TB-Profiler result

Run: SRR1238558
Summary

Run ID: SRR1238558

Sample name:

Date: 2024-04-15T03:08:06.321461

Number of reads: 64753129

Percentage reads mapped: 52.2

Median coverage: 81.0

Strain: lineage4.9

Spoligotype:

Drug-resistance: Other

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Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
lineage4 Euro-American None 0.98
lineage4.9 Euro-American (H37Rv-like) None 0.94
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
streptomycin rrs n.888G>A Uncertain significance Mutation from literature
fluoroquinolones
moxifloxacin
ofloxacin
levofloxacin
ciprofloxacin
aminoglycosides
amikacin
capreomycin
kanamycin
cycloserine
ethionamide
clofazimine
para-aminosalicylic_acid
delamanid
bedaquiline
linezolid
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.39 streptomycin Uncertain significance Mutation from literature
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
gyrA 7652 c.351C>T synonymous_variant 0.83 levofloxacin
moxifloxacin
gyrA 7658 c.357A>G synonymous_variant 0.82 levofloxacin
moxifloxacin
rpoB 760206 p.Ile134Val missense_variant 0.8 rifampicin
rpoB 760220 c.414C>A synonymous_variant 0.86 rifampicin
rpoB 760235 c.429T>C synonymous_variant 0.93 rifampicin Not assoc w R - Interim
rpoB 760244 c.438G>C synonymous_variant 0.85 rifampicin Not assoc w R - Interim
rpoB 760256 c.450C>T synonymous_variant 0.92 rifampicin Not assoc w R - Interim
rpoB 760262 c.456G>C synonymous_variant 0.97 rifampicin
rpoB 760263 p.Met153Val missense_variant 0.97 rifampicin Uncertain significance
rpoB 760274 p.Glu156Asp missense_variant 0.98 rifampicin Uncertain significance
rpoB 760277 c.471G>A synonymous_variant 0.94 rifampicin Not assoc w R - Interim
rpoB 760298 c.492G>A synonymous_variant 1.0 rifampicin
rpoB 760304 c.498G>A synonymous_variant 0.96 rifampicin
rpoB 760946 c.1140A>G synonymous_variant 0.91 rifampicin Not assoc w R - Interim
rpoB 760967 p.Met387Ile missense_variant 0.86 rifampicin
rpoB 760970 c.1164G>C synonymous_variant 0.94 rifampicin Not assoc w R - Interim
rpoB 760971 c.1165C>A synonymous_variant 0.94 rifampicin
rpoB 760982 c.1176G>T synonymous_variant 0.98 rifampicin
rpoB 760985 c.1179G>T synonymous_variant 0.93 rifampicin
rpoB 760988 c.1182C>T synonymous_variant 0.94 rifampicin
rpoB 761003 c.1197C>G synonymous_variant 0.96 rifampicin
rpoB 761015 c.1209G>C synonymous_variant 0.99 rifampicin Not assoc w R - Interim
rpoB 761036 c.1230G>C synonymous_variant 0.99 rifampicin Not assoc w R - Interim
rpoB 761037 c.1231T>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim
rpoB 761051 c.1245G>T synonymous_variant 1.0 rifampicin Not assoc w R - Interim
rpoB 761057 c.1251G>C synonymous_variant 1.0 rifampicin Not assoc w R - Interim
rpoB 761063 c.1257C>T synonymous_variant 0.95 rifampicin
rpoB 761075 c.1269G>A synonymous_variant 0.93 rifampicin
rpoC 763528 c.159G>T synonymous_variant 0.91 rifampicin
rpoC 763534 c.165T>C synonymous_variant 0.71 rifampicin
rpoC 763537 c.168C>G synonymous_variant 0.65 rifampicin
rpoC 763546 c.177A>G synonymous_variant 0.62 rifampicin Not assoc w R - Interim
rpoC 763558 c.189C>T synonymous_variant 0.55 rifampicin Not assoc w R - Interim
rpoC 763570 c.201G>T synonymous_variant 0.67 rifampicin
rpoC 763573 c.204G>C synonymous_variant 0.76 rifampicin Not assoc w R - Interim
rpoC 763594 c.225C>T synonymous_variant 0.8 rifampicin Not assoc w R - Interim
rpoC 763666 c.297G>T synonymous_variant 1.0 rifampicin
rpoC 763669 c.300C>G synonymous_variant 0.75 rifampicin Not assoc w R - Interim
rpoC 763672 c.303C>A synonymous_variant 0.64 rifampicin
rpoC 763678 c.309C>T synonymous_variant 0.63 rifampicin Not assoc w R - Interim
rpoC 763699 c.330G>C synonymous_variant 0.67 rifampicin
rpoC 763702 c.333C>T synonymous_variant 0.79 rifampicin Not assoc w R - Interim
rpoC 763705 c.336G>C synonymous_variant 0.76 rifampicin
rpoC 763708 c.339G>T synonymous_variant 0.76 rifampicin
rpoC 763714 c.345G>A synonymous_variant 0.68 rifampicin
rpoC 763723 c.354G>C synonymous_variant 0.6 rifampicin
rpoC 763726 c.357C>T synonymous_variant 0.58 rifampicin
rpoC 763732 c.363C>G synonymous_variant 0.44 rifampicin
rpoC 764575 c.1206T>G synonymous_variant 0.69 rifampicin Not assoc w R - Interim
rpoC 764581 c.1212T>C synonymous_variant 0.71 rifampicin
rpoC 764677 c.1308C>G synonymous_variant 0.9 rifampicin Not assoc w R - Interim
rpoC 764680 c.1311G>A synonymous_variant 0.7 rifampicin
rpoC 764706 p.Leu446Gln missense_variant 0.85 rifampicin Uncertain significance
rpoC 764746 c.1377G>T synonymous_variant 0.82 rifampicin Not assoc w R - Interim
rpoC 764953 c.1584G>C synonymous_variant 0.88 rifampicin
rpoC 764956 c.1587T>C synonymous_variant 0.88 rifampicin
rpoC 764962 c.1593G>T synonymous_variant 0.93 rifampicin
rpoC 764968 c.1599T>C synonymous_variant 0.93 rifampicin Not assoc w R - Interim
rpoC 766837 c.3468G>C synonymous_variant 0.91 rifampicin Not assoc w R - Interim
rrs 1472063 n.218C>T non_coding_transcript_exon_variant 0.87 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472072 n.227A>G non_coding_transcript_exon_variant 0.93 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.97 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.91 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.68 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.69 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.3 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.27 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.34 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.43 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.39 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.44 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.18 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.93 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.23 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.4 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.39 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.44 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.5 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Uncertain significance
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.5 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.42 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.32 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.38 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.99 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.27 streptomycin Uncertain significance
kanamycin
capreomycin
amikacin
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.23 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.89 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.91 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472312 n.467_468insA non_coding_transcript_exon_variant 0.85 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.88 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472329 n.484A>G non_coding_transcript_exon_variant 0.94 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472338 n.493A>T non_coding_transcript_exon_variant 0.92 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.98 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 0.97 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.88 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.92 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.9 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Uncertain significance
rrs 1472544 n.699C>T non_coding_transcript_exon_variant 0.32 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472553 n.708C>T non_coding_transcript_exon_variant 0.28 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.5 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.55 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.2 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.39 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.41 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.59 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.32 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472583 n.738T>A non_coding_transcript_exon_variant 0.66 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.37 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.4 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472599 n.754G>A non_coding_transcript_exon_variant 0.58 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472600 n.755C>T non_coding_transcript_exon_variant 0.18 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472603 n.758A>G non_coding_transcript_exon_variant 0.33 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.35 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.68 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.41 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.68 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.23 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472669 n.824_825insCG non_coding_transcript_exon_variant 0.62 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.42 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472700 n.855C>T non_coding_transcript_exon_variant 0.38 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472705 n.860G>A non_coding_transcript_exon_variant 0.53 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.3 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.23 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472715 n.870C>T non_coding_transcript_exon_variant 0.15 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.68 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472726 n.881G>A non_coding_transcript_exon_variant 0.41 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.56 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.57 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.57 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.21 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.28 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472778 n.933C>T non_coding_transcript_exon_variant 0.39 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472779 n.934G>A non_coding_transcript_exon_variant 0.75 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.75 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.5 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.97 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.97 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472869 n.1024G>T non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472870 n.1025T>G non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 1.0 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.91 streptomycin
kanamycin
capreomycin
amikacin
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.98 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.91 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.9 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.88 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.89 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.88 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.99 streptomycin Uncertain significance
kanamycin Not assoc w R
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.89 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.92 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473094 n.1249T>G non_coding_transcript_exon_variant 0.93 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.93 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.93 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.94 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 0.94 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473122 n.1277T>G non_coding_transcript_exon_variant 0.94 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473123 n.1278A>G non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.95 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.97 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.15 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473204 n.1359C>T non_coding_transcript_exon_variant 0.87 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473215 n.1370A>G non_coding_transcript_exon_variant 0.82 streptomycin Uncertain significance
kanamycin
capreomycin
amikacin
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.13 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.87 streptomycin Uncertain significance
kanamycin Not assoc w R
capreomycin Not assoc w R
amikacin Not assoc w R
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.95 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.94 streptomycin
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473288 n.1444delT non_coding_transcript_exon_variant 1.0 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.99 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.99 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.96 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.97 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Uncertain significance
rrs 1473351 n.1506A>G non_coding_transcript_exon_variant 0.17 streptomycin
kanamycin
capreomycin
amikacin
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.3 streptomycin Uncertain significance
kanamycin Uncertain significance
capreomycin Uncertain significance
amikacin Not assoc w R
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.7 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.58 capreomycin
linezolid
rrl 1473888 n.231T>G non_coding_transcript_exon_variant 0.59 capreomycin
linezolid
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.61 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.6 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473908 n.251C>T non_coding_transcript_exon_variant 0.55 capreomycin
linezolid
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.65 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473922 n.265A>G non_coding_transcript_exon_variant 0.81 capreomycin
linezolid
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.84 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474158 n.501A>C non_coding_transcript_exon_variant 0.87 capreomycin
linezolid
rrl 1474179 n.523dupT non_coding_transcript_exon_variant 0.98 capreomycin
linezolid
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1474185 n.529delA non_coding_transcript_exon_variant 0.94 capreomycin
linezolid
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid
rrl 1474202 n.545T>G non_coding_transcript_exon_variant 0.98 capreomycin
linezolid
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.23 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474220 n.563G>A non_coding_transcript_exon_variant 0.75 capreomycin
linezolid
rrl 1474228 n.571T>A non_coding_transcript_exon_variant 0.2 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.19 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.18 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474263 n.606G>T non_coding_transcript_exon_variant 0.16 capreomycin
linezolid
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.74 capreomycin
linezolid
rrl 1474265 n.608G>A non_coding_transcript_exon_variant 0.93 capreomycin
linezolid
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 0.75 capreomycin
linezolid
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.95 capreomycin
linezolid
rrl 1474284 n.631_633delCCT non_coding_transcript_exon_variant 0.97 capreomycin
linezolid
rrl 1474293 n.637_651delCCTCTCCGGAGGAGG non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1474310 n.655dupG non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.99 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474353 n.696A>C non_coding_transcript_exon_variant 0.99 capreomycin
linezolid
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1474355 n.698A>G non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.98 capreomycin Uncertain significance
linezolid
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474374 n.717T>A non_coding_transcript_exon_variant 0.99 capreomycin
linezolid
rrl 1474387 n.730C>G non_coding_transcript_exon_variant 0.99 capreomycin
linezolid
rrl 1474413 n.756A>T non_coding_transcript_exon_variant 0.84 capreomycin
linezolid
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1474494 n.837C>T non_coding_transcript_exon_variant 0.89 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.89 capreomycin
linezolid
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.92 capreomycin
linezolid
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.9 capreomycin
linezolid
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.9 capreomycin
linezolid
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.97 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.89 capreomycin
linezolid
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.9 capreomycin
linezolid
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.93 capreomycin
linezolid
rrl 1474614 n.957T>G non_coding_transcript_exon_variant 0.39 capreomycin
linezolid
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.56 capreomycin Uncertain significance
linezolid
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.83 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474777 n.1120T>A non_coding_transcript_exon_variant 0.87 capreomycin
linezolid
rrl 1474793 n.1136C>T non_coding_transcript_exon_variant 0.78 capreomycin
linezolid
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.9 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474798 n.1141C>T non_coding_transcript_exon_variant 0.79 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474806 n.1149A>G non_coding_transcript_exon_variant 0.73 capreomycin
linezolid
rrl 1474812 n.1155G>T non_coding_transcript_exon_variant 0.93 capreomycin
linezolid
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.96 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.77 capreomycin
linezolid
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.21 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.97 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1474927 n.1271delC non_coding_transcript_exon_variant 0.96 capreomycin
linezolid
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475115 n.1458A>G non_coding_transcript_exon_variant 0.98 capreomycin
linezolid
rrl 1475116 n.1459G>T non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 0.99 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475196 n.1539T>C non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1475457 n.1800G>A non_coding_transcript_exon_variant 0.75 capreomycin
linezolid
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475486 n.1829A>G non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.88 capreomycin Uncertain significance
linezolid
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.79 capreomycin
linezolid
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.83 capreomycin Uncertain significance
linezolid
rrl 1475699 n.2042C>G non_coding_transcript_exon_variant 0.84 capreomycin
linezolid
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.83 capreomycin Uncertain significance
linezolid
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.83 capreomycin
linezolid
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.81 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475745 n.2088A>C non_coding_transcript_exon_variant 0.82 capreomycin
linezolid
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.82 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475767 n.2110_2111insATTCGTTCT non_coding_transcript_exon_variant 0.22 capreomycin
linezolid
rrl 1475777 n.2120A>G non_coding_transcript_exon_variant 0.65 capreomycin
linezolid Uncertain significance
rrl 1475778 n.2121G>A non_coding_transcript_exon_variant 0.6 capreomycin
linezolid
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.19 capreomycin Uncertain significance
linezolid
rrl 1475782 n.2125T>C non_coding_transcript_exon_variant 0.54 capreomycin
linezolid
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.51 capreomycin Uncertain significance
linezolid
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.32 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.32 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.39 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.39 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.19 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475871 n.2214T>C non_coding_transcript_exon_variant 0.84 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475880 n.2223C>T non_coding_transcript_exon_variant 0.91 capreomycin
linezolid
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.94 capreomycin
linezolid
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.96 capreomycin Uncertain significance
linezolid
rrl 1475895 n.2238C>T non_coding_transcript_exon_variant 0.91 capreomycin
linezolid
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.94 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.92 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1475990 n.2333G>T non_coding_transcript_exon_variant 0.85 capreomycin
linezolid
rrl 1475992 n.2335T>C non_coding_transcript_exon_variant 0.85 capreomycin
linezolid
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.87 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476026 n.2369T>G non_coding_transcript_exon_variant 0.94 capreomycin
linezolid
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.85 capreomycin
linezolid
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.83 capreomycin Uncertain significance
linezolid
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.8 capreomycin Uncertain significance
linezolid
rrl 1476046 n.2389G>A non_coding_transcript_exon_variant 0.6 capreomycin
linezolid
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.7 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.7 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.7 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.35 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.64 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.92 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476201 n.2544C>G non_coding_transcript_exon_variant 0.91 capreomycin
linezolid
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.88 capreomycin
linezolid
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.81 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.86 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.83 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.38 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.75 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1476301 n.2644A>G non_coding_transcript_exon_variant 1.0 capreomycin
linezolid
rrl 1476306 n.2649A>T non_coding_transcript_exon_variant 0.84 capreomycin
linezolid
rrl 1476319 n.2662C>T non_coding_transcript_exon_variant 0.19 capreomycin
linezolid
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.78 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.45 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.91 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.92 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.93 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.94 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476411 n.2754G>T non_coding_transcript_exon_variant 0.51 capreomycin
linezolid
rrl 1476420 n.2763G>A non_coding_transcript_exon_variant 0.28 capreomycin
linezolid
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.36 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.33 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476433 n.2776C>T non_coding_transcript_exon_variant 0.3 capreomycin
linezolid
rrl 1476463 n.2806C>A non_coding_transcript_exon_variant 0.46 capreomycin
linezolid
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.85 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.98 capreomycin Not assoc w R
linezolid Uncertain significance
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.37 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.18 capreomycin Uncertain significance
linezolid
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.51 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.56 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.98 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.96 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.53 capreomycin Uncertain significance
linezolid
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.42 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.23 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.22 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.36 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476539 n.2882A>C non_coding_transcript_exon_variant 0.64 capreomycin
linezolid
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.24 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476545 n.2888C>T non_coding_transcript_exon_variant 0.6 capreomycin
linezolid
rrl 1476546 n.2889C>T non_coding_transcript_exon_variant 0.6 capreomycin
linezolid
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.22 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476564 n.2907G>A non_coding_transcript_exon_variant 0.69 capreomycin
linezolid
rrl 1476565 n.2908G>A non_coding_transcript_exon_variant 0.68 capreomycin
linezolid
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.8 capreomycin
linezolid
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.95 capreomycin Uncertain significance
linezolid
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0 capreomycin Uncertain significance
linezolid Uncertain significance
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.96 capreomycin Uncertain significance
linezolid Uncertain significance
rpsA 1833856 c.315A>G synonymous_variant 0.73 pyrazinamide
rpsA 1833859 c.318C>T synonymous_variant 0.73 pyrazinamide
rpsA 1833862 c.321G>C synonymous_variant 0.8 pyrazinamide
rpsA 1833871 c.330G>A synonymous_variant 0.9 pyrazinamide
rpsA 1833874 c.333T>C synonymous_variant 1.0 pyrazinamide
rpsA 1833877 c.336C>T synonymous_variant 1.0 pyrazinamide
rpsA 1833894 p.Ala118Glu missense_variant 1.0 pyrazinamide
rpsA 1833914 c.373_375delGCCinsCG frameshift_variant&missense_variant 0.98 pyrazinamide Uncertain significance
rpsA 1833921 p.Lys127Ser missense_variant 0.98 pyrazinamide
rpsA 1833925 c.384C>G synonymous_variant 0.94 pyrazinamide
rpsA 1833926 p.Thr129Ala missense_variant 0.94 pyrazinamide
rpsA 1833946 c.405G>A synonymous_variant 0.93 pyrazinamide
rpsA 1833949 c.408T>C synonymous_variant 0.97 pyrazinamide
rpsA 1833952 c.411C>A synonymous_variant 0.9 pyrazinamide
rpsA 1833955 c.414G>C synonymous_variant 0.97 pyrazinamide
rpsA 1833958 c.417C>T synonymous_variant 0.97 pyrazinamide
rpsA 1833970 c.429G>C synonymous_variant 0.9 pyrazinamide
rpsA 1833976 c.435C>T synonymous_variant 0.71 pyrazinamide
rpsA 1834411 c.870T>C synonymous_variant 1.0 pyrazinamide
rpsA 1834423 c.882G>A synonymous_variant 1.0 pyrazinamide
rpsA 1834450 c.909G>A synonymous_variant 1.0 pyrazinamide
rpsA 1834451 c.910_912delTTGinsCC frameshift_variant&missense_variant 1.0 pyrazinamide Uncertain significance
rpsA 1834456 c.915T>G synonymous_variant 0.99 pyrazinamide
rpsA 1834468 c.927A>G synonymous_variant 0.99 pyrazinamide
rpsA 1834486 c.945G>A synonymous_variant 0.94 pyrazinamide
rpsA 1834498 c.957C>A synonymous_variant 0.92 pyrazinamide
rpsA 1834516 c.975G>A synonymous_variant 0.97 pyrazinamide
ald 3086788 c.-32T>C upstream_gene_variant 0.94 cycloserine
rpoA 3878244 c.264G>A synonymous_variant 0.9 rifampicin
clpC1 4038721 c.1984C>T synonymous_variant 0.92 pyrazinamide
clpC1 4038725 c.1980C>A synonymous_variant 0.97 pyrazinamide
clpC1 4038740 c.1965G>C synonymous_variant 0.99 pyrazinamide
clpC1 4038746 c.1959C>T synonymous_variant 0.99 pyrazinamide Not assoc w R - Interim
clpC1 4038749 c.1956C>T synonymous_variant 0.98 pyrazinamide Not assoc w R - Interim
clpC1 4038755 c.1950G>T synonymous_variant 0.98 pyrazinamide
clpC1 4038758 c.1947C>T synonymous_variant 0.98 pyrazinamide
clpC1 4038773 c.1932T>C synonymous_variant 0.97 pyrazinamide
clpC1 4038779 c.1926C>G synonymous_variant 0.95 pyrazinamide
clpC1 4038790 c.1915C>T synonymous_variant 0.95 pyrazinamide Not assoc w R - Interim
clpC1 4038794 p.Ser637Thr missense_variant 0.94 pyrazinamide
clpC1 4038815 c.1890G>A synonymous_variant 0.93 pyrazinamide
clpC1 4038836 c.1869G>T synonymous_variant 0.82 pyrazinamide
clpC1 4038845 c.1860G>C synonymous_variant 0.9 pyrazinamide
clpC1 4038857 c.1848C>T synonymous_variant 0.86 pyrazinamide
clpC1 4038860 c.1845G>C synonymous_variant 0.95 pyrazinamide Not assoc w R - Interim
clpC1 4038872 c.1833C>G synonymous_variant 0.95 pyrazinamide
clpC1 4038878 c.1827A>G synonymous_variant 0.98 pyrazinamide Not assoc w R - Interim
clpC1 4038890 c.1815G>A synonymous_variant 0.95 pyrazinamide
clpC1 4038896 c.1809C>A synonymous_variant 0.95 pyrazinamide
clpC1 4038902 c.1803C>T synonymous_variant 0.89 pyrazinamide
clpC1 4038986 p.Asp573Glu missense_variant 0.97 pyrazinamide
clpC1 4038997 c.1708T>C synonymous_variant 0.98 pyrazinamide Not assoc w R - Interim
clpC1 4039004 c.1701C>G synonymous_variant 0.98 pyrazinamide
clpC1 4039009 c.1696C>T synonymous_variant 0.98 pyrazinamide
clpC1 4039010 c.1695G>C synonymous_variant 0.98 pyrazinamide
clpC1 4039022 c.1683A>G synonymous_variant 0.99 pyrazinamide
clpC1 4039031 c.1674T>A synonymous_variant 0.93 pyrazinamide
clpC1 4039046 c.1659C>T synonymous_variant 0.99 pyrazinamide Not assoc w R - Interim
clpC1 4039067 c.1638G>C synonymous_variant 0.99 pyrazinamide
clpC1 4039073 c.1632C>G synonymous_variant 1.0 pyrazinamide
clpC1 4039079 c.1626C>G synonymous_variant 1.0 pyrazinamide Not assoc w R - Interim
clpC1 4039082 c.1623C>T synonymous_variant 1.0 pyrazinamide
clpC1 4039091 c.1614_1615insT frameshift_variant 0.44 pyrazinamide
clpC1 4039091 c.1614_1615insT frameshift_variant 0.44 pyrazinamide
clpC1 4039172 c.1533A>G synonymous_variant 0.88 pyrazinamide
clpC1 4039181 c.1522_1524delTTGinsCC frameshift_variant&missense_variant 0.88 pyrazinamide
clpC1 4039187 c.1518G>T synonymous_variant 0.88 pyrazinamide
clpC1 4039199 p.Ala502Glu missense_variant 1.0 pyrazinamide
clpC1 4039454 c.1251A>T synonymous_variant 0.91 pyrazinamide
clpC1 4039463 c.1242C>G synonymous_variant 0.91 pyrazinamide
clpC1 4039469 c.1236T>C synonymous_variant 0.91 pyrazinamide
clpC1 4039472 c.1233G>T synonymous_variant 0.92 pyrazinamide
clpC1 4039481 c.1222_1224delGCTinsTG frameshift_variant&missense_variant 0.93 pyrazinamide
clpC1 4039484 c.1221T>G synonymous_variant 0.72 pyrazinamide
clpC1 4039487 c.1218G>C synonymous_variant 0.95 pyrazinamide
clpC1 4039517 c.1188C>G synonymous_variant 0.95 pyrazinamide
clpC1 4039524 p.Phe394Tyr missense_variant 1.0 pyrazinamide
clpC1 4039526 c.1179G>A synonymous_variant 0.82 pyrazinamide
clpC1 4039529 c.1176C>T synonymous_variant 0.82 pyrazinamide
clpC1 4039541 c.1164C>G synonymous_variant 0.82 pyrazinamide
clpC1 4039850 c.855T>C synonymous_variant 0.54 pyrazinamide
clpC1 4039898 c.807C>G synonymous_variant 0.75 pyrazinamide
clpC1 4039901 c.804C>G synonymous_variant 0.3 pyrazinamide
clpC1 4039904 c.801A>G synonymous_variant 0.39 pyrazinamide
clpC1 4039922 c.783C>T synonymous_variant 0.35 pyrazinamide
clpC1 4039931 c.774T>C synonymous_variant 0.64 pyrazinamide
clpC1 4039952 c.753T>C synonymous_variant 0.64 pyrazinamide
clpC1 4040321 c.384C>T synonymous_variant 0.87 pyrazinamide
clpC1 4040327 c.378G>A synonymous_variant 0.89 pyrazinamide Not assoc w R - Interim
clpC1 4040336 c.369G>C synonymous_variant 0.91 pyrazinamide
clpC1 4040348 c.357G>T synonymous_variant 0.91 pyrazinamide
clpC1 4040351 c.354C>T synonymous_variant 0.91 pyrazinamide
clpC1 4040363 c.342A>T synonymous_variant 0.89 pyrazinamide
clpC1 4040366 c.339C>T synonymous_variant 0.91 pyrazinamide
clpC1 4040369 c.336C>G synonymous_variant 0.93 pyrazinamide
clpC1 4040375 c.330G>C synonymous_variant 0.93 pyrazinamide
clpC1 4040380 c.325T>C synonymous_variant 0.95 pyrazinamide
clpC1 4040387 c.318A>G synonymous_variant 0.95 pyrazinamide
clpC1 4040393 c.312G>C synonymous_variant 0.95 pyrazinamide Not assoc w R - Interim
clpC1 4040423 c.282A>G synonymous_variant 0.92 pyrazinamide Not assoc w R - Interim
clpC1 4040546 c.159G>T synonymous_variant 0.76 pyrazinamide
clpC1 4040551 c.154T>C synonymous_variant 0.9 pyrazinamide Not assoc w R - Interim
clpC1 4040561 c.142_144delTCAinsGG frameshift_variant&missense_variant 0.91 pyrazinamide
clpC1 4040576 c.129C>T synonymous_variant 0.95 pyrazinamide
clpC1 4040582 c.123G>T synonymous_variant 0.95 pyrazinamide
clpC1 4040585 c.120A>G synonymous_variant 0.97 pyrazinamide
clpC1 4040596 c.109C>T synonymous_variant 0.98 pyrazinamide
clpC1 4040600 c.103_105delTTAinsCG frameshift_variant&missense_variant 0.98 pyrazinamide
clpC1 4040606 c.99T>C synonymous_variant 0.98 pyrazinamide
clpC1 4040642 c.63G>A synonymous_variant 0.99 pyrazinamide
clpC1 4040648 c.57G>A synonymous_variant 0.99 pyrazinamide
clpC1 4040666 c.39C>T synonymous_variant 1.0 pyrazinamide
whiB6 4338732 c.-211C>T upstream_gene_variant 1.0 capreomycin
amikacin
kanamycin