Rv0668 - c.1344G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
20 Sensitive
20 RR-TB
19 HR-TB
21 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 5 |
| lineage4.9 | 45 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.3 | 3 |
| lineage4.8 | 7 |
| lineage6.2.3 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.7 | 2 |
| lineage1.1.3.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage3 | 2 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.1.1.1 | 2 |
| lineage4.1.3 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.1.2 | 2 |
| lineage2.2.1 | 5 |
| lineage4.1 | 1 |
| lineage3.1.1 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.8.1 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.2.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.2.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 122 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4820151 | Other | lineage4.8 | None | ERR10796630 | Other | lineage6.2.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR14782054 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR5979407 | Other | lineage3 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR18572454 | RR-TB | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3105762 | Sensitive | lineage4.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818128 | Other | lineage4.1.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819241 | Other | lineage4.9 | None | ERR4821214 | Other | lineage1.2.1.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR29772570 | Other | lineage4.9 | None | SRR18572456 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR4799025 | Other | lineage4.8 | None | ERR867567 | RR-TB | lineage3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4769493 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None |
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