Run ID: SRR1173687
Sample name:
Date: 03-04-2023 03:30:07
Number of reads: 879994
Percentage reads mapped: 36.95
Strain: lineage2.2.1
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7581 | p.Asp94Tyr | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761116 | p.Asn437Thr | missense_variant | 0.28 | rifampicin |
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.27 | rifampicin |
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.56 | rifampicin |
rpoB | 761196 | p.Leu464Met | missense_variant | 0.21 | rifampicin |
rpoC | 764822 | p.Asp485Asn | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
rrs | 1473246 | n.1401A>G | non_coding_transcript_exon_variant | 0.25 | kanamycin, capreomycin, aminoglycosides, amikacin |
katG | 2155109 | p.Ile335Val | missense_variant | 1.0 | isoniazid |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289016 | p.Thr76Pro | missense_variant | 1.0 | pyrazinamide |
embB | 4248003 | p.Gln497Arg | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7355 | c.54T>C | synonymous_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7394 | c.93T>C | synonymous_variant | 0.38 |
gyrA | 7406 | c.105G>C | synonymous_variant | 0.33 |
gyrA | 7418 | c.117C>G | synonymous_variant | 0.21 |
gyrA | 7421 | c.120G>C | synonymous_variant | 0.15 |
gyrA | 7427 | c.126G>C | synonymous_variant | 0.15 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490847 | p.Glu22Ala | missense_variant | 0.22 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576148 | c.801G>T | synonymous_variant | 0.15 |
rpoB | 760415 | c.609C>T | synonymous_variant | 0.12 |
rpoB | 760424 | c.618C>T | synonymous_variant | 0.12 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.11 |
rpoB | 760451 | c.645C>G | synonymous_variant | 0.19 |
rpoB | 760460 | c.654G>C | synonymous_variant | 0.17 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.17 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.19 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.19 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.13 |
rpoB | 760965 | p.Met387Leu | missense_variant | 0.13 |
rpoB | 760970 | c.1164G>C | synonymous_variant | 0.13 |
rpoB | 760973 | c.1167G>C | synonymous_variant | 0.13 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.28 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.3 |
rpoB | 761003 | c.1197C>G | synonymous_variant | 0.33 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.29 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.33 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.28 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.28 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.27 |
rpoB | 761064 | p.Ala420Ser | missense_variant | 0.25 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.2 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.22 |
rpoB | 761126 | c.1320G>C | synonymous_variant | 0.27 |
rpoB | 761132 | c.1326G>C | synonymous_variant | 0.29 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.29 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.39 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.47 |
rpoB | 761168 | c.1362C>G | synonymous_variant | 0.47 |
rpoB | 761180 | c.1374A>G | synonymous_variant | 0.33 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.28 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.22 |
rpoB | 761221 | p.Ser472Cys | missense_variant | 0.12 |
rpoB | 761627 | c.1821C>T | synonymous_variant | 0.12 |
rpoB | 761633 | c.1827G>C | synonymous_variant | 0.12 |
rpoB | 761636 | c.1830G>C | synonymous_variant | 0.12 |
rpoB | 761643 | p.Val613Leu | missense_variant | 0.11 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.11 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.18 |
rpoB | 761666 | c.1860G>C | synonymous_variant | 0.17 |
rpoB | 761675 | c.1869G>C | synonymous_variant | 0.19 |
rpoB | 761694 | p.Ile630Val | missense_variant | 0.11 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.11 |
rpoB | 762889 | p.His1028Leu | missense_variant | 0.13 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.18 |
rpoC | 762920 | c.-450C>G | upstream_gene_variant | 0.32 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.35 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.3 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.33 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.45 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.56 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.4 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.4 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.29 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 1.0 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.28 |
rpoC | 763053 | c.-317_-315delTTGinsCTC | upstream_gene_variant | 0.12 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.11 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.45 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.42 |
rpoC | 763142 | c.-228C>G | upstream_gene_variant | 0.3 |
rpoC | 763158 | c.-212C>T | upstream_gene_variant | 0.32 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.14 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.15 |
rpoC | 763172 | c.-198G>C | upstream_gene_variant | 0.13 |
rpoC | 763504 | c.135C>T | synonymous_variant | 0.18 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.18 |
rpoC | 763528 | c.159G>T | synonymous_variant | 0.2 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.2 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.19 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.19 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.16 |
rpoC | 763570 | c.201G>T | synonymous_variant | 0.2 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.21 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.25 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.15 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.15 |
rpoC | 763686 | p.Tyr106Phe | missense_variant | 0.22 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.13 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.13 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.14 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.12 |
rpoC | 763765 | c.396T>G | synonymous_variant | 0.13 |
rpoC | 763940 | p.Ala191Ser | missense_variant | 0.11 |
rpoC | 764263 | c.894G>C | synonymous_variant | 0.17 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.14 |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.12 |
rpoC | 764282 | p.Ser305Thr | missense_variant | 0.12 |
rpoC | 764285 | p.Gly306Arg | missense_variant | 0.12 |
rpoC | 764491 | c.1122G>C | synonymous_variant | 0.18 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.2 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.17 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.21 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.19 |
rpoC | 764563 | c.1194G>C | synonymous_variant | 0.12 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.12 |
rpoC | 764572 | c.1203G>C | synonymous_variant | 0.13 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.13 |
rpoC | 764577 | p.Ser403Cys | missense_variant | 0.12 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.12 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.15 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.21 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.42 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.42 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.31 |
rpoC | 764722 | c.1353G>C | synonymous_variant | 0.24 |
rpoC | 764731 | c.1362G>C | synonymous_variant | 0.22 |
rpoC | 764737 | c.1368G>C | synonymous_variant | 0.14 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.16 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.12 |
rpoC | 765923 | p.Asn852Ser | missense_variant | 0.17 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.17 |
rpoC | 765937 | c.2568T>C | synonymous_variant | 0.18 |
rpoC | 765940 | c.2571A>C | synonymous_variant | 0.2 |
rpoC | 765947 | c.2578_2580delTTGinsCTC | synonymous_variant | 0.22 |
rpoC | 765962 | c.2593T>C | synonymous_variant | 0.18 |
rpoC | 765967 | c.2598C>G | synonymous_variant | 0.17 |
rpoC | 766763 | p.Ile1132Leu | missense_variant | 0.19 |
rpoC | 766774 | c.3405T>C | synonymous_variant | 0.26 |
rpoC | 766798 | c.3429C>G | synonymous_variant | 0.38 |
rpoC | 766799 | p.Ala1144Ser | missense_variant | 0.38 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.42 |
rpoC | 766841 | p.Val1158Ile | missense_variant | 0.39 |
rpoC | 766856 | c.3487_3489delCGCinsAGG | synonymous_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.22 |
rpsL | 781768 | p.Glu70Val | missense_variant | 0.23 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.18 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.19 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.2 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.13 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.18 |
fbiC | 1302917 | c.-14_-13insA | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472107 | n.262A>G | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472481 | n.636G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472495 | n.650C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472582 | n.737G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472583 | n.738T>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472674 | n.829T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472685 | n.840G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472791 | n.946G>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472793 | n.948A>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472973 | n.1128A>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473062 | n.1217T>G | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473065 | n.1220C>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.74 |
rrs | 1473266 | n.1421A>G | non_coding_transcript_exon_variant | 0.68 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473310 | n.1465T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1473691 | n.34T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473717 | n.60G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473731 | n.74T>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1473782 | n.125A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473788 | n.131A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473793 | n.136G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473844 | n.187C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473870 | n.213G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473871 | n.214T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473887 | n.230T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473888 | n.231T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474166 | n.509G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 0.59 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474280 | n.623C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474317 | n.660G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474351 | n.694G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474376 | n.719T>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474402 | n.745T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474406 | n.749T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474465 | n.808G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474584 | n.927C>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474627 | n.970G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474651 | n.995delT | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474740 | n.1083G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474747 | n.1090C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1475066 | n.1409C>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1475067 | n.1410A>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1475076 | n.1419C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475079 | n.1422T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475080 | n.1423G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475088 | n.1431A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475116 | n.1459G>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475508 | n.1851A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475538 | n.1881T>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475544 | n.1887A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475550 | n.1893A>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475649 | n.1992A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475740 | n.2083G>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.68 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.59 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1475982 | n.2325G>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476126 | n.2469C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476128 | n.2471T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476594 | n.2937C>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476603 | n.2946G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476608 | n.2951C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476628 | n.2971T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.32 |
inhA | 1674658 | p.Arg153Trp | missense_variant | 0.12 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.23 |
rpsA | 1833665 | p.Thr42Val | missense_variant | 0.21 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.15 |
rpsA | 1833679 | c.138G>C | synonymous_variant | 0.15 |
rpsA | 1833697 | c.156C>G | synonymous_variant | 0.25 |
rpsA | 1833700 | c.159C>G | synonymous_variant | 0.2 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.17 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.17 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.2 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.2 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.22 |
rpsA | 1833769 | c.228C>G | synonymous_variant | 0.12 |
rpsA | 1834090 | c.549G>C | synonymous_variant | 0.13 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834219 | c.678C>G | synonymous_variant | 0.12 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.12 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.14 |
rpsA | 1834228 | c.687C>T | synonymous_variant | 0.15 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.15 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.17 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.18 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.2 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.24 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.24 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 0.17 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.17 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 0.15 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.17 |
rpsA | 1834307 | p.Asp256Thr | missense_variant | 0.15 |
rpsA | 1834340 | p.Met267Leu | missense_variant | 0.12 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.17 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.2 |
rpsA | 1834483 | p.Glu314Asp | missense_variant | 0.2 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.22 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.12 |
rpsA | 1834776 | p.Ala412Val | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2154873 | p.Tyr413* | stop_gained | 0.15 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170784 | c.-172A>G | upstream_gene_variant | 0.22 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726506 | p.Thr105Lys | missense_variant | 0.29 |
thyX | 3067325 | c.621A>G | synonymous_variant | 0.14 |
thyX | 3067355 | c.591A>C | synonymous_variant | 0.22 |
thyX | 3067358 | p.Ile196Val | missense_variant | 0.22 |
thyX | 3067385 | c.561C>G | synonymous_variant | 0.42 |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.36 |
thyX | 3067400 | c.546C>G | synonymous_variant | 0.38 |
thyX | 3067403 | c.543C>G | synonymous_variant | 0.38 |
thyX | 3067406 | c.540A>G | synonymous_variant | 0.43 |
thyX | 3067433 | c.513C>G | synonymous_variant | 0.22 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
Rv3236c | 3613108 | c.9T>G | synonymous_variant | 0.2 |
fbiA | 3640353 | c.-190G>T | upstream_gene_variant | 0.2 |
fbiB | 3640879 | c.-656C>T | upstream_gene_variant | 1.0 |
clpC1 | 4039481 | c.1224T>C | synonymous_variant | 0.16 |
clpC1 | 4039484 | c.1221T>C | synonymous_variant | 0.15 |
clpC1 | 4039487 | c.1218G>C | synonymous_variant | 0.19 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 0.18 |
clpC1 | 4039533 | p.Asn391Ser | missense_variant | 0.17 |
clpC1 | 4039541 | c.1164C>G | synonymous_variant | 0.16 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.11 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.24 |
clpC1 | 4039875 | p.Asn277Arg | missense_variant | 0.29 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.31 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.38 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.23 |
clpC1 | 4040000 | p.His235Lys | missense_variant | 0.23 |
clpC1 | 4040003 | c.702G>C | synonymous_variant | 0.25 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.42 |
clpC1 | 4040021 | c.684A>T | synonymous_variant | 0.41 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.39 |
clpC1 | 4040031 | p.Val225Ala | missense_variant | 0.28 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.35 |
clpC1 | 4040048 | c.657C>T | synonymous_variant | 0.27 |
clpC1 | 4040087 | c.618G>T | synonymous_variant | 0.21 |
clpC1 | 4040090 | c.615T>C | synonymous_variant | 0.21 |
clpC1 | 4040644 | c.61A>C | synonymous_variant | 0.13 |
embC | 4240766 | p.Arg302Trp | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243598 | c.366G>A | synonymous_variant | 1.0 |
embB | 4247872 | c.1359C>T | synonymous_variant | 1.0 |
aftB | 4266964 | p.Pro625Thr | missense_variant | 0.14 |
aftB | 4267464 | p.Asn458Ile | missense_variant | 0.17 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4326474 | p.Pro334Ala | missense_variant | 1.0 |
whiB6 | 4338326 | p.Ala66Thr | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
mshA | 575010 | c.-337_600del | start_lost&conservative_inframe_deletion | 1.0 |