Run ID: ERR4799989
Sample name:
Date: 01-04-2023 09:31:10
Number of reads: 2246188
Percentage reads mapped: 74.11
Strain: lineage2.2.1.2
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.96 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.98 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.96 |
lineage2.2.1.2 | East-Asian (Beijing) | Beijing-RD142 | RD105;RD207;RD181;RD142 | 0.95 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7582 | p.Asp94Gly | missense_variant | 0.92 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.74 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 0.78 | streptomycin |
fabG1 | 1673432 | c.-8T>C | upstream_gene_variant | 0.93 | isoniazid, ethionamide |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288730 | p.Ala171Val | missense_variant | 0.95 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 0.98 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6571 | c.-731T>C | upstream_gene_variant | 0.13 |
gyrA | 6598 | c.-704C>G | upstream_gene_variant | 0.13 |
gyrA | 6610 | c.-692C>G | upstream_gene_variant | 0.14 |
gyrA | 6613 | c.-689A>G | upstream_gene_variant | 0.14 |
gyrA | 6616 | c.-686A>G | upstream_gene_variant | 0.14 |
gyrA | 6622 | c.-680C>T | upstream_gene_variant | 0.15 |
gyrA | 6631 | c.-671C>T | upstream_gene_variant | 0.16 |
gyrA | 6634 | c.-668T>C | upstream_gene_variant | 0.14 |
gyrA | 6637 | c.-665T>G | upstream_gene_variant | 0.15 |
gyrA | 6640 | c.-662A>C | upstream_gene_variant | 0.14 |
gyrA | 6643 | c.-659A>G | upstream_gene_variant | 0.14 |
gyrA | 6646 | c.-656C>T | upstream_gene_variant | 0.17 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 0.16 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.18 |
gyrA | 6676 | c.-626T>G | upstream_gene_variant | 0.18 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.2 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.19 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.19 |
gyrA | 6712 | c.-590G>C | upstream_gene_variant | 0.13 |
gyrA | 6724 | c.-578G>C | upstream_gene_variant | 0.12 |
gyrA | 6730 | c.-572A>G | upstream_gene_variant | 0.15 |
gyrA | 6742 | c.-560A>G | upstream_gene_variant | 0.16 |
gyrA | 6751 | c.-551G>C | upstream_gene_variant | 0.13 |
gyrA | 6775 | c.-527G>T | upstream_gene_variant | 0.16 |
gyrA | 7084 | c.-218A>G | upstream_gene_variant | 0.14 |
gyrA | 7100 | c.-202T>C | upstream_gene_variant | 0.12 |
gyrA | 7123 | c.-179C>G | upstream_gene_variant | 0.13 |
gyrA | 7126 | c.-176G>C | upstream_gene_variant | 0.12 |
gyrA | 7129 | c.-173T>C | upstream_gene_variant | 0.12 |
gyrA | 7132 | c.-170T>C | upstream_gene_variant | 0.13 |
gyrA | 7135 | c.-167G>C | upstream_gene_variant | 0.13 |
gyrA | 7136 | c.-166T>C | upstream_gene_variant | 0.14 |
gyrA | 7144 | c.-158A>G | upstream_gene_variant | 0.15 |
gyrA | 7150 | c.-152G>C | upstream_gene_variant | 0.17 |
gyrA | 7153 | c.-149G>C | upstream_gene_variant | 0.18 |
gyrA | 7177 | c.-125G>A | upstream_gene_variant | 0.17 |
gyrA | 7178 | c.-124T>C | upstream_gene_variant | 0.17 |
gyrA | 7186 | c.-116C>G | upstream_gene_variant | 0.17 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.13 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.13 |
gyrA | 8915 | c.1614A>G | synonymous_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.99 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.98 |
rpoB | 760418 | c.612G>C | synonymous_variant | 0.14 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.14 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.14 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.12 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.19 |
rpoB | 760965 | p.Met387Leu | missense_variant | 0.2 |
rpoB | 760973 | c.1167G>T | synonymous_variant | 0.27 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.25 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.25 |
rpoB | 760988 | c.1182C>G | synonymous_variant | 0.25 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.25 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.29 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.27 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.37 |
rpoB | 761027 | c.1221A>C | synonymous_variant | 0.47 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.35 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.35 |
rpoB | 761051 | c.1245G>T | synonymous_variant | 0.32 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.35 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.35 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.38 |
rpoB | 761063 | c.1257C>G | synonymous_variant | 0.38 |
rpoB | 761087 | c.1281C>G | synonymous_variant | 0.21 |
rpoB | 761088 | c.1282_1284delAGCinsTCG | synonymous_variant | 0.21 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.21 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.2 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.14 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.14 |
rpoB | 761147 | c.1341C>T | synonymous_variant | 0.22 |
rpoB | 761150 | c.1344A>T | synonymous_variant | 0.24 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.24 |
rpoB | 761171 | c.1365C>T | synonymous_variant | 0.22 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.19 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.19 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.24 |
rpoB | 761198 | c.1392G>C | synonymous_variant | 0.26 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.28 |
rpoB | 761217 | p.Pro471Ser | missense_variant | 0.26 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.27 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.26 |
rpoB | 761258 | c.1452G>A | synonymous_variant | 0.26 |
rpoB | 761261 | c.1455G>C | synonymous_variant | 0.26 |
rpoB | 761264 | c.1458C>G | synonymous_variant | 0.27 |
rpoB | 761318 | c.1512G>C | synonymous_variant | 0.16 |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.14 |
rpoB | 761330 | c.1524G>C | synonymous_variant | 0.14 |
rpoB | 761555 | c.1749G>C | synonymous_variant | 0.17 |
rpoB | 761558 | c.1752C>G | synonymous_variant | 0.19 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.2 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.19 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.19 |
rpoB | 761600 | c.1794T>C | synonymous_variant | 0.2 |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.18 |
rpoB | 761615 | c.1809A>G | synonymous_variant | 0.17 |
rpoB | 761627 | c.1821C>T | synonymous_variant | 0.16 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.15 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.15 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.15 |
rpoB | 761666 | c.1860G>C | synonymous_variant | 0.13 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.15 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.17 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.15 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.2 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.21 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.22 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 0.19 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.18 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.16 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.16 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 0.16 |
rpoC | 763142 | c.-228C>G | upstream_gene_variant | 0.17 |
rpoC | 763157 | c.-213G>T | upstream_gene_variant | 0.15 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.15 |
rpoC | 763172 | c.-198G>C | upstream_gene_variant | 0.13 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.14 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.14 |
rpoC | 763495 | c.126G>A | synonymous_variant | 0.15 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.14 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.15 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.14 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.13 |
rpoC | 764557 | c.1188C>T | synonymous_variant | 0.15 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.16 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.19 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.18 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.16 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.15 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.14 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.18 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.2 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 0.2 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.19 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.21 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.21 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.22 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.27 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.26 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.26 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.26 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.25 |
rpoC | 764817 | p.Val483Gly | missense_variant | 0.69 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.22 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.13 |
rpoC | 766291 | c.2922G>C | synonymous_variant | 0.13 |
rpoC | 766297 | c.2928G>C | synonymous_variant | 0.13 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.14 |
rpoC | 767134 | c.3765C>T | synonymous_variant | 0.19 |
rpoC | 767138 | c.3769C>T | synonymous_variant | 0.21 |
rpoC | 767149 | c.3780C>T | synonymous_variant | 0.17 |
rpoC | 767155 | c.3786C>G | synonymous_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.94 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 0.96 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781628 | c.69T>G | synonymous_variant | 0.13 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.17 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.19 |
rpsL | 781685 | c.126G>C | synonymous_variant | 0.19 |
rpsL | 781706 | c.147T>G | synonymous_variant | 0.19 |
rpsL | 781709 | c.150G>C | synonymous_variant | 0.18 |
rpsL | 781715 | c.156T>C | synonymous_variant | 0.18 |
rpsL | 781721 | c.162C>T | synonymous_variant | 0.17 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.16 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.15 |
rpsL | 781754 | c.195G>C | synonymous_variant | 0.14 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.15 |
rpsL | 781763 | c.204C>G | synonymous_variant | 0.15 |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.15 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.18 |
rplC | 800633 | c.-176T>C | upstream_gene_variant | 0.22 |
rplC | 800645 | c.-164C>G | upstream_gene_variant | 0.22 |
rplC | 800648 | c.-161A>T | upstream_gene_variant | 0.21 |
rplC | 800651 | c.-158G>C | upstream_gene_variant | 0.22 |
rplC | 800678 | c.-131C>T | upstream_gene_variant | 0.2 |
rplC | 800684 | c.-125G>A | upstream_gene_variant | 0.2 |
rplC | 800690 | c.-119C>T | upstream_gene_variant | 0.2 |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.19 |
rplC | 800702 | c.-107G>C | upstream_gene_variant | 0.19 |
rplC | 800703 | c.-106_-104delTTGinsCTT | upstream_gene_variant | 0.17 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.19 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.19 |
rplC | 800744 | c.-65G>C | upstream_gene_variant | 0.13 |
rplC | 800747 | c.-62C>G | upstream_gene_variant | 0.13 |
rplC | 800759 | c.-50C>T | upstream_gene_variant | 0.13 |
rplC | 800768 | c.-41C>G | upstream_gene_variant | 0.14 |
fbiC | 1303614 | c.684C>G | synonymous_variant | 0.13 |
fbiC | 1303617 | c.687C>G | synonymous_variant | 0.13 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 0.97 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471922 | n.78delT | non_coding_transcript_exon_variant | 0.41 |
rrs | 1471925 | n.80T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1471931 | n.87delA | non_coding_transcript_exon_variant | 0.4 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472019 | n.174G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472031 | n.186G>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472033 | n.188A>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472035 | n.190G>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472040 | n.195T>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472041 | n.196C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472042 | n.197T>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472286 | n.441C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472287 | n.442C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472289 | n.444T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472290 | n.445C>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472297 | n.453_465delGTCCGGGTTCTCT | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472315 | n.470T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472327 | n.482G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472328 | n.483G>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472672 | n.830delT | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472847 | n.1002G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472850 | n.1005T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472859 | n.1014G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.65 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1473668 | n.11C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473697 | n.40_41insA | non_coding_transcript_exon_variant | 0.35 |
rrl | 1473700 | n.44delA | non_coding_transcript_exon_variant | 0.35 |
rrl | 1473717 | n.60G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1473731 | n.74T>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1473743 | n.86C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473746 | n.89T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1473797 | n.140G>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1473812 | n.155G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1473814 | n.157A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473815 | n.158T>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1473816 | n.159C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1473829 | n.172G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473832 | n.175C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473922 | n.265A>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473935 | n.278C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473945 | n.288T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473946 | n.289A>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474293 | n.636T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474294 | n.638_649delCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474376 | n.719T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474417 | n.763_768delCGCGCA | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474425 | n.768A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474428 | n.771C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474430 | n.773C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474431 | n.775_777delCGT | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474437 | n.781_782delAA | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474447 | n.790G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474965 | n.1308G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475009 | n.1352G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475026 | n.1369G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475061 | n.1404C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475062 | n.1405A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475108 | n.1451C>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475398 | n.1741C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475406 | n.1749T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475430 | n.1773T>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475479 | n.1822C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475480 | n.1823A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475487 | n.1830C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475531 | n.1874C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475544 | n.1887A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475602 | n.1945G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475603 | n.1946G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475604 | n.1947A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475612 | n.1955G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475629 | n.1972_1973insT | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475637 | n.1980T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475638 | n.1981C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475639 | n.1982C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475643 | n.1986C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475647 | n.1990G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475989 | n.2332T>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476088 | n.2431A>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476099 | n.2442A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476105 | n.2448G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476106 | n.2449A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476114 | n.2457T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476583 | n.2926G>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476665 | n.3008T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476666 | n.3009C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476674 | n.3017T>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476716 | n.3059A>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476723 | n.3066T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476726 | n.3069A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476731 | n.3074G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476732 | n.3075T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476741 | n.3084G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476743 | n.3086A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476744 | n.3087G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476746 | n.3089T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476750 | n.3093T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476758 | n.3101G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476770 | n.3113T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476771 | n.3114G>A | non_coding_transcript_exon_variant | 0.17 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.17 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.14 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.16 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.16 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.16 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.16 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.16 |
rpsA | 1833859 | c.318C>G | synonymous_variant | 0.13 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.18 |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.18 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.17 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.17 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.19 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.14 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.13 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.96 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.16 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 0.15 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.15 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.22 |
rpsA | 1834408 | c.867C>T | synonymous_variant | 0.2 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.2 |
rpsA | 1834423 | c.882G>T | synonymous_variant | 0.21 |
rpsA | 1834432 | c.891G>C | synonymous_variant | 0.24 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.23 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.28 |
rpsA | 1834483 | c.942G>A | synonymous_variant | 0.26 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.23 |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.22 |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 0.2 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.23 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.21 |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 0.18 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.18 |
rpsA | 1834554 | c.1014_1015delTG | frameshift_variant | 0.18 |
rpsA | 1834558 | c.1017_1018insAG | frameshift_variant | 0.19 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2156475 | c.-364A>G | upstream_gene_variant | 0.95 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.97 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.98 |
rpoA | 3878197 | p.Glu104Ala | missense_variant | 0.12 |
rpoA | 3878205 | c.303T>C | synonymous_variant | 0.13 |
rpoA | 3878244 | c.264G>A | synonymous_variant | 0.14 |
rpoA | 3878256 | c.252G>C | synonymous_variant | 0.12 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.14 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.13 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.14 |
clpC1 | 4039079 | c.1626C>G | synonymous_variant | 0.13 |
clpC1 | 4039364 | c.1341C>A | synonymous_variant | 0.17 |
clpC1 | 4039391 | c.1314T>C | synonymous_variant | 0.14 |
clpC1 | 4039508 | c.1197G>C | synonymous_variant | 0.14 |
clpC1 | 4039575 | p.Ala377Gly | missense_variant | 0.12 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.14 |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.14 |
clpC1 | 4039592 | c.1113G>C | synonymous_variant | 0.15 |
clpC1 | 4039610 | c.1095G>T | synonymous_variant | 0.16 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.17 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.18 |
clpC1 | 4039670 | c.1035G>C | synonymous_variant | 0.11 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.14 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.16 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.17 |
clpC1 | 4039907 | c.798G>A | synonymous_variant | 0.17 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.18 |
clpC1 | 4039934 | c.771G>C | synonymous_variant | 0.18 |
clpC1 | 4039946 | c.759A>T | synonymous_variant | 0.15 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.14 |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 0.16 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.95 |
ethA | 4327415 | p.Ala20Val | missense_variant | 0.95 |
whiB6 | 4338242 | p.Gln94* | stop_gained | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.98 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.96 |