EBG00000313339 - n.74T>A
Drug resistance types
124 Sensitive
17 RR-TB
53 HR-TB
16 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
107 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 21 |
| lineage1.1.1 | 1 |
| lineage4.3.3 | 3 |
| lineage4.9 | 112 |
| lineage4.1 | 1 |
| 41 | |
| lineage4;lineage2.2 | 1 |
| lineage4 | 65 |
| lineage2.2 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage3 | 6 |
| lineage4.1.2.1 | 11 |
| lineage1.1.2 | 3 |
| lineage4.1.2 | 2 |
| lineage4.2.1 | 4 |
| lineage4.3.2.1 | 2 |
| lineage5.1.4 | 1 |
| lineage4.8 | 7 |
| lineage3.1.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.4.2.1 | 3 |
| lineage4.4 | 1 |
| lineage3.1.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.8.1 | 1 |
| La1.8.1 | 4 |
| La1.7.1 | 1 |
| La1.3 | 8 |
| lineage4.9;La1.3 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.5 | 1 |
| lineage4.6 | 1 |
| lineage2.2.1.1 | 1 |
| lineage6 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| La1.6 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.2.2.1 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 329 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR22528533 | MDR-TB | lineage4.3.3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692791 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692844 | Other | lineage4.9 | None | SRR8692832 | Other | lineage4.9 | None | SRR8692887 | Other | None | ERR158583 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675387 | Sensitive | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR4815022 | Other | lineage3.1.2.1 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675456 | HR-TB | None | SRR3675502 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | SRR3675555 | HR-TB | None | SRR3675550 | Other | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | ERR1035162 | Other | None | ERR4818431 | Other | lineage1.1.2 | gb | ERR4818873 | Other | lineage4.1.2 | gb | ERR2512770 | Other | lineage4.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341396 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR5341418 | Other | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR1023509 | Other | None | ERR2446382 | Other | lineage4 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR4819933 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | SRR6045503 | HR-TB | None | ERR2517475 | Other | lineage4 | None | SRR6045613 | Other | lineage3.1.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4821718 | Other | lineage4.2.2.2 | gb | SRR6045706 | Sensitive | lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045894 | Other | lineage4.8 | None | SRR6044787 | Other | lineage4.4 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6046497 | Other | lineage4.9 | None | ERR4829238 | Sensitive | lineage3 | None | ERR4829336 | Other | lineage4 | None | SRR6046442 | Other | lineage3 | None | SRR6046482 | HR-TB | None | SRR6044993 | Other | lineage3 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046579 | MDR-TB | lineage1.2.1.2.1 | gb | ERR323037 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046739 | Other | lineage1.1.2 | None | SRR6046802 | Other | lineage4 | None | SRR6046824 | HR-TB | None | ERR4832052 | HR-TB | lineage2.1 | vn | ERR502470 | RR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR4831638 | Sensitive | None | ERR4831787 | HR-TB | lineage4.4.2 | vn | SRR6855695 | Sensitive | lineage4.8 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR502943 | HR-TB | None | ERR502889 | Other | None | SRR7131123 | Other | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR10796597 | Other | lineage4 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR067681 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283028 | Other | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283032 | HR-TB | None | ERR373945 | HR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3439432 | Other | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR3587597 | Other | La1.7.1 | None | ERR363437 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR400345 | Other | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797068 | Other | La1.8.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797064 | Sensitive | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769551 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6197036 | Other | lineage4 | None | ERR4812155 | Sensitive | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR736848 | HR-TB | None | ERR9117704 | Other | lineage4.6 | None | ERR736837 | Other | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR9787336 | Other | lineage6 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140736 | RR-TB | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR13888750 | Other | La2 | None | SRR16157123 | Other | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None |
|---|
