EBG00000313339 - n.2926G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
29 Sensitive
1 RR-TB
25 HR-TB
1 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 1 |
| La1.8.1 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.9 | 28 |
| La3;lineage4.9 | 8 |
| M.canetti;lineage1 | 1 |
| lineage2.2.1 | 3 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.7;lineage4.9 | 6 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage3.1.2.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.1.2.1 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| 2 | |
| lineage2.2.1.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2;lineage4 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 86 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR8692825 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR3283032 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | SRR8692887 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR26159035 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR8692905 | Sensitive | None | SRR8692893 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None |
|---|
