EBG00000313339 - n.1459G>A
Drug resistance types
66 Sensitive
33 RR-TB
34 HR-TB
50 MDR-TB
19 Pre-XDR-TB
1 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 38 |
| lineage4 | 18 |
| lineage3 | 15 |
| lineage4.4.2 | 3 |
| lineage4.9 | 89 |
| lineage4.1.2.1 | 7 |
| lineage2.2 | 3 |
| 7 | |
| lineage4.1.1.3 | 3 |
| lineage4.4.1.1.1 | 3 |
| lineage4.9.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 5 |
| lineage4.1.3 | 1 |
| lineage4.8 | 12 |
| lineage4;lineage2 | 1 |
| lineage2.2.2 | 2 |
| lineage4.6.1.2 | 5 |
| lineage4.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1 | 7 |
| lineage1.1.1 | 1 |
| lineage4.6.3 | 1 |
| lineage3.1 | 1 |
| lineage4.3.1 | 1 |
| lineage4.2.1.1 | 2 |
| lineage6.3.1 | 1 |
| lineage5.1.1 | 2 |
| La1.8.1 | 4 |
| lineage4.7 | 3 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.2.1 | 2 |
| lineage4.8.1 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.9;La1.3 | 3 |
| La1.3 | 6 |
| lineage1.1.3.3 | 1 |
| lineage1.1.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.8;lineage4.3.3 | 3 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| La2 | 1 |
| lineage4.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 272 |
Geographic prevalence
Country level data for this variant is available for 17 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18003028 | Sensitive | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR2100537 | Sensitive | lineage3 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR2100532 | Sensitive | lineage3 | None | SRR21240161 | Sensitive | lineage4.1.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4815310 | Other | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR1750881 | Sensitive | lineage4.1.1.3 | zw | ERR4812763 | Other | lineage2.2.1 | None | ERR1750880 | MDR-TB | lineage4.4.1.1.1 | zw | ERR1750893 | Sensitive | lineage4.9.1 | zw | ERR1750889 | Other | lineage4.4.1.1 | None | ERR1750885 | Sensitive | lineage2.2.1 | zw | ERR1750919 | Sensitive | lineage4.4.1.1 | za | ERR1750895 | Sensitive | lineage2.2.1 | zw | ERR4814976 | Other | lineage4.9 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4815550 | Other | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816943 | Sensitive | lineage4.3.3 | gb | ERR2229197 | Sensitive | lineage4 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR4033448 | HR-TB | lineage4.3 | None | ERR4815815 | Sensitive | lineage4 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR228175 | Sensitive | lineage3 | None | ERR228180 | Sensitive | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819041 | Sensitive | lineage4.3.3 | gb | ERR4818904 | Other | lineage4.8 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4817628 | Sensitive | lineage4.8 | gb | ERR4819357 | Other | lineage4.9 | None | ERR4820290 | Other | lineage3 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1723460 | MDR-TB | lineage2.2.1 | cn | ERR2514485 | Sensitive | lineage4.6.3 | gb | ERR4819462 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2229355 | Sensitive | lineage4.8 | None | SRR6046141 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821568 | Other | lineage4.3.4.2.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045778 | Other | lineage3.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR4829500 | Sensitive | lineage4.1.2.1 | it | SRR6046376 | Other | lineage3 | None | ERR4829013 | Sensitive | lineage4.8 | it | ERR4830668 | MDR-TB | lineage4.1.2.1 | dz | ERR4830672 | MDR-TB | lineage4.3.1 | dz | SRR6046540 | HR-TB | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6785261 | HR-TB | lineage4.2.1.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR502523 | Other | lineage6.3.1 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6896446 | Sensitive | lineage3 | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR5087846 | Other | La1.8.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR036207 | Other | lineage4.9 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR1063855 | Other | lineage4 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439276 | Other | La1.8.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4407500 | Sensitive | lineage4.8 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4769514 | Other | La1.3 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796257 | Pre-XDR-TB | lineage2.2.1 | in | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4800222 | Sensitive | lineage1.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5864958 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8773831 | Sensitive | lineage4.8 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972447 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None |
|---|
