TB-Profiler result

Run: ERR4799989
Summary

Run ID: ERR4799989

Sample name:

Date: 01-04-2023 09:31:10

Number of reads: 2246188

Percentage reads mapped: 74.11

Strain: lineage2.2.1.2

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 0.96
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.98
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.96
lineage2.2.1.2 East-Asian (Beijing) Beijing-RD142 RD105;RD207;RD181;RD142 0.95
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7582 p.Asp94Gly missense_variant 0.92 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761155 p.Ser450Leu missense_variant 0.74 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 0.78 streptomycin
fabG1 1673432 c.-8T>C upstream_gene_variant 0.93 isoniazid, ethionamide
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
pncA 2288730 p.Ala171Val missense_variant 0.95 pyrazinamide
embB 4247431 p.Met306Ile missense_variant 0.98 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6571 c.-731T>C upstream_gene_variant 0.13
gyrA 6598 c.-704C>G upstream_gene_variant 0.13
gyrA 6610 c.-692C>G upstream_gene_variant 0.14
gyrA 6613 c.-689A>G upstream_gene_variant 0.14
gyrA 6616 c.-686A>G upstream_gene_variant 0.14
gyrA 6622 c.-680C>T upstream_gene_variant 0.15
gyrA 6631 c.-671C>T upstream_gene_variant 0.16
gyrA 6634 c.-668T>C upstream_gene_variant 0.14
gyrA 6637 c.-665T>G upstream_gene_variant 0.15
gyrA 6640 c.-662A>C upstream_gene_variant 0.14
gyrA 6643 c.-659A>G upstream_gene_variant 0.14
gyrA 6646 c.-656C>T upstream_gene_variant 0.17
gyrA 6655 c.-647T>C upstream_gene_variant 0.16
gyrA 6673 c.-629A>C upstream_gene_variant 0.18
gyrA 6676 c.-626T>G upstream_gene_variant 0.18
gyrA 6700 c.-602T>C upstream_gene_variant 0.2
gyrA 6703 c.-599G>C upstream_gene_variant 0.19
gyrA 6709 c.-593A>G upstream_gene_variant 0.19
gyrA 6712 c.-590G>C upstream_gene_variant 0.13
gyrA 6724 c.-578G>C upstream_gene_variant 0.12
gyrA 6730 c.-572A>G upstream_gene_variant 0.15
gyrA 6742 c.-560A>G upstream_gene_variant 0.16
gyrA 6751 c.-551G>C upstream_gene_variant 0.13
gyrA 6775 c.-527G>T upstream_gene_variant 0.16
gyrA 7084 c.-218A>G upstream_gene_variant 0.14
gyrA 7100 c.-202T>C upstream_gene_variant 0.12
gyrA 7123 c.-179C>G upstream_gene_variant 0.13
gyrA 7126 c.-176G>C upstream_gene_variant 0.12
gyrA 7129 c.-173T>C upstream_gene_variant 0.12
gyrA 7132 c.-170T>C upstream_gene_variant 0.13
gyrA 7135 c.-167G>C upstream_gene_variant 0.13
gyrA 7136 c.-166T>C upstream_gene_variant 0.14
gyrA 7144 c.-158A>G upstream_gene_variant 0.15
gyrA 7150 c.-152G>C upstream_gene_variant 0.17
gyrA 7153 c.-149G>C upstream_gene_variant 0.18
gyrA 7177 c.-125G>A upstream_gene_variant 0.17
gyrA 7178 c.-124T>C upstream_gene_variant 0.17
gyrA 7186 c.-116C>G upstream_gene_variant 0.17
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8897 c.1596T>C synonymous_variant 0.13
gyrA 8903 c.1602T>C synonymous_variant 0.13
gyrA 8915 c.1614A>G synonymous_variant 0.13
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 0.99
ccsA 620625 p.Ile245Met missense_variant 0.98
rpoB 760418 c.612G>C synonymous_variant 0.14
rpoB 760424 c.618C>G synonymous_variant 0.14
rpoB 760430 c.624T>C synonymous_variant 0.14
rpoB 760481 c.675G>C synonymous_variant 0.12
rpoB 760946 c.1140A>G synonymous_variant 0.19
rpoB 760965 p.Met387Leu missense_variant 0.2
rpoB 760973 c.1167G>T synonymous_variant 0.27
rpoB 760982 c.1176G>C synonymous_variant 0.25
rpoB 760985 c.1179G>C synonymous_variant 0.25
rpoB 760988 c.1182C>G synonymous_variant 0.25
rpoB 760991 c.1185G>C synonymous_variant 0.25
rpoB 760997 c.1191G>C synonymous_variant 0.29
rpoB 761006 c.1200C>G synonymous_variant 0.27
rpoB 761015 c.1209G>C synonymous_variant 0.37
rpoB 761027 c.1221A>C synonymous_variant 0.47
rpoB 761036 c.1230G>C synonymous_variant 0.35
rpoB 761037 c.1231T>C synonymous_variant 0.35
rpoB 761051 c.1245G>T synonymous_variant 0.32
rpoB 761054 c.1248G>C synonymous_variant 0.35
rpoB 761057 c.1251G>C synonymous_variant 0.35
rpoB 761060 c.1254C>G synonymous_variant 0.38
rpoB 761063 c.1257C>G synonymous_variant 0.38
rpoB 761087 c.1281C>G synonymous_variant 0.21
rpoB 761088 c.1282_1284delAGCinsTCG synonymous_variant 0.21
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.21
rpoB 761102 c.1296A>G synonymous_variant 0.2
rpoB 761132 c.1326G>T synonymous_variant 0.14
rpoB 761133 c.1327T>C synonymous_variant 0.14
rpoB 761147 c.1341C>T synonymous_variant 0.22
rpoB 761150 c.1344A>T synonymous_variant 0.24
rpoB 761165 c.1359G>C synonymous_variant 0.24
rpoB 761171 c.1365C>T synonymous_variant 0.22
rpoB 761180 c.1374A>C synonymous_variant 0.19
rpoB 761189 c.1383T>C synonymous_variant 0.19
rpoB 761195 c.1389G>C synonymous_variant 0.24
rpoB 761198 c.1392G>C synonymous_variant 0.26
rpoB 761213 c.1407G>C synonymous_variant 0.28
rpoB 761217 p.Pro471Ser missense_variant 0.26
rpoB 761234 c.1428G>C synonymous_variant 0.27
rpoB 761249 c.1443A>G synonymous_variant 0.26
rpoB 761258 c.1452G>A synonymous_variant 0.26
rpoB 761261 c.1455G>C synonymous_variant 0.26
rpoB 761264 c.1458C>G synonymous_variant 0.27
rpoB 761318 c.1512G>C synonymous_variant 0.16
rpoB 761327 c.1521A>G synonymous_variant 0.14
rpoB 761330 c.1524G>C synonymous_variant 0.14
rpoB 761555 c.1749G>C synonymous_variant 0.17
rpoB 761558 c.1752C>G synonymous_variant 0.19
rpoB 761570 c.1764T>C synonymous_variant 0.2
rpoB 761573 c.1767C>G synonymous_variant 0.19
rpoB 761579 c.1773G>C synonymous_variant 0.19
rpoB 761600 c.1794T>C synonymous_variant 0.2
rpoB 761612 c.1806G>T synonymous_variant 0.18
rpoB 761615 c.1809A>G synonymous_variant 0.17
rpoB 761627 c.1821C>T synonymous_variant 0.16
rpoB 761636 c.1830G>T synonymous_variant 0.15
rpoB 761645 c.1839C>G synonymous_variant 0.15
rpoB 761648 c.1842T>C synonymous_variant 0.15
rpoB 761666 c.1860G>C synonymous_variant 0.13
rpoC 762959 c.-411G>C upstream_gene_variant 0.15
rpoC 762995 c.-375G>T upstream_gene_variant 0.17
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.15
rpoC 763040 c.-330C>G upstream_gene_variant 0.2
rpoC 763053 c.-317T>C upstream_gene_variant 0.21
rpoC 763070 c.-300T>C upstream_gene_variant 0.22
rpoC 763088 c.-282C>G upstream_gene_variant 0.19
rpoC 763094 c.-276G>C upstream_gene_variant 0.18
rpoC 763115 c.-255T>C upstream_gene_variant 0.16
rpoC 763127 c.-243G>C upstream_gene_variant 0.16
rpoC 763136 c.-234C>T upstream_gene_variant 0.16
rpoC 763142 c.-228C>G upstream_gene_variant 0.17
rpoC 763157 c.-213G>T upstream_gene_variant 0.15
rpoC 763166 c.-204A>G upstream_gene_variant 0.15
rpoC 763172 c.-198G>C upstream_gene_variant 0.13
rpoC 763468 c.99G>C synonymous_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.14
rpoC 763495 c.126G>A synonymous_variant 0.15
rpoC 763589 p.Ile74Val missense_variant 0.14
rpoC 763642 c.273G>C synonymous_variant 0.15
rpoC 763660 c.291T>G synonymous_variant 0.14
rpoC 763669 c.300C>G synonymous_variant 0.13
rpoC 764557 c.1188C>T synonymous_variant 0.15
rpoC 764575 c.1206T>G synonymous_variant 0.16
rpoC 764605 c.1236G>C synonymous_variant 0.19
rpoC 764611 c.1242G>T synonymous_variant 0.18
rpoC 764623 c.1254C>G synonymous_variant 0.16
rpoC 764632 c.1263T>C synonymous_variant 0.15
rpoC 764650 c.1281G>T synonymous_variant 0.14
rpoC 764692 c.1323C>T synonymous_variant 0.18
rpoC 764701 c.1332C>G synonymous_variant 0.2
rpoC 764713 c.1344G>C synonymous_variant 0.2
rpoC 764716 c.1347G>C synonymous_variant 0.19
rpoC 764746 c.1377G>T synonymous_variant 0.21
rpoC 764752 c.1383G>C synonymous_variant 0.21
rpoC 764758 c.1389C>G synonymous_variant 0.22
rpoC 764764 c.1395T>C synonymous_variant 0.27
rpoC 764797 c.1428G>C synonymous_variant 0.26
rpoC 764803 c.1434C>T synonymous_variant 0.26
rpoC 764809 c.1440C>T synonymous_variant 0.26
rpoC 764815 c.1446A>G synonymous_variant 0.25
rpoC 764817 p.Val483Gly missense_variant 0.69
rpoC 764827 c.1458G>C synonymous_variant 0.22
rpoC 764858 c.1489T>C synonymous_variant 0.13
rpoC 766291 c.2922G>C synonymous_variant 0.13
rpoC 766297 c.2928G>C synonymous_variant 0.13
rpoC 767119 c.3750A>G synonymous_variant 0.14
rpoC 767134 c.3765C>T synonymous_variant 0.19
rpoC 767138 c.3769C>T synonymous_variant 0.21
rpoC 767149 c.3780C>T synonymous_variant 0.17
rpoC 767155 c.3786C>G synonymous_variant 0.13
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 0.94
mmpS5 779615 c.-710C>G upstream_gene_variant 0.96
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781628 c.69T>G synonymous_variant 0.13
rpsL 781658 c.99A>G synonymous_variant 0.17
rpsL 781682 c.123T>C synonymous_variant 0.19
rpsL 781685 c.126G>C synonymous_variant 0.19
rpsL 781706 c.147T>G synonymous_variant 0.19
rpsL 781709 c.150G>C synonymous_variant 0.18
rpsL 781715 c.156T>C synonymous_variant 0.18
rpsL 781721 c.162C>T synonymous_variant 0.17
rpsL 781728 c.169T>C synonymous_variant 0.16
rpsL 781736 c.177T>C synonymous_variant 0.15
rpsL 781754 c.195G>C synonymous_variant 0.14
rpsL 781760 c.201T>C synonymous_variant 0.15
rpsL 781763 c.204C>G synonymous_variant 0.15
rplC 800612 c.-197A>G upstream_gene_variant 0.15
rplC 800618 c.-191T>C upstream_gene_variant 0.18
rplC 800633 c.-176T>C upstream_gene_variant 0.22
rplC 800645 c.-164C>G upstream_gene_variant 0.22
rplC 800648 c.-161A>T upstream_gene_variant 0.21
rplC 800651 c.-158G>C upstream_gene_variant 0.22
rplC 800678 c.-131C>T upstream_gene_variant 0.2
rplC 800684 c.-125G>A upstream_gene_variant 0.2
rplC 800690 c.-119C>T upstream_gene_variant 0.2
rplC 800693 c.-116A>C upstream_gene_variant 0.19
rplC 800702 c.-107G>C upstream_gene_variant 0.19
rplC 800703 c.-106_-104delTTGinsCTT upstream_gene_variant 0.17
rplC 800715 c.-94A>C upstream_gene_variant 0.19
rplC 800720 c.-89T>C upstream_gene_variant 0.19
rplC 800744 c.-65G>C upstream_gene_variant 0.13
rplC 800747 c.-62C>G upstream_gene_variant 0.13
rplC 800759 c.-50C>T upstream_gene_variant 0.13
rplC 800768 c.-41C>G upstream_gene_variant 0.14
fbiC 1303614 c.684C>G synonymous_variant 0.13
fbiC 1303617 c.687C>G synonymous_variant 0.13
Rv1258c 1406760 c.580_581insC frameshift_variant 0.97
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.41
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.41
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.4
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.4
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.5
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.48
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.41
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.44
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.43
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.43
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.43
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.43
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.5
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.5
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.51
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.5
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.49
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.43
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.27
rrs 1472286 n.441C>A non_coding_transcript_exon_variant 0.17
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.17
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.17
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.17
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.19
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.17
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.19
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.19
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.19
rrs 1472328 n.483G>T non_coding_transcript_exon_variant 0.19
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.2
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.2
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.39
rrs 1472672 n.830delT non_coding_transcript_exon_variant 0.42
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.38
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 0.38
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.38
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.38
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.38
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.38
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.38
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.39
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.4
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.4
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.4
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.4
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.39
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.4
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.4
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.4
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.44
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.5
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.53
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.53
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.65
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.57
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.6
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.58
rrl 1473668 n.11C>T non_coding_transcript_exon_variant 0.14
rrl 1473697 n.40_41insA non_coding_transcript_exon_variant 0.35
rrl 1473700 n.44delA non_coding_transcript_exon_variant 0.35
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.43
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.43
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.26
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 0.43
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.5
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.55
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.58
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.56
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 0.52
rrl 1473814 n.157A>G non_coding_transcript_exon_variant 0.33
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.37
rrl 1473816 n.159C>T non_coding_transcript_exon_variant 0.22
rrl 1473829 n.172G>T non_coding_transcript_exon_variant 0.33
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.5
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.47
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.41
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.36
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.36
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.26
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.24
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.25
rrl 1473935 n.278C>T non_coding_transcript_exon_variant 0.15
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.15
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.14
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.15
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.14
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.23
rrl 1474293 n.636T>A non_coding_transcript_exon_variant 0.32
rrl 1474294 n.638_649delCTCTCCGGAGGA non_coding_transcript_exon_variant 0.35
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.33
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.33
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.43
rrl 1474376 n.719T>G non_coding_transcript_exon_variant 0.31
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.5
rrl 1474417 n.763_768delCGCGCA non_coding_transcript_exon_variant 0.25
rrl 1474425 n.768A>G non_coding_transcript_exon_variant 0.22
rrl 1474428 n.771C>A non_coding_transcript_exon_variant 0.22
rrl 1474430 n.773C>T non_coding_transcript_exon_variant 0.22
rrl 1474431 n.775_777delCGT non_coding_transcript_exon_variant 0.25
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 0.22
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.22
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.24
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.24
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.27
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.27
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.3
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.33
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.4
rrl 1474965 n.1308G>T non_coding_transcript_exon_variant 0.18
rrl 1475009 n.1352G>T non_coding_transcript_exon_variant 0.17
rrl 1475026 n.1369G>T non_coding_transcript_exon_variant 0.17
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 0.33
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 0.33
rrl 1475108 n.1451C>G non_coding_transcript_exon_variant 0.28
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 0.15
rrl 1475406 n.1749T>G non_coding_transcript_exon_variant 0.14
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.19
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.19
rrl 1475430 n.1773T>G non_coding_transcript_exon_variant 0.19
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.25
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.22
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.22
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.25
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.22
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.26
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.29
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.2
rrl 1475602 n.1945G>T non_coding_transcript_exon_variant 0.18
rrl 1475603 n.1946G>C non_coding_transcript_exon_variant 0.18
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.18
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.18
rrl 1475612 n.1955G>C non_coding_transcript_exon_variant 0.2
rrl 1475629 n.1972_1973insT non_coding_transcript_exon_variant 0.24
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 0.2
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.19
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 0.19
rrl 1475643 n.1986C>G non_coding_transcript_exon_variant 0.2
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.18
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.21
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.33
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.3
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.36
rrl 1475989 n.2332T>A non_coding_transcript_exon_variant 0.36
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.48
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.54
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.5
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.48
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 0.52
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.45
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.38
rrl 1476105 n.2448G>C non_coding_transcript_exon_variant 0.38
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 0.38
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.39
rrl 1476114 n.2457T>C non_coding_transcript_exon_variant 0.38
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.38
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.36
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.36
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.33
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.42
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.52
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.55
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.57
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.45
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.45
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.48
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.47
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.46
rrl 1476665 n.3008T>C non_coding_transcript_exon_variant 0.42
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.41
rrl 1476674 n.3017T>C non_coding_transcript_exon_variant 0.39
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.32
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.32
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.33
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.33
rrl 1476716 n.3059A>C non_coding_transcript_exon_variant 0.31
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.32
rrl 1476726 n.3069A>G non_coding_transcript_exon_variant 0.31
rrl 1476731 n.3074G>A non_coding_transcript_exon_variant 0.26
rrl 1476732 n.3075T>C non_coding_transcript_exon_variant 0.26
rrl 1476741 n.3084G>C non_coding_transcript_exon_variant 0.25
rrl 1476743 n.3086A>C non_coding_transcript_exon_variant 0.25
rrl 1476744 n.3087G>A non_coding_transcript_exon_variant 0.23
rrl 1476746 n.3089T>C non_coding_transcript_exon_variant 0.23
rrl 1476750 n.3093T>C non_coding_transcript_exon_variant 0.21
rrl 1476758 n.3101G>T non_coding_transcript_exon_variant 0.17
rrl 1476770 n.3113T>C non_coding_transcript_exon_variant 0.17
rrl 1476771 n.3114G>A non_coding_transcript_exon_variant 0.17
rpsA 1833787 c.246C>G synonymous_variant 0.17
rpsA 1833790 c.249T>C synonymous_variant 0.14
rpsA 1833829 c.288A>G synonymous_variant 0.16
rpsA 1833832 c.291G>A synonymous_variant 0.16
rpsA 1833838 c.297G>C synonymous_variant 0.16
rpsA 1833841 c.300C>G synonymous_variant 0.16
rpsA 1833856 c.315A>G synonymous_variant 0.16
rpsA 1833859 c.318C>G synonymous_variant 0.13
rpsA 1833874 c.333T>C synonymous_variant 0.18
rpsA 1833894 p.Ala118Glu missense_variant 0.18
rpsA 1833928 c.387G>C synonymous_variant 0.17
rpsA 1833949 c.408T>C synonymous_variant 0.17
rpsA 1833970 c.429G>C synonymous_variant 0.19
rpsA 1833979 c.438T>C synonymous_variant 0.14
rpsA 1834000 c.459G>C synonymous_variant 0.13
rpsA 1834177 c.636A>C synonymous_variant 0.96
rpsA 1834348 c.807T>C synonymous_variant 0.16
rpsA 1834361 c.820T>C synonymous_variant 0.15
rpsA 1834366 c.825A>G synonymous_variant 0.15
rpsA 1834396 c.855G>C synonymous_variant 0.22
rpsA 1834408 c.867C>T synonymous_variant 0.2
rpsA 1834411 c.870T>C synonymous_variant 0.2
rpsA 1834423 c.882G>T synonymous_variant 0.21
rpsA 1834432 c.891G>C synonymous_variant 0.24
rpsA 1834451 c.910T>C synonymous_variant 0.23
rpsA 1834468 c.927A>G synonymous_variant 0.28
rpsA 1834483 c.942G>A synonymous_variant 0.26
rpsA 1834489 c.948T>C synonymous_variant 0.23
rpsA 1834513 c.972C>G synonymous_variant 0.22
rpsA 1834520 p.Ala327Ser missense_variant 0.2
rpsA 1834528 c.987T>C synonymous_variant 0.23
rpsA 1834540 c.999G>C synonymous_variant 0.21
rpsA 1834543 c.1002C>G synonymous_variant 0.18
rpsA 1834546 c.1005T>C synonymous_variant 0.18
rpsA 1834554 c.1014_1015delTG frameshift_variant 0.18
rpsA 1834558 c.1017_1018insAG frameshift_variant 0.19
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2156475 c.-364A>G upstream_gene_variant 0.95
PPE35 2167926 p.Leu896Ser missense_variant 0.97
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 0.98
rpoA 3878197 p.Glu104Ala missense_variant 0.12
rpoA 3878205 c.303T>C synonymous_variant 0.13
rpoA 3878244 c.264G>A synonymous_variant 0.14
rpoA 3878256 c.252G>C synonymous_variant 0.12
clpC1 4038953 c.1752A>G synonymous_variant 0.14
clpC1 4038956 c.1749T>C synonymous_variant 0.13
clpC1 4039022 c.1683A>G synonymous_variant 0.14
clpC1 4039079 c.1626C>G synonymous_variant 0.13
clpC1 4039364 c.1341C>A synonymous_variant 0.17
clpC1 4039391 c.1314T>C synonymous_variant 0.14
clpC1 4039508 c.1197G>C synonymous_variant 0.14
clpC1 4039575 p.Ala377Gly missense_variant 0.12
clpC1 4039577 c.1128T>C synonymous_variant 0.14
clpC1 4039589 c.1116G>C synonymous_variant 0.14
clpC1 4039592 c.1113G>C synonymous_variant 0.15
clpC1 4039610 c.1095G>T synonymous_variant 0.16
clpC1 4039616 c.1089G>C synonymous_variant 0.17
clpC1 4039622 c.1083C>T synonymous_variant 0.18
clpC1 4039670 c.1035G>C synonymous_variant 0.11
clpC1 4039865 c.840T>C synonymous_variant 0.14
clpC1 4039898 c.807C>G synonymous_variant 0.16
clpC1 4039904 c.801A>G synonymous_variant 0.17
clpC1 4039907 c.798G>A synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.18
clpC1 4039934 c.771G>C synonymous_variant 0.18
clpC1 4039946 c.759A>T synonymous_variant 0.15
clpC1 4039952 c.753T>C synonymous_variant 0.14
clpC1 4039991 c.714G>C synonymous_variant 0.16
clpC1 4040021 c.684A>C synonymous_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 0.95
ethA 4327415 p.Ala20Val missense_variant 0.95
whiB6 4338242 p.Gln94* stop_gained 0.98
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 0.98
gid 4407927 p.Glu92Asp missense_variant 0.96