85
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.85
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.84
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.83
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.75
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.75
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.83
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.84
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.85
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.76
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.61
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.77
rrl 1474694 n.1037C>T non_coding_transcript_exon_variant 0.57
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.19
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.28
rrl 1474734 n.1077G>A non_coding_transcript_exon_variant 0.57
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.35
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.56
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.27
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.73
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.54
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.69
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.69
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.57
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.85
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.85
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.71
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.82
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.83
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.14
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.88
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.75
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.81
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.69
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.12
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.17
rrl 1475488 n.1831G>C non_coding_transcript_exon_variant 0.21
rrl 1475499 n.1842C>T non_coding_transcript_exon_variant 0.62
rrl 1475515 n.1858G>A non_coding_transcript_exon_variant 0.58
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.75
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.62
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.67
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.7
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.66
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.59
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.59
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.4
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.48
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.32
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.5
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.51
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.53
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.17
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.17
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.55
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.19
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.14
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.44
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.3
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.25
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.25
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.13
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.35
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.54
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.13
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.83
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.85
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.95
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.95
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.95
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.97
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.94
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.95
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.95
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.83
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.9
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.88
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.87
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.8
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.85
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.75
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.83
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.82
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.81
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.32
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.3
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.3
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.32
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.32
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.29
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.27
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.13
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.4
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.62
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.73
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.8
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.85
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.93
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.93
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.92
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.87
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.87
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.92
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.82
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.78
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.74
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.79
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.8
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.66
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.29
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.23
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.26
rrl 1476297 n.2640C>A non_coding_transcript_exon_variant 0.14
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.14
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.14
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.23
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.21
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.35
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.41
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.16
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.56
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.16
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.11
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.24
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.76
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.24
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.16
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.76
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.23
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.18
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.17
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.83
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.9
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.8
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.85
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.9
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.83
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.82
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.81
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.75
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.78
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.77
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.76
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.75
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.26
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.45
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.45
rrl 1476586 n.2929C>T non_coding_transcript_exon_variant 0.24
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.45
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.46
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.45
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.45
rrl 1476613 n.2956G>A non_coding_transcript_exon_variant 0.23
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.43
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.38
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.45
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.38
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.46
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.39
fabG1 1673363 c.-77G>T upstream_gene_variant 0.12
rpsA 1833991 c.450C>A synonymous_variant 0.19
rpsA 1833994 c.453G>C synonymous_variant 0.19
rpsA 1833997 c.456G>C synonymous_variant 0.17
rpsA 1834000 c.459G>T synonymous_variant 0.19
rpsA 1834012 c.471G>C synonymous_variant 0.19
rpsA 1834015 c.474G>C synonymous_variant 0.18
rpsA 1834040 p.Lys167Gln missense_variant 0.15
rpsA 1834043 p.Glu168Gln missense_variant 0.15
rpsA 1834051 c.510G>A synonymous_variant 0.15
rpsA 1834054 c.513C>T synonymous_variant 0.16
rpsA 1834195 c.654G>C synonymous_variant 0.16
rpsA 1834210 c.669C>T synonymous_variant 0.22
rpsA 1834213 c.672G>A synonymous_variant 0.21
rpsA 1834219 c.678C>G synonymous_variant 0.21
rpsA 1834222 c.681T>C synonymous_variant 0.22
rpsA 1834225 c.684C>G synonymous_variant 0.21
rpsA 1834228 c.687C>T synonymous_variant 0.24
rpsA 1834231 c.690T>C synonymous_variant 0.22
rpsA 1834246 c.705G>T synonymous_variant 0.24
rpsA 1834249 c.708T>C synonymous_variant 0.32
rpsA 1834252 c.711C>T synonymous_variant 0.2
rpsA 1834261 c.720A>G synonymous_variant 0.29
rpsA 1834264 c.723G>C synonymous_variant 0.29
rpsA 1834486 p.Glu315Asp missense_variant 0.14
rpsA 1834501 c.960G>C synonymous_variant 0.13
rpsA 1834504 c.963G>C synonymous_variant 0.14
rpsA 1834523 p.Glu328Gln missense_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 0.29
katG 2154724 p.Arg463Leu missense_variant 0.21
PPE35 2167926 p.Leu896Ser missense_variant 0.22
PPE35 2170461 p.Gly51Glu missense_variant 0.18
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.43
pncA 2289047 c.195C>T synonymous_variant 0.22
pncA 2289365 c.-125delC upstream_gene_variant 0.38
ahpC 2726105 c.-88G>A upstream_gene_variant 0.18
Rv2752c 3065129 c.1063C>T synonymous_variant 0.14
Rv2752c 3066026 c.165delC frameshift_variant 0.23
thyA 3073806 c.666C>G synonymous_variant 0.38
ald 3086788 c.-32T>C upstream_gene_variant 0.43
fprA 3473996 c.-11_-10insA upstream_gene_variant 0.29
clpC1 4038839 c.1866G>C synonymous_variant 0.24
clpC1 4038845 c.1860G>C synonymous_variant 0.24
clpC1 4038851 c.1854G>C synonymous_variant 0.24
clpC1 4038857 c.1848C>A synonymous_variant 0.24
clpC1 4038860 c.1845G>C synonymous_variant 0.42
clpC1 4038863 c.1842G>C synonymous_variant 0.33
clpC1 4038875 c.1830C>G synonymous_variant 0.28
clpC1 4038878 c.1827A>G synonymous_variant 0.28
clpC1 4038890 p.Glu605Asp missense_variant 0.22
clpC1 4038899 c.1806C>T synonymous_variant 0.21
clpC1 4038905 c.1800A>C synonymous_variant 0.2
clpC1 4039889 c.816G>T synonymous_variant 0.18
clpC1 4039898 c.807C>G synonymous_variant 0.17
clpC1 4039904 c.801A>G synonymous_variant 0.17
clpC1 4039907 c.798G>A synonymous_variant 0.17
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.14
clpC1 4039934 c.771G>A synonymous_variant 0.14
clpC1 4039937 c.768G>C synonymous_variant 0.14
clpC1 4039943 c.762G>C synonymous_variant 0.12
clpC1 4039946 c.759A>C synonymous_variant 0.12
clpC1 4039949 c.756G>C synonymous_variant 0.12
clpC1 4039952 c.753T>C synonymous_variant 0.12
clpC1 4039958 c.747G>C synonymous_variant 0.12
clpC1 4039964 c.741C>G synonymous_variant 0.14
clpC1 4039967 p.Gln246His missense_variant 0.14
clpC1 4039982 c.723G>C synonymous_variant 0.25
clpC1 4039991 c.714G>C synonymous_variant 0.16
clpC1 4039994 p.Glu237Asp missense_variant 0.15
clpC1 4039997 c.708C>T synonymous_variant 0.15
clpC1 4040009 c.696C>T synonymous_variant 0.2
clpC1 4040015 c.690G>A synonymous_variant 0.19
clpC1 4040021 c.684A>C synonymous_variant 0.19
clpC1 4040024 c.681A>G synonymous_variant 0.17
clpC1 4040027 c.678C>G synonymous_variant 0.16
clpC1 4040033 c.672G>C synonymous_variant 0.15
clpC1 4040042 c.663C>T synonymous_variant 0.14
clpC1 4040057 c.648C>T synonymous_variant 0.19
clpC1 4040060 c.645C>T synonymous_variant 0.17
clpC1 4040069 c.636G>C synonymous_variant 0.14
embC 4241562 p.Arg567His missense_variant 0.24
embC 4242075 p.Arg738Gln missense_variant 0.16
embA 4242643 c.-590C>T upstream_gene_variant 0.18
whiB6 4338595 c.-75delG upstream_gene_variant 0.54
gid 4407588 c.615A>G synonymous_variant 0.28