TB-Profiler result

Run: SRR13861566
Summary

Run ID: SRR13861566

Sample name:

Date: 03-04-2023 09:34:58

Number of reads: 605041

Percentage reads mapped: 15.14

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.21 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.87 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6715 c.-587C>T upstream_gene_variant 1.0
gyrA 9032 c.1731T>C synonymous_variant 0.15
gyrA 9035 c.1734G>C synonymous_variant 0.15
gyrA 9050 p.Asp583Glu missense_variant 0.16
gyrA 9051 c.1750T>C synonymous_variant 0.16
gyrA 9062 c.1761C>G synonymous_variant 0.14
fgd1 490833 c.51G>A synonymous_variant 0.15
fgd1 490842 c.60C>G synonymous_variant 0.17
fgd1 490851 c.69A>C synonymous_variant 0.15
fgd1 490921 p.Gln47Glu missense_variant 0.12
fgd1 490932 c.150T>C synonymous_variant 0.13
fgd1 490948 p.Ser56Ala missense_variant 0.13
mshA 575693 p.Pro116Ala missense_variant 0.95
rpoB 759863 p.Gln19His missense_variant 1.0
rpoB 760181 c.375T>C synonymous_variant 0.15
rpoB 760184 c.378A>G synonymous_variant 0.15
rpoB 760223 c.417T>C synonymous_variant 0.15
rpoB 760399 p.Val198Ala missense_variant 1.0
rpoB 760565 c.759A>G synonymous_variant 0.15
rpoB 760611 c.805T>C synonymous_variant 0.17
rpoB 760634 c.828T>C synonymous_variant 0.22
rpoB 760646 c.840C>G synonymous_variant 0.19
rpoB 760655 c.849A>G synonymous_variant 0.17
rpoB 760661 c.855A>C synonymous_variant 0.22
rpoB 760670 c.864G>C synonymous_variant 0.21
rpoB 760674 c.868T>C synonymous_variant 0.2
rpoB 760679 c.873A>G synonymous_variant 0.21
rpoB 760683 c.877T>C synonymous_variant 0.2
rpoB 760718 c.912C>G synonymous_variant 0.22
rpoB 760721 c.915C>G synonymous_variant 0.22
rpoB 760724 c.918T>C synonymous_variant 0.25
rpoB 760730 c.924T>C synonymous_variant 0.24
rpoB 760751 c.945G>C synonymous_variant 0.29
rpoB 760757 c.951T>C synonymous_variant 0.21
rpoB 760759 p.Val318Ala missense_variant 0.21
rpoB 760763 c.957C>T synonymous_variant 0.21
rpoB 760769 c.963C>G synonymous_variant 0.15
rpoB 760775 c.969G>C synonymous_variant 0.15
rpoB 760776 p.Ser324Thr missense_variant 0.15
rpoB 760919 c.1113C>G synonymous_variant 0.19
rpoB 760925 c.1119T>C synonymous_variant 0.17
rpoB 760928 c.1122G>C synonymous_variant 0.22
rpoB 760934 c.1128C>T synonymous_variant 0.17
rpoB 760982 c.1176G>C synonymous_variant 0.14
rpoB 760985 c.1179G>C synonymous_variant 0.13
rpoB 760991 c.1185G>C synonymous_variant 0.13
rpoB 761015 c.1209G>C synonymous_variant 0.18
rpoB 761021 c.1215G>C synonymous_variant 0.19
rpoB 761027 c.1221A>G synonymous_variant 0.15
rpoB 761036 c.1230G>C synonymous_variant 0.14
rpoB 761037 c.1231T>C synonymous_variant 0.14
rpoB 761094 c.1288C>T synonymous_variant 0.21
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.21
rpoB 761102 c.1296A>G synonymous_variant 0.22
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.22
rpoB 761150 c.1344A>C synonymous_variant 0.19
rpoB 761165 c.1359G>C synonymous_variant 0.2
rpoB 761168 c.1362C>G synonymous_variant 0.17
rpoB 761171 c.1365C>T synonymous_variant 0.17
rpoB 761180 c.1374A>C synonymous_variant 0.18
rpoB 761183 c.1377T>G synonymous_variant 0.19
rpoB 761189 c.1383T>G synonymous_variant 0.17
rpoB 761222 c.1416G>C synonymous_variant 0.16
rpoB 761249 c.1443A>G synonymous_variant 0.13
rpoB 761255 c.1449T>G synonymous_variant 0.13
rpoB 761327 c.1521A>G synonymous_variant 0.14
rpoB 761360 c.1554T>C synonymous_variant 0.16
rpoB 761362 p.Ser519Thr missense_variant 0.16
rpoB 761570 c.1764T>C synonymous_variant 0.14
rpoB 763150 p.Phe1115Tyr missense_variant 1.0
rpoC 763441 c.72C>G synonymous_variant 0.14
rpoC 763444 c.75T>C synonymous_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.14
rpoC 763658 p.Leu97Phe missense_variant 0.14
rpoC 763675 c.306C>G synonymous_variant 0.16
rpoC 763708 c.339G>A synonymous_variant 0.15
rpoC 763732 c.363C>G synonymous_variant 0.14
rpoC 763735 c.366G>C synonymous_variant 0.15
rpoC 763744 c.375G>C synonymous_variant 0.15
rpoC 763765 c.396T>C synonymous_variant 0.16
rpoC 763768 c.399C>G synonymous_variant 0.17
rpoC 763780 c.411C>G synonymous_variant 0.15
rpoC 763783 c.414G>C synonymous_variant 0.14
rpoC 764516 p.Asp383Asn missense_variant 0.88
rpoC 765613 p.His748Gln missense_variant 0.15
rpoC 765625 c.2256C>G synonymous_variant 0.16
rpoC 765628 c.2259G>C synonymous_variant 0.17
rpoC 765631 p.Asp754Glu missense_variant 0.16
rpoC 765658 c.2289C>T synonymous_variant 0.16
rpoC 765883 c.2514C>G synonymous_variant 0.16
rpoC 765886 c.2517C>G synonymous_variant 0.16
rpoC 765892 c.2523T>C synonymous_variant 0.16
rpoC 766103 p.Arg912Gly missense_variant 0.88
mmpL5 775834 p.Ala883Ser missense_variant 0.16
mmpL5 775851 p.Ser877Thr missense_variant 0.14
mmpL5 775856 c.2625T>C synonymous_variant 0.14
mmpL5 775916 c.2565T>G synonymous_variant 0.15
mmpL5 777066 p.Ile472Ser missense_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 0.18
rpsL 781715 c.156T>C synonymous_variant 0.18
rpsL 781728 c.169T>C synonymous_variant 0.15
rplC 801228 c.420T>C synonymous_variant 0.15
fbiC 1304001 c.1071C>G synonymous_variant 0.14
fbiC 1304008 c.1078T>C synonymous_variant 0.13
fbiC 1305297 c.2367G>C synonymous_variant 0.14
fbiC 1305300 c.2370A>G synonymous_variant 0.14
fbiC 1305303 c.2373T>C synonymous_variant 0.14
fbiC 1305311 p.Arg794Gln missense_variant 0.14
fbiC 1305331 p.Glu801Asn missense_variant 0.14
fbiC 1305336 c.2406T>C synonymous_variant 0.14
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.16
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.35
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.35
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.55
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.71
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.54
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.76
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.76
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.78
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.74
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.73
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.77
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.77
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.77
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.73
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.74
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.74
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.74
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.74
rrs 1472230 n.385C>T non_coding_transcript_exon_variant 0.24
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.73
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.73
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.72
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.64
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.61
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.44
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.39
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 0.27
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.29
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.25
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.53
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.77
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.77
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.77
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.75
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.76
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.76
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.78
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.79
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.79
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.8
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.8
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.8
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.8
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.79
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.86
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.88
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.88
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.85
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.84
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.84
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.84
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.85
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.85
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.86
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.85
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.87
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.87
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.59
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.36
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.31
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.34
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.35
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.33
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.35
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.35
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.35
rrs 1473281 n.1436C>A non_coding_transcript_exon_variant 0.36
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.38
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.35
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.35
rrs 1473297 n.1452G>T non_coding_transcript_exon_variant 0.35
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.36
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.36
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.36
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.38
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.14
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.13
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.13
rrl 1474991 n.1334T>C non_coding_transcript_exon_variant 0.16
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.16
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.28
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.35
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.25
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.24
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.25
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.24
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.28
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.28
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.29
rrl 1475271 n.1614A>C non_coding_transcript_exon_variant 0.25
rrl 1475273 n.1616T>A non_coding_transcript_exon_variant 0.25
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.24
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.24
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.31
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.29
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.29
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.25
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.25
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.19
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.21
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.24
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.18
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.14
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.21
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.78
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.81
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.84
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.84
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.82
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.83
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.83
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.83
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.83
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.83
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.82
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.83
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.83
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.83
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.83
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.85
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.84
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.86
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.93
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.94
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.94
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.94
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.95
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.94
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.72
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.94
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.94
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.94
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.94
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.95
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.94
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.89
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.84
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.82
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.81
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.8
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.79
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.79
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.79
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.79
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.79
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.79
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.8
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.79
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.77
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.77
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.72
rrl 1476595 n.2938C>G non_coding_transcript_exon_variant 0.21
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.12
rrl 1476759 n.3102T>C non_coding_transcript_exon_variant 0.12
rpsA 1834097 p.Ser186Thr missense_variant 0.14
rpsA 1834102 c.561T>C synonymous_variant 0.15
rpsA 1834498 c.957C>T synonymous_variant 0.12
rpsA 1834623 p.Ser361Trp missense_variant 0.16
ndh 2103185 c.-143A>C upstream_gene_variant 1.0
PPE35 2168894 c.1718dupG frameshift_variant 1.0
PPE35 2170039 p.Ala192Thr missense_variant 1.0
Rv1979c 2221777 p.Ala463Val missense_variant 1.0
kasA 2518793 p.Ser227Thr missense_variant 1.0
kasA 2519068 c.954C>T synonymous_variant 0.17
kasA 2519072 p.Ala320Thr missense_variant 0.14
kasA 2519077 c.963G>C synonymous_variant 0.14
kasA 2519173 c.1059C>G synonymous_variant 0.14
ahpC 2726300 c.108C>A synonymous_variant 0.95
folC 2747094 p.Asp169His missense_variant 1.0
Rv2752c 3064936 p.Ser419* stop_gained 1.0
Rv2752c 3065523 c.669C>T synonymous_variant 0.94
Rv2752c 3066039 c.153C>T synonymous_variant 1.0
thyX 3067367 c.579G>C synonymous_variant 0.14
thyX 3067376 c.570G>C synonymous_variant 0.15
thyX 3067391 c.555G>C synonymous_variant 0.21
thyX 3067394 c.552G>C synonymous_variant 0.19
thyX 3067412 c.534C>G synonymous_variant 0.17
thyX 3067439 c.507A>G synonymous_variant 0.17
thyX 3067445 c.501C>G synonymous_variant 0.17
thyA 3073953 c.519T>C synonymous_variant 0.15
thyA 3073977 c.495A>G synonymous_variant 0.15
thyA 3073989 c.483T>C synonymous_variant 0.15
thyA 3074001 c.471C>G synonymous_variant 0.14
thyA 3074004 c.468T>C synonymous_variant 0.14
thyA 3074010 c.462C>G synonymous_variant 0.17
thyA 3074031 c.441T>C synonymous_variant 0.14
thyA 3074037 c.435C>G synonymous_variant 0.14
thyA 3074199 c.273G>A synonymous_variant 0.13
thyA 3074205 p.Glu89Asp missense_variant 0.12
alr 3841286 c.135T>A synonymous_variant 1.0
rpoA 3877866 c.642G>C synonymous_variant 0.19
rpoA 3877872 c.636C>T synonymous_variant 0.21
rpoA 3877875 c.633T>G synonymous_variant 0.2
rpoA 3877899 p.Ser203Arg missense_variant 0.13
rpoA 3877953 c.555G>A synonymous_variant 0.22
rpoA 3877962 c.546G>T synonymous_variant 0.22
rpoA 3877986 c.522G>C synonymous_variant 0.24
rpoA 3877989 c.519A>G synonymous_variant 0.24
rpoA 3878001 c.507A>G synonymous_variant 0.24
rpoA 3878022 c.486T>C synonymous_variant 0.17
rpoA 3878025 c.483C>T synonymous_variant 0.18
rpoA 3878028 c.480G>C synonymous_variant 0.17
rpoA 3878031 c.477T>C synonymous_variant 0.18
rpoA 3878040 c.468T>C synonymous_variant 0.19
rpoA 3878046 c.462T>C synonymous_variant 0.19
rpoA 3878049 c.459G>C synonymous_variant 0.19
rpoA 3878055 c.453A>G synonymous_variant 0.21
rpoA 3878061 c.447G>C synonymous_variant 0.19
rpoA 3878067 c.441C>G synonymous_variant 0.19
rpoA 3878070 c.438T>C synonymous_variant 0.19
rpoA 3878082 c.426T>C synonymous_variant 0.19
rpoA 3878094 c.414C>G synonymous_variant 0.18
rpoA 3878100 c.408C>G synonymous_variant 0.17
clpC1 4038748 p.Arg653Cys missense_variant 0.13
clpC1 4038755 c.1950G>C synonymous_variant 0.13
clpC1 4039368 p.Lys446Thr missense_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 0.13
embC 4240726 c.864G>C synonymous_variant 0.21
embC 4240780 c.918T>C synonymous_variant 0.21
embC 4240783 c.921G>C synonymous_variant 0.21
embC 4240789 c.927T>C synonymous_variant 0.21
embC 4240819 c.957A>G synonymous_variant 0.25
embC 4240825 c.963G>A synonymous_variant 0.25
embC 4240831 c.969T>G synonymous_variant 0.25
embC 4240867 c.1005T>G synonymous_variant 0.19
embC 4240870 c.1008T>C synonymous_variant 0.19
embC 4240879 c.1017G>C synonymous_variant 0.17
embC 4240880 p.Ala340Thr missense_variant 0.17
embC 4240885 c.1023T>C synonymous_variant 0.2
embC 4240897 c.1035C>G synonymous_variant 0.21
embC 4240900 c.1038A>G synonymous_variant 0.23
embC 4240919 c.1057_1059delCTCinsTTG synonymous_variant 0.14
embC 4240936 c.1074A>G synonymous_variant 0.2
embC 4240945 c.1083T>C synonymous_variant 0.19
embC 4240951 c.1089C>G synonymous_variant 0.17
embC 4240957 c.1095C>G synonymous_variant 0.14
embC 4240966 c.1104G>T synonymous_variant 0.14
embC 4241035 c.1173G>A synonymous_variant 0.16
embC 4241050 c.1188T>G synonymous_variant 0.15
embC 4241104 c.1242G>A synonymous_variant 0.21
embC 4241107 c.1245G>C synonymous_variant 0.21
embC 4241137 c.1275G>C synonymous_variant 0.19
embC 4241140 c.1278A>G synonymous_variant 0.19
embC 4241141 p.Ile427Val missense_variant 0.19
embC 4241158 c.1296T>C synonymous_variant 0.18
embC 4241161 c.1299C>G synonymous_variant 0.18
embC 4241162 c.1300T>C synonymous_variant 0.18
embC 4241203 c.1341T>C synonymous_variant 0.14
embC 4241777 p.Gly639Ser missense_variant 0.93
embB 4247464 c.951C>G synonymous_variant 0.14
embB 4247491 c.978G>C synonymous_variant 0.21
embB 4247497 c.984T>C synonymous_variant 0.21
embB 4247500 c.987C>G synonymous_variant 0.21
embB 4247512 c.999T>C synonymous_variant 0.23
embB 4247536 c.1023C>G synonymous_variant 0.18
embB 4247629 c.1116C>G synonymous_variant 0.18
embB 4248127 c.1614G>C synonymous_variant 0.16
embB 4248133 c.1620C>G synonymous_variant 0.15
embB 4248142 c.1629T>C synonymous_variant 0.16
embB 4248143 c.1630T>C synonymous_variant 0.15
embB 4248157 c.1644A>G synonymous_variant 0.16
embB 4248206 p.Ser565Gly missense_variant 0.21
embB 4248220 c.1707A>G synonymous_variant 0.21
embB 4248241 c.1728C>T synonymous_variant 0.19
embB 4249268 p.Asp919Tyr missense_variant 0.17
embB 4249276 c.2763A>G synonymous_variant 0.17
embB 4249282 c.2769A>C synonymous_variant 0.18
embB 4249297 c.2784G>C synonymous_variant 0.17
aftB 4269075 c.-239T>C upstream_gene_variant 0.14
ubiA 4269088 p.Ala249Val missense_variant 0.13
ubiA 4269104 p.Ser244Gly missense_variant 0.14
ubiA 4269106 c.727delT frameshift_variant 0.14
ubiA 4269117 p.Glu239Asp missense_variant 0.14
ubiA 4269141 p.Leu231Val missense_variant 0.14
aftB 4269144 c.-308C>G upstream_gene_variant 0.14
ubiA 4269149 p.Val229Leu missense_variant 0.14
aftB 4269183 c.-347T>C upstream_gene_variant 0.15
ubiA 4269888 c.-55C>A upstream_gene_variant 1.0