Run ID: ERR036207
Sample name:
Date: 31-03-2023 08:29:39
Number of reads: 113193
Percentage reads mapped: 3.94
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.93 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7385 | c.84C>T | synonymous_variant | 0.5 |
gyrA | 7386 | p.Ile29Leu | missense_variant | 0.5 |
gyrA | 7394 | c.93T>C | synonymous_variant | 0.5 |
gyrA | 7401 | p.Ser34Ala | missense_variant | 0.5 |
gyrA | 7406 | c.105G>C | synonymous_variant | 0.5 |
gyrA | 7415 | c.114C>T | synonymous_variant | 0.4 |
gyrA | 7421 | c.120G>C | synonymous_variant | 0.4 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 760234 | p.Ser143Thr | missense_variant | 0.83 |
rpoB | 760244 | c.438G>C | synonymous_variant | 0.92 |
rpoB | 760253 | c.447T>C | synonymous_variant | 0.92 |
rpoB | 760263 | p.Met153Leu | missense_variant | 0.85 |
rpoB | 760266 | p.Met154Gln | missense_variant | 0.85 |
rpoB | 760274 | p.Glu156Asp | missense_variant | 0.79 |
rpoB | 760298 | c.492G>C | synonymous_variant | 0.67 |
rpoB | 760307 | c.501T>C | synonymous_variant | 0.5 |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.67 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.7 |
rpoB | 760433 | p.Asp209Glu | missense_variant | 0.7 |
rpoB | 760434 | p.Val210Ile | missense_variant | 0.7 |
rpoB | 760449 | p.Thr215Gln | missense_variant | 0.78 |
rpoB | 760460 | c.654G>C | synonymous_variant | 0.78 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.83 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.4 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.5 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.67 |
rpoB | 761252 | c.1446C>G | synonymous_variant | 0.67 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.67 |
rpoB | 761258 | c.1452G>A | synonymous_variant | 0.67 |
rpoB | 761261 | c.1455G>C | synonymous_variant | 1.0 |
rpoB | 761264 | c.1458C>G | synonymous_variant | 1.0 |
rpoB | 761273 | c.1467T>C | synonymous_variant | 1.0 |
rpoB | 761276 | c.1470G>C | synonymous_variant | 1.0 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 1.0 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 1.0 |
rpoC | 762917 | c.-453C>A | upstream_gene_variant | 1.0 |
rpoC | 762920 | c.-450C>G | upstream_gene_variant | 1.0 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 1.0 |
rpoC | 762926 | c.-444C>G | upstream_gene_variant | 1.0 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 1.0 |
rpoC | 762932 | c.-438G>C | upstream_gene_variant | 1.0 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.97 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.96 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.85 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.8 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.5 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.5 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.71 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 0.7 |
rpoC | 763053 | c.-317_-315delTTGinsCTC | upstream_gene_variant | 0.7 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 0.71 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.81 |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 0.8 |
rpoB | 763077 | p.Val1091Leu | missense_variant | 0.8 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.89 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.88 |
rpoB | 763126 | p.Pro1107Gln | missense_variant | 0.91 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.94 |
rpoC | 763160 | c.-210G>C | upstream_gene_variant | 1.0 |
rpoB | 763161 | p.Leu1119Met | missense_variant | 1.0 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 1.0 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 1.0 |
rpoB | 763170 | p.Leu1122Met | missense_variant | 1.0 |
rpoC | 763181 | c.-189G>C | upstream_gene_variant | 1.0 |
rpoC | 763187 | c.-183C>G | upstream_gene_variant | 1.0 |
rpoC | 763199 | c.-171G>C | upstream_gene_variant | 1.0 |
rpoC | 763462 | c.93G>C | synonymous_variant | 0.5 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.75 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.75 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.75 |
rpoC | 763504 | c.135C>T | synonymous_variant | 0.8 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.8 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 1.0 |
rpoC | 763517 | p.Lys50Gln | missense_variant | 1.0 |
rpoC | 763534 | c.165T>C | synonymous_variant | 1.0 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.83 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.83 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.75 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.75 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.75 |
rpoC | 763609 | c.240C>G | synonymous_variant | 0.57 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.4 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.85 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.93 |
rpoC | 763699 | c.330G>C | synonymous_variant | 0.93 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.93 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.93 |
rpoC | 763711 | c.342G>C | synonymous_variant | 1.0 |
rpoC | 763717 | c.348T>C | synonymous_variant | 1.0 |
rpoC | 763723 | c.354G>C | synonymous_variant | 1.0 |
rpoC | 763727 | p.Leu120Met | missense_variant | 1.0 |
rpoC | 763732 | c.363C>G | synonymous_variant | 1.0 |
rpoC | 763744 | c.375G>C | synonymous_variant | 1.0 |
rpoC | 764308 | c.939G>C | synonymous_variant | 0.83 |
rpoC | 764316 | p.Ala316Val | missense_variant | 0.78 |
rpoC | 764326 | c.957G>C | synonymous_variant | 0.86 |
rpoC | 764347 | c.978G>C | synonymous_variant | 0.88 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.89 |
rpoC | 764381 | c.1012_1013delTCinsAG | synonymous_variant | 0.71 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 1.0 |
rpoC | 764398 | c.1029G>C | synonymous_variant | 1.0 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 1.0 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 1.0 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 1.0 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 1.0 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 1.0 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 1.0 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 1.0 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.29 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 0.55 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.71 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.76 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.88 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.9 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.98 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.96 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.96 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.93 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.89 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.87 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.88 |
rpoC | 764740 | p.Met457Ile | missense_variant | 0.82 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.83 |
rpoC | 764750 | p.Val461Ile | missense_variant | 0.75 |
rpoC | 766986 | p.Val1206Glu | missense_variant | 1.0 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.89 |
rpoC | 767017 | c.3648C>G | synonymous_variant | 0.89 |
rpoC | 767020 | c.3651C>G | synonymous_variant | 0.89 |
rpoC | 767023 | p.Asp1218Glu | missense_variant | 0.89 |
rpoC | 767038 | c.3669G>C | synonymous_variant | 0.89 |
rpoC | 767059 | c.3690T>C | synonymous_variant | 0.56 |
rpoC | 767065 | c.3696G>C | synonymous_variant | 0.4 |
rpoC | 767083 | c.3714C>T | synonymous_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 1.0 |
rpsL | 781760 | c.201T>C | synonymous_variant | 1.0 |
rpsL | 781794 | p.Met79Leu | missense_variant | 0.73 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.73 |
rpsL | 781805 | c.246G>C | synonymous_variant | 0.73 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.73 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.73 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.73 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.67 |
rpsL | 781832 | c.273T>G | synonymous_variant | 0.57 |
rplC | 800672 | c.-137G>C | upstream_gene_variant | 0.5 |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 1.0 |
rplC | 800702 | c.-107G>T | upstream_gene_variant | 0.8 |
rplC | 800703 | c.-106T>C | upstream_gene_variant | 0.8 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.5 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.5 |
rplC | 800729 | c.-80G>C | upstream_gene_variant | 0.5 |
rplC | 800733 | c.-76A>G | upstream_gene_variant | 0.5 |
rplC | 800738 | c.-71T>C | upstream_gene_variant | 0.5 |
rplC | 800742 | c.-67G>T | upstream_gene_variant | 0.5 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472256 | n.411T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472333 | n.488G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472426 | n.581T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472507 | n.662C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472694 | n.849C>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473320 | n.1475G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473343 | n.1498G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473369 | n.1524A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473391 | n.-267C>T | upstream_gene_variant | 1.0 |
rrl | 1473844 | n.187C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1473870 | n.213G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473871 | n.214T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1473883 | n.226A>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1473887 | n.230T>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1473888 | n.231T>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1473890 | n.233T>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1473899 | n.242A>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474166 | n.509G>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474184 | n.527C>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474275 | n.618T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474280 | n.623C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474317 | n.660G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474466 | n.809G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474488 | n.831G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474516 | n.859C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474676 | n.1019T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474800 | n.1143T>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474935 | n.1278A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474938 | n.1281G>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474945 | n.1288C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475084 | n.1427G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475108 | n.1451C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475111 | n.1454G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475116 | n.1459G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475119 | n.1462C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475120 | n.1463G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475129 | n.1472G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475508 | n.1851A>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475536 | n.1879C>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475538 | n.1881T>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475548 | n.1891C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475549 | n.1892T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475550 | n.1893A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475649 | n.1992A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475652 | n.1995C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1475692 | n.2035G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475757 | n.2100A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475759 | n.2102C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475776 | n.2119G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476025 | n.2368G>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476032 | n.2375C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476033 | n.2376T>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476034 | n.2377C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476044 | n.2387T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476045 | n.2388G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476046 | n.2389G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476047 | n.2390G>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476076 | n.2419A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.93 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 1.0 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.86 |
rpsA | 1833704 | p.Ile55Val | missense_variant | 0.9 |
rpsA | 1833711 | p.Tyr57Phe | missense_variant | 0.86 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.92 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.92 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.92 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.92 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.92 |
rpsA | 1834054 | c.513C>G | synonymous_variant | 0.64 |
rpsA | 1834061 | p.Ile174Leu | missense_variant | 0.73 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.8 |
rpsA | 1834090 | c.549G>C | synonymous_variant | 1.0 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 1.0 |
rpsA | 1834109 | p.Trp190Leu | missense_variant | 0.83 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.83 |
rpsA | 1834123 | c.582C>G | synonymous_variant | 0.75 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.67 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.75 |
rpsA | 1834231 | c.690T>C | synonymous_variant | 0.6 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.6 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.6 |
rpsA | 1834243 | c.702G>C | synonymous_variant | 0.6 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.6 |
rpsA | 1834261 | c.720A>C | synonymous_variant | 0.6 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.67 |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.67 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.67 |
rpsA | 1834307 | p.Asp256Gln | missense_variant | 0.67 |
rpsA | 1834451 | c.910_912delTTGinsCTC | synonymous_variant | 0.67 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
fprA | 3474601 | p.Arg199Gly | missense_variant | 0.67 |
alr | 3840719 | c.702A>G | synonymous_variant | 1.0 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.67 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 1.0 |
clpC1 | 4038776 | p.Glu643Asp | missense_variant | 1.0 |
clpC1 | 4038795 | p.Ser637Thr | missense_variant | 1.0 |
clpC1 | 4038801 | p.Tyr635Phe | missense_variant | 1.0 |
clpC1 | 4038805 | p.Ile634Val | missense_variant | 1.0 |
clpC1 | 4038806 | p.Glu633Val | missense_variant | 1.0 |
clpC1 | 4038810 | p.Gln632Pro | missense_variant | 1.0 |
clpC1 | 4038818 | c.1887G>A | synonymous_variant | 0.38 |
clpC1 | 4038836 | c.1869G>C | synonymous_variant | 0.36 |
clpC1 | 4038839 | c.1866G>C | synonymous_variant | 0.45 |
clpC1 | 4038842 | c.1863G>C | synonymous_variant | 0.75 |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.5 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.6 |
clpC1 | 4038881 | c.1824C>T | synonymous_variant | 0.6 |
clpC1 | 4038890 | c.1815G>A | synonymous_variant | 0.75 |
clpC1 | 4039487 | c.1218G>C | synonymous_variant | 0.5 |
clpC1 | 4039508 | c.1197G>C | synonymous_variant | 0.83 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 1.0 |
clpC1 | 4039533 | p.Asn391Ser | missense_variant | 1.0 |
clpC1 | 4039550 | c.1155G>C | synonymous_variant | 1.0 |
clpC1 | 4039554 | p.Thr384Asn | missense_variant | 1.0 |
clpC1 | 4039691 | c.1014G>C | synonymous_variant | 0.6 |
clpC1 | 4039700 | c.1005C>T | synonymous_variant | 0.75 |
clpC1 | 4039711 | p.Ile332Phe | missense_variant | 0.5 |
clpC1 | 4039714 | p.Tyr331His | missense_variant | 0.5 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.75 |
clpC1 | 4039736 | c.969C>G | synonymous_variant | 0.5 |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.5 |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.5 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.6 |
clpC1 | 4039790 | c.915C>G | synonymous_variant | 0.87 |
clpC1 | 4039817 | c.888A>C | synonymous_variant | 1.0 |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 1.0 |
clpC1 | 4039829 | c.874_876delTTGinsCTC | synonymous_variant | 1.0 |
clpC1 | 4039838 | p.Leu289Ile | missense_variant | 1.0 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 1.0 |
clpC1 | 4039853 | p.Leu284Val | missense_variant | 0.92 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.88 |
clpC1 | 4039871 | c.834C>G | synonymous_variant | 0.67 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.5 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 0.73 |
clpC1 | 4040000 | p.His235Lys | missense_variant | 0.73 |
clpC1 | 4040003 | c.702G>C | synonymous_variant | 0.73 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.75 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.79 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.85 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.85 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.87 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.83 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.83 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 1.0 |
clpC1 | 4040083 | p.Thr208Ser | missense_variant | 0.6 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.67 |
clpC1 | 4040090 | c.615T>G | synonymous_variant | 0.67 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.67 |
clpC1 | 4040096 | p.Val203Ile | missense_variant | 0.67 |
clpC1 | 4040108 | c.597G>C | synonymous_variant | 0.67 |
clpC1 | 4040291 | c.414G>C | synonymous_variant | 0.78 |
clpC1 | 4040307 | p.Arg133Lys | missense_variant | 0.78 |
clpC1 | 4040310 | p.Thr132Asn | missense_variant | 0.78 |
clpC1 | 4040312 | c.393G>C | synonymous_variant | 0.78 |
clpC1 | 4040315 | p.Glu130Asp | missense_variant | 0.78 |
clpC1 | 4040333 | c.372G>C | synonymous_variant | 0.75 |
clpC1 | 4040348 | c.357G>C | synonymous_variant | 0.5 |
clpC1 | 4040636 | c.69C>G | synonymous_variant | 0.5 |
clpC1 | 4040643 | p.Arg21Lys | missense_variant | 0.5 |
clpC1 | 4040645 | c.60C>G | synonymous_variant | 0.5 |
clpC1 | 4040654 | c.51G>A | synonymous_variant | 0.5 |
clpC1 | 4040657 | c.48T>C | synonymous_variant | 0.5 |
clpC1 | 4040660 | c.45G>C | synonymous_variant | 0.5 |
clpC1 | 4040669 | c.36C>G | synonymous_variant | 0.5 |
clpC1 | 4040672 | c.31_33delAGGinsCGT | synonymous_variant | 0.5 |
clpC1 | 4040675 | c.30C>T | synonymous_variant | 0.67 |
ubiA | 4269978 | c.-145G>C | upstream_gene_variant | 1.0 |
whiB6 | 4338493 | p.Thr10Lys | missense_variant | 0.67 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |