TB-Profiler result

Run: ERR036207
Summary

Run ID: ERR036207

Sample name:

Date: 31-03-2023 08:29:39

Number of reads: 113193

Percentage reads mapped: 3.94

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.93
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.98 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7385 c.84C>T synonymous_variant 0.5
gyrA 7386 p.Ile29Leu missense_variant 0.5
gyrA 7394 c.93T>C synonymous_variant 0.5
gyrA 7401 p.Ser34Ala missense_variant 0.5
gyrA 7406 c.105G>C synonymous_variant 0.5
gyrA 7415 c.114C>T synonymous_variant 0.4
gyrA 7421 c.120G>C synonymous_variant 0.4
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760234 p.Ser143Thr missense_variant 0.83
rpoB 760244 c.438G>C synonymous_variant 0.92
rpoB 760253 c.447T>C synonymous_variant 0.92
rpoB 760263 p.Met153Leu missense_variant 0.85
rpoB 760266 p.Met154Gln missense_variant 0.85
rpoB 760274 p.Glu156Asp missense_variant 0.79
rpoB 760298 c.492G>C synonymous_variant 0.67
rpoB 760307 c.501T>C synonymous_variant 0.5
rpoB 760406 c.600G>C synonymous_variant 0.67
rpoB 760430 c.624T>C synonymous_variant 0.7
rpoB 760433 p.Asp209Glu missense_variant 0.7
rpoB 760434 p.Val210Ile missense_variant 0.7
rpoB 760449 p.Thr215Gln missense_variant 0.78
rpoB 760460 c.654G>C synonymous_variant 0.78
rpoB 760475 c.669A>G synonymous_variant 0.83
rpoB 761213 c.1407G>C synonymous_variant 0.4
rpoB 761234 c.1428G>C synonymous_variant 0.5
rpoB 761249 c.1443A>G synonymous_variant 0.67
rpoB 761252 c.1446C>G synonymous_variant 0.67
rpoB 761255 c.1449T>G synonymous_variant 0.67
rpoB 761258 c.1452G>A synonymous_variant 0.67
rpoB 761261 c.1455G>C synonymous_variant 1.0
rpoB 761264 c.1458C>G synonymous_variant 1.0
rpoB 761273 c.1467T>C synonymous_variant 1.0
rpoB 761276 c.1470G>C synonymous_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoC 762917 c.-453C>A upstream_gene_variant 1.0
rpoC 762920 c.-450C>G upstream_gene_variant 1.0
rpoC 762923 c.-447C>G upstream_gene_variant 1.0
rpoC 762926 c.-444C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762932 c.-438G>C upstream_gene_variant 1.0
rpoC 762959 c.-411G>C upstream_gene_variant 0.97
rpoC 762962 c.-408C>T upstream_gene_variant 0.96
rpoC 762989 c.-381G>C upstream_gene_variant 0.85
rpoC 762995 c.-375G>T upstream_gene_variant 0.8
rpoC 763028 c.-342T>C upstream_gene_variant 0.5
rpoC 763031 c.-339T>C upstream_gene_variant 0.5
rpoB 763038 p.Thr1078Ala missense_variant 0.71
rpoC 763052 c.-318G>C upstream_gene_variant 0.7
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.7
rpoC 763058 c.-312C>G upstream_gene_variant 0.71
rpoC 763070 c.-300T>C upstream_gene_variant 0.81
rpoB 763075 p.Thr1090Ile missense_variant 0.8
rpoB 763077 p.Val1091Leu missense_variant 0.8
rpoC 763094 c.-276G>C upstream_gene_variant 0.89
rpoC 763115 c.-255T>C upstream_gene_variant 0.88
rpoB 763126 p.Pro1107Gln missense_variant 0.91
rpoC 763133 c.-237G>C upstream_gene_variant 0.94
rpoC 763160 c.-210G>C upstream_gene_variant 1.0
rpoB 763161 p.Leu1119Met missense_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763169 c.-201A>G upstream_gene_variant 1.0
rpoB 763170 p.Leu1122Met missense_variant 1.0
rpoC 763181 c.-189G>C upstream_gene_variant 1.0
rpoC 763187 c.-183C>G upstream_gene_variant 1.0
rpoC 763199 c.-171G>C upstream_gene_variant 1.0
rpoC 763462 c.93G>C synonymous_variant 0.5
rpoC 763468 c.99G>C synonymous_variant 0.75
rpoC 763486 c.117T>G synonymous_variant 0.75
rpoC 763492 c.123G>C synonymous_variant 0.75
rpoC 763504 c.135C>T synonymous_variant 0.8
rpoC 763507 c.138G>C synonymous_variant 0.8
rpoC 763511 p.Cys48Gly missense_variant 1.0
rpoC 763517 p.Lys50Gln missense_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 0.83
rpoC 763550 p.Tyr61Ala missense_variant 0.83
rpoC 763570 c.201G>C synonymous_variant 0.75
rpoC 763573 c.204G>C synonymous_variant 0.75
rpoC 763589 p.Ile74Val missense_variant 0.75
rpoC 763609 c.240C>G synonymous_variant 0.57
rpoC 763615 c.246G>C synonymous_variant 0.4
rpoC 763660 c.291T>C synonymous_variant 0.85
rpoC 763696 c.327T>C synonymous_variant 0.93
rpoC 763699 c.330G>C synonymous_variant 0.93
rpoC 763702 c.333C>G synonymous_variant 0.93
rpoC 763708 c.339G>C synonymous_variant 0.93
rpoC 763711 c.342G>C synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763723 c.354G>C synonymous_variant 1.0
rpoC 763727 p.Leu120Met missense_variant 1.0
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 764308 c.939G>C synonymous_variant 0.83
rpoC 764316 p.Ala316Val missense_variant 0.78
rpoC 764326 c.957G>C synonymous_variant 0.86
rpoC 764347 c.978G>C synonymous_variant 0.88
rpoC 764371 c.1002G>C synonymous_variant 0.89
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.71
rpoC 764387 c.1018T>C synonymous_variant 1.0
rpoC 764398 c.1029G>C synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764470 c.1101C>G synonymous_variant 1.0
rpoC 764485 c.1116G>C synonymous_variant 1.0
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764498 p.Ser377Ala missense_variant 1.0
rpoC 764503 c.1134G>C synonymous_variant 1.0
rpoC 764521 c.1152T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 0.29
rpoC 764587 c.1218C>G synonymous_variant 0.55
rpoC 764602 c.1233C>T synonymous_variant 0.71
rpoC 764605 c.1236G>C synonymous_variant 0.76
rpoC 764611 c.1242G>C synonymous_variant 0.88
rpoC 764632 c.1263T>C synonymous_variant 0.9
rpoC 764635 c.1266C>G synonymous_variant 1.0
rpoC 764650 c.1281G>C synonymous_variant 0.98
rpoC 764660 p.Val431Ile missense_variant 0.96
rpoC 764668 c.1299C>T synonymous_variant 0.96
rpoC 764683 c.1314G>C synonymous_variant 0.93
rpoC 764706 p.Leu446Gln missense_variant 0.89
rpoC 764713 c.1344G>C synonymous_variant 0.87
rpoC 764716 c.1347G>C synonymous_variant 0.88
rpoC 764740 p.Met457Ile missense_variant 0.82
rpoC 764746 c.1377G>C synonymous_variant 0.83
rpoC 764750 p.Val461Ile missense_variant 0.75
rpoC 766986 p.Val1206Glu missense_variant 1.0
rpoC 767014 c.3645G>C synonymous_variant 0.89
rpoC 767017 c.3648C>G synonymous_variant 0.89
rpoC 767020 c.3651C>G synonymous_variant 0.89
rpoC 767023 p.Asp1218Glu missense_variant 0.89
rpoC 767038 c.3669G>C synonymous_variant 0.89
rpoC 767059 c.3690T>C synonymous_variant 0.56
rpoC 767065 c.3696G>C synonymous_variant 0.4
rpoC 767083 c.3714C>T synonymous_variant 1.0
mmpL5 777399 p.Thr361Arg missense_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 1.0
rpsL 781794 p.Met79Leu missense_variant 0.73
rpsL 781802 c.243G>C synonymous_variant 0.73
rpsL 781805 c.246G>C synonymous_variant 0.73
rpsL 781808 c.249C>T synonymous_variant 0.73
rpsL 781814 c.255C>T synonymous_variant 0.73
rpsL 781817 c.258G>T synonymous_variant 0.73
rpsL 781829 c.270G>C synonymous_variant 0.67
rpsL 781832 c.273T>G synonymous_variant 0.57
rplC 800672 c.-137G>C upstream_gene_variant 0.5
rplC 800693 c.-116A>C upstream_gene_variant 1.0
rplC 800702 c.-107G>T upstream_gene_variant 0.8
rplC 800703 c.-106T>C upstream_gene_variant 0.8
rplC 800720 c.-89T>C upstream_gene_variant 0.5
rplC 800723 c.-86C>G upstream_gene_variant 0.5
rplC 800729 c.-80G>C upstream_gene_variant 0.5
rplC 800733 c.-76A>G upstream_gene_variant 0.5
rplC 800738 c.-71T>C upstream_gene_variant 0.5
rplC 800742 c.-67G>T upstream_gene_variant 0.5
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 1.0
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.98
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.98
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.98
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.98
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.98
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.99
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.95
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.93
rrs 1472256 n.411T>C non_coding_transcript_exon_variant 0.92
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.5
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 1.0
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 1.0
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.98
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.96
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.96
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.92
rrs 1472426 n.581T>C non_coding_transcript_exon_variant 0.9
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.71
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.93
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.93
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.94
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.96
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.98
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.98
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.98
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.98
rrs 1472606 n.761C>G non_coding_transcript_exon_variant 0.99
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.99
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.99
rrs 1472645 n.800G>C non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472660 n.815T>A non_coding_transcript_exon_variant 1.0
rrs 1472666 n.821G>T non_coding_transcript_exon_variant 1.0
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.8
rrs 1472687 n.843dupT non_coding_transcript_exon_variant 0.75
rrs 1472694 n.849C>A non_coding_transcript_exon_variant 0.88
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.9
rrs 1472714 n.869A>T non_coding_transcript_exon_variant 0.96
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.99
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.99
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.88
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.86
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.86
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.88
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 1.0
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.99
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 1.0
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1472993 n.1148G>T non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 1.0
rrs 1473097 n.1252G>A non_coding_transcript_exon_variant 1.0
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.98
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.98
rrs 1473134 n.1289T>C non_coding_transcript_exon_variant 0.99
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.99
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.99
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.99
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.98
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.97
rrs 1473269 n.1424C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 1.0
rrs 1473320 n.1475G>A non_coding_transcript_exon_variant 1.0
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 1.0
rrs 1473343 n.1498G>T non_coding_transcript_exon_variant 0.23
rrs 1473369 n.1524A>G non_coding_transcript_exon_variant 0.29
rrl 1473391 n.-267C>T upstream_gene_variant 1.0
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.71
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.75
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.75
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.75
rrl 1473883 n.226A>G non_coding_transcript_exon_variant 0.82
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.82
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.82
rrl 1473890 n.233T>C non_coding_transcript_exon_variant 0.9
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.9
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.9
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.71
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.78
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.91
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 0.91
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.95
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 0.95
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.97
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474265 n.608G>T non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474275 n.618T>A non_coding_transcript_exon_variant 1.0
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 1.0
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.75
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.95
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.95
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.95
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.95
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.95
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.95
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.95
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 1.0
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>C non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>G non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.99
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.97
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 0.96
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.94
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.97
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.97
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.94
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.94
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.89
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.88
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.6
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.87
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.86
rrl 1474800 n.1143T>C non_coding_transcript_exon_variant 0.9
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.93
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.93
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.93
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.93
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.96
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.96
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.96
rrl 1474920 n.1263G>A non_coding_transcript_exon_variant 0.95
rrl 1474935 n.1278A>G non_coding_transcript_exon_variant 0.88
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.77
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.67
rrl 1475084 n.1427G>T non_coding_transcript_exon_variant 0.75
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.92
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.92
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.92
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.92
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.92
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 1.0
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 1.0
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.93
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.92
rrl 1475536 n.1879C>A non_coding_transcript_exon_variant 0.89
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.89
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.89
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.89
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.89
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.89
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.92
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.4
rrl 1475652 n.1995C>T non_coding_transcript_exon_variant 0.5
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.75
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.86
rrl 1475692 n.2035G>C non_coding_transcript_exon_variant 1.0
rrl 1475757 n.2100A>C non_coding_transcript_exon_variant 0.88
rrl 1475759 n.2102C>G non_coding_transcript_exon_variant 0.88
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.88
rrl 1475776 n.2119G>C non_coding_transcript_exon_variant 0.88
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.97
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.97
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.97
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.97
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.99
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.99
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.97
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.99
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.97
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.97
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.95
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.94
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.89
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.89
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.89
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.92
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.92
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.88
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.88
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.88
rrl 1476044 n.2387T>C non_coding_transcript_exon_variant 0.78
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.88
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.88
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.88
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.88
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.64
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.69
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.86
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.95
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.98
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.97
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.94
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.94
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.93
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.93
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.78
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.78
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.78
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.78
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.88
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.92
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.9
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.93
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.97
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.98
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.99
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.93
fabG1 1673449 p.Thr4Pro missense_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 0.86
rpsA 1833704 p.Ile55Val missense_variant 0.9
rpsA 1833711 p.Tyr57Phe missense_variant 0.86
rpsA 1833721 c.180A>G synonymous_variant 0.92
rpsA 1833727 c.186G>C synonymous_variant 0.92
rpsA 1833734 p.Ala65Ser missense_variant 0.92
rpsA 1833742 c.201A>G synonymous_variant 0.92
rpsA 1833745 c.204G>C synonymous_variant 0.92
rpsA 1834054 c.513C>G synonymous_variant 0.64
rpsA 1834061 p.Ile174Leu missense_variant 0.73
rpsA 1834069 c.528G>C synonymous_variant 0.8
rpsA 1834090 c.549G>C synonymous_variant 1.0
rpsA 1834102 c.561T>C synonymous_variant 1.0
rpsA 1834109 p.Trp190Leu missense_variant 0.83
rpsA 1834114 c.573G>C synonymous_variant 0.83
rpsA 1834123 c.582C>G synonymous_variant 0.75
rpsA 1834210 c.669C>T synonymous_variant 0.67
rpsA 1834222 c.681T>C synonymous_variant 0.75
rpsA 1834231 c.690T>C synonymous_variant 0.6
rpsA 1834234 c.693G>C synonymous_variant 0.6
rpsA 1834240 c.699T>C synonymous_variant 0.6
rpsA 1834243 c.702G>C synonymous_variant 0.6
rpsA 1834249 c.708T>C synonymous_variant 0.6
rpsA 1834261 c.720A>C synonymous_variant 0.6
rpsA 1834298 p.Gln253Glu missense_variant 0.67
rpsA 1834303 c.762T>G synonymous_variant 0.67
rpsA 1834306 c.765T>C synonymous_variant 0.67
rpsA 1834307 p.Asp256Gln missense_variant 0.67
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.67
rpsA 1834468 c.927A>G synonymous_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 1.0
fprA 3474601 p.Arg199Gly missense_variant 0.67
alr 3840719 c.702A>G synonymous_variant 1.0
ddn 3987013 p.Gly57Ala missense_variant 0.67
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038773 c.1932T>C synonymous_variant 1.0
clpC1 4038776 p.Glu643Asp missense_variant 1.0
clpC1 4038795 p.Ser637Thr missense_variant 1.0
clpC1 4038801 p.Tyr635Phe missense_variant 1.0
clpC1 4038805 p.Ile634Val missense_variant 1.0
clpC1 4038806 p.Glu633Val missense_variant 1.0
clpC1 4038810 p.Gln632Pro missense_variant 1.0
clpC1 4038818 c.1887G>A synonymous_variant 0.38
clpC1 4038836 c.1869G>C synonymous_variant 0.36
clpC1 4038839 c.1866G>C synonymous_variant 0.45
clpC1 4038842 c.1863G>C synonymous_variant 0.75
clpC1 4038860 c.1845G>C synonymous_variant 0.5
clpC1 4038878 c.1827A>G synonymous_variant 0.6
clpC1 4038881 c.1824C>T synonymous_variant 0.6
clpC1 4038890 c.1815G>A synonymous_variant 0.75
clpC1 4039487 c.1218G>C synonymous_variant 0.5
clpC1 4039508 c.1197G>C synonymous_variant 0.83
clpC1 4039526 c.1179G>C synonymous_variant 1.0
clpC1 4039533 p.Asn391Ser missense_variant 1.0
clpC1 4039550 c.1155G>C synonymous_variant 1.0
clpC1 4039554 p.Thr384Asn missense_variant 1.0
clpC1 4039691 c.1014G>C synonymous_variant 0.6
clpC1 4039700 c.1005C>T synonymous_variant 0.75
clpC1 4039711 p.Ile332Phe missense_variant 0.5
clpC1 4039714 p.Tyr331His missense_variant 0.5
clpC1 4039724 c.981A>G synonymous_variant 0.75
clpC1 4039736 c.969C>G synonymous_variant 0.5
clpC1 4039739 c.966C>G synonymous_variant 0.5
clpC1 4039751 c.954A>G synonymous_variant 0.5
clpC1 4039778 c.927A>G synonymous_variant 0.6
clpC1 4039790 c.915C>G synonymous_variant 0.87
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>G synonymous_variant 1.0
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 1.0
clpC1 4039838 p.Leu289Ile missense_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039853 p.Leu284Val missense_variant 0.92
clpC1 4039865 c.840T>C synonymous_variant 0.88
clpC1 4039871 c.834C>G synonymous_variant 0.67
clpC1 4039979 c.726C>G synonymous_variant 0.5
clpC1 4039994 p.Glu237Asp missense_variant 0.73
clpC1 4040000 p.His235Lys missense_variant 0.73
clpC1 4040003 c.702G>C synonymous_variant 0.73
clpC1 4040009 c.696C>G synonymous_variant 0.75
clpC1 4040018 c.687G>C synonymous_variant 0.79
clpC1 4040021 c.684A>C synonymous_variant 0.85
clpC1 4040024 c.681A>G synonymous_variant 0.85
clpC1 4040033 c.672G>C synonymous_variant 0.87
clpC1 4040063 c.642G>C synonymous_variant 0.83
clpC1 4040066 c.639G>C synonymous_variant 0.83
clpC1 4040069 c.636G>C synonymous_variant 1.0
clpC1 4040083 p.Thr208Ser missense_variant 0.6
clpC1 4040087 c.618G>C synonymous_variant 0.67
clpC1 4040090 c.615T>G synonymous_variant 0.67
clpC1 4040093 c.612C>G synonymous_variant 0.67
clpC1 4040096 p.Val203Ile missense_variant 0.67
clpC1 4040108 c.597G>C synonymous_variant 0.67
clpC1 4040291 c.414G>C synonymous_variant 0.78
clpC1 4040307 p.Arg133Lys missense_variant 0.78
clpC1 4040310 p.Thr132Asn missense_variant 0.78
clpC1 4040312 c.393G>C synonymous_variant 0.78
clpC1 4040315 p.Glu130Asp missense_variant 0.78
clpC1 4040333 c.372G>C synonymous_variant 0.75
clpC1 4040348 c.357G>C synonymous_variant 0.5
clpC1 4040636 c.69C>G synonymous_variant 0.5
clpC1 4040643 p.Arg21Lys missense_variant 0.5
clpC1 4040645 c.60C>G synonymous_variant 0.5
clpC1 4040654 c.51G>A synonymous_variant 0.5
clpC1 4040657 c.48T>C synonymous_variant 0.5
clpC1 4040660 c.45G>C synonymous_variant 0.5
clpC1 4040669 c.36C>G synonymous_variant 0.5
clpC1 4040672 c.31_33delAGGinsCGT synonymous_variant 0.5
clpC1 4040675 c.30C>T synonymous_variant 0.67
ubiA 4269978 c.-145G>C upstream_gene_variant 1.0
whiB6 4338493 p.Thr10Lys missense_variant 0.67
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0