EBG00000313325 - n.417C>T
Drug resistance types
3 Sensitive
2 RR-TB
9 HR-TB
6 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
183 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.7 | 2 |
| lineage4.2.1.1 | 3 |
| lineage4.9 | 153 |
| lineage1.2.1.2.1;lineage4.9 | 1 |
| lineage4.8 | 3 |
| La1.8.2 | 4 |
| lineage4.4.1.1 | 2 |
| La1.2 | 5 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage3 | 3 |
| lineage1.2.1.2.1 | 2 |
| lineage2.2.1 | 4 |
| lineage4.5 | 2 |
| M.canetti;lineage2.1 | 1 |
| lineage4.2.1 | 3 |
| La1.8.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6152979 | Other | lineage4.7 | None | SRR6397638 | Other | lineage4.2.1.1 | None | SRR13861714 | Other | lineage4.9 | None | SRR6153036 | Other | lineage1.2.1.2.1;lineage4.9 | None | SRR6397721 | Other | lineage4.2.1.1 | None | SRR13861369 | Other | lineage4.9 | None | SRR13861217 | Other | lineage4.9 | None | ERR2229033 | Other | lineage4.8 | None | SRR13861626 | Other | lineage4.9 | None | SRR13861459 | HR-TB | lineage4.9 | None | SRR13861187 | Other | lineage4.9 | None | SRR13861720 | Other | lineage4.9 | None | SRR13861307 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861531 | Other | lineage4.9 | None | SRR13861597 | Other | lineage4.9 | None | ERR6149870 | Other | La1.8.2 | None | SRR6153042 | Other | lineage4.4.1.1 | None | SRR13861648 | Other | lineage4.9 | None | SRR13861447 | Other | lineage4.9 | None | SRR13861438 | Other | lineage4.9 | None | SRR13861231 | Other | lineage4.9 | None | SRR13861593 | Other | lineage4.9 | None | ERR6198389 | Other | La1.2 | None | SRR6397551 | Other | lineage4.1.1.3 | None | SRR13861514 | Other | lineage4.9 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861294 | Other | lineage4.9 | None | SRR1196582 | Other | lineage4.9 | None | SRR13861142 | Other | lineage4.9 | None | ERR1465744 | Sensitive | lineage4.1.2.1 | None | SRR13861188 | Other | lineage4.9 | None | SRR13861264 | HR-TB | lineage4.9 | None | SRR13861345 | Other | lineage4.9 | None | SRR13861468 | Other | lineage4.9 | None | SRR13861519 | Other | lineage4.9 | None | SRR13861522 | Other | lineage4.9 | None | SRR13861487 | Other | lineage4.9 | None | SRR13861450 | Other | lineage4.9 | None | ERR4423724 | RR-TB | lineage3 | None | SRR13861534 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | SRR13861331 | Other | lineage4.9 | None | SRR13861598 | Other | lineage4.9 | None | SRR13861692 | Other | lineage4.9 | None | SRR6397396 | HR-TB | lineage1.2.1.2.1 | None | SRR6397770 | Other | lineage4.7 | None | SRR13861254 | Other | lineage4.9 | None | ERR6149874 | Other | La1.8.2 | None | SRR13861446 | Other | lineage4.9 | None | SRR13861634 | Other | lineage4.9 | None | ERR2229358 | Other | lineage4.8 | None | SRR7645834 | Other | lineage2.2.1 | None | SRR13861491 | Other | lineage4.9 | None | SRR13861559 | Other | lineage4.9 | None | SRR13861219 | Other | lineage4.9 | None | SRR13861706 | Other | lineage4.9 | None | SRR1183080 | Other | lineage4.9 | None | SRR13861278 | Other | lineage4.9 | None | SRR13861630 | Other | lineage4.9 | None | SRR13861403 | Other | lineage4.9 | None | SRR13861419 | Other | lineage4.9 | None | SRR13861499 | Other | lineage4.9 | None | SRR6152886 | HR-TB | lineage3 | None | SRR13861244 | Other | lineage4.9 | None | SRR13861246 | Other | lineage4.9 | None | SRR13861461 | Other | lineage4.9 | None | SRR13861639 | Other | lineage4.9 | None | SRR6397441 | Other | lineage4.5 | None | SRR13861696 | Other | lineage4.9 | None | SRR1184383 | Other | lineage4.9 | None | SRR13861493 | Other | lineage4.9 | None | SRR13861702 | Other | lineage4.9 | None | SRR13861318 | Other | lineage4.9 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR1238557 | Other | lineage4.9 | None | SRR13861410 | Other | lineage4.9 | None | SRR13861589 | Other | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861627 | Other | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861200 | Other | lineage4.9 | None | SRR10315603 | MDR-TB | lineage4.8 | None | SRR13861201 | Other | lineage4.9 | None | SRR13861213 | Other | lineage4.9 | None | SRR13861431 | Other | lineage4.9 | None | SRR13861555 | Other | lineage4.9 | None | SRR13861641 | Other | lineage4.9 | None | SRR13861624 | Other | lineage4.9 | None | SRR13861258 | Other | lineage4.9 | None | SRR13861274 | Other | lineage4.9 | None | SRR13861608 | Other | lineage4.9 | None | SRR6152854 | Other | lineage4.1.2.1 | None | SRR13861637 | Other | lineage4.9 | None | SRR1183100 | MDR-TB | lineage4.2.1 | None | SRR13861141 | Other | lineage4.9 | None | SRR13861256 | Other | lineage4.9 | None | SRR13861440 | Other | lineage4.9 | None | SRR13861156 | Other | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861482 | Other | lineage4.9 | None | SRR13861312 | Other | lineage4.9 | None | SRR13861562 | Other | lineage4.9 | None | SRR13861572 | Other | lineage4.9 | None | ERR6201832 | Other | La1.2 | None | SRR13861651 | Other | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR13861328 | Other | lineage4.9 | None | ERR192071 | Other | La1.8.1 | None | SRR13861263 | Other | lineage4.9 | None | SRR13861175 | Other | lineage4.9 | None | ERR6201802 | Other | La1.2 | None | ERR6201814 | Other | La1.2 | None | SRR11349188 | MDR-TB | lineage4.1.2.1 | None | SRR13861497 | HR-TB | lineage4.9 | None | SRR13861532 | Other | lineage4.9 | None | ERR4769429 | Other | lineage4.9 | None | SRR13861144 | Other | lineage4.9 | None | SRR13861418 | Other | lineage4.9 | None | SRR13861243 | Other | lineage4.9 | None | SRR13861654 | Other | lineage4.9 | None | SRR13861567 | Other | lineage4.9 | None | SAMN02628479 | MDR-TB | lineage4.2.1 | ir | SRR13861533 | Other | lineage4.9 | None | SRR13861600 | Other | lineage4.9 | None | SRR13861617 | Other | lineage4.9 | None | SRR13861416 | Other | lineage4.9 | None | ERR1023527 | Other | lineage4.9.1 | None | SRR6397575 | Other | lineage4.3.4.2.1 | None | SRR1181250 | Other | lineage4.9 | None | SRR13861248 | Other | lineage4.9 | None | SRR13861267 | Other | lineage4.9 | None | SRR13861694 | Other | lineage4.9 | None | ERR2446433 | Other | lineage4.1.2.1 | None | ERR1034692 | Other | lineage1.2.1.2.1 | None | SRR6397642 | Other | lineage4.4.1.1 | None | SRR6397771 | Other | lineage1.1.1.1 | None | SRR5341417 | HR-TB | lineage3 | None | SRR13861158 | Other | lineage4.9 | None | SRR13861283 | Other | lineage4.9 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR13861411 | Other | lineage4.9 | None | SRR13861268 | Other | lineage4.9 | None | SRR13861286 | Other | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR13861179 | Other | lineage4.9 | None | SRR7646014 | MDR-TB | lineage4.2.1 | None | SRR13861323 | Other | lineage4.9 | None | SRR13861718 | Other | lineage4.9 | None | ERR987733 | Other | lineage4.6.1.1 | None | SRR6785282 | Other | lineage4.3.3 | None | ERR6149876 | Other | La1.8.2 | None | SRR13861147 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861421 | Other | lineage4.9 | None | SRR13861426 | Other | lineage4.9 | None | SRR13861454 | Other | lineage4.9 | None | SRR13861465 | Other | lineage4.9 | None | SRR13861521 | Other | lineage4.9 | None | SRR13861297 | Other | lineage4.9 | None | SRR13861481 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR6397588 | Other | lineage2.2.1 | None | SRR6397727 | Other | lineage4.2.1.1 | None | SRR13861457 | Other | lineage4.9 | None | SRR13861449 | Other | lineage4.9 | None | ERR6201843 | Other | La1.2 | None | SRR13861384 | Other | lineage4.9 | None | SRR13861387 | Other | lineage4.9 | None | SRR13861476 | Other | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861725 | Other | lineage4.9 | None | SRR6397406 | Other | lineage4.1.2.1 | None | SRR13861240 | Other | lineage4.9 | None | SRR13861727 | Other | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR19612366 | Other | lineage4.5 | None | SRR1180252 | Other | lineage4.9 | None | SRR13861143 | RR-TB | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR6152986 | Other | lineage2.2.1 | None | SRR10869241 | Pre-XDR-TB | lineage2.2.1 | None | SRR13861587 | Other | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR13861422 | Other | lineage4.9 | None | SRR13861379 | Other | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR13861157 | Other | lineage4.9 | None | SRR13861579 | Other | lineage4.9 | None | SRR13861164 | Other | lineage4.9 | None | ERR6140667 | Other | La1.8.2 | None | ERR176517 | Sensitive | lineage1.1.3.2 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861293 | Other | lineage4.9 | None | SRR13861191 | Other | lineage4.9 | None | SRR13861150 | Other | lineage4.9 | None | SRR5341390 | HR-TB | lineage1.1.2 | None | SRR13861343 | Other | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR13591410 | Other | lineage4.9 | None | SRR13861443 | Other | lineage4.9 | None | SRR13861392 | Other | lineage4.9 | None |
|---|
