TB-Profiler result

Run: SRR13861372
Summary

Run ID: SRR13861372

Sample name:

Date: 03-04-2023 09:30:06

Number of reads: 186704

Percentage reads mapped: 9.34

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.86 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6715 c.-587C>T upstream_gene_variant 1.0
gyrA 7838 c.537C>G synonymous_variant 0.29
gyrA 8156 c.855T>C synonymous_variant 0.4
gyrA 8204 c.903C>T synonymous_variant 0.33
gyrA 8207 c.906T>C synonymous_variant 0.33
gyrA 8216 c.915G>A synonymous_variant 0.33
gyrA 8219 c.918T>C synonymous_variant 0.33
gyrA 8225 c.924T>C synonymous_variant 0.33
gyrA 8234 c.933T>G synonymous_variant 0.33
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.33
gyrA 8253 p.Ile318Leu missense_variant 0.33
gyrA 8693 c.1392T>C synonymous_variant 0.2
gyrA 8699 c.1398A>G synonymous_variant 0.18
gyrA 8711 c.1410A>C synonymous_variant 0.22
gyrA 8714 c.1413A>G synonymous_variant 0.22
gyrA 8717 c.1416C>G synonymous_variant 0.22
gyrA 8720 c.1419G>A synonymous_variant 0.22
gyrA 8729 c.1428T>C synonymous_variant 0.22
gyrA 8732 c.1431G>C synonymous_variant 0.22
gyrA 8747 c.1446A>G synonymous_variant 0.29
gyrA 8756 c.1455A>G synonymous_variant 0.4
gyrA 8762 c.1461G>C synonymous_variant 0.4
gyrA 8765 p.Asp488Glu missense_variant 0.4
gyrA 8767 p.Arg489Lys missense_variant 0.4
gyrA 8779 p.Asp493Ala missense_variant 0.4
gyrA 8786 c.1485T>C synonymous_variant 0.4
gyrA 8796 p.Ile499Val missense_variant 0.5
gyrA 8801 c.1500G>C synonymous_variant 0.5
gyrA 8810 c.1509A>C synonymous_variant 0.5
gyrA 8816 c.1515C>T synonymous_variant 0.5
gyrA 8852 c.1551T>C synonymous_variant 0.4
gyrA 8858 c.1557T>C synonymous_variant 0.4
gyrA 8867 c.1566A>G synonymous_variant 0.4
gyrA 8870 c.1569G>C synonymous_variant 0.4
gyrA 8873 c.1572A>C synonymous_variant 0.4
gyrA 8897 c.1596T>C synonymous_variant 0.43
gyrA 8903 c.1602T>C synonymous_variant 0.43
gyrA 8915 c.1614A>G synonymous_variant 0.43
gyrA 8939 c.1638T>C synonymous_variant 0.38
gyrA 8942 c.1641G>C synonymous_variant 0.38
gyrA 8945 c.1644G>C synonymous_variant 0.43
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.43
gyrA 8951 p.Lys550Asn missense_variant 0.43
gyrA 8966 c.1665C>G synonymous_variant 0.5
gyrA 8967 p.Ala556Arg missense_variant 0.43
gyrA 8987 c.1686C>G synonymous_variant 0.5
gyrA 8990 c.1689C>G synonymous_variant 0.5
gyrA 8996 c.1695T>C synonymous_variant 0.4
gyrA 8998 p.Leu566Trp missense_variant 0.4
gyrA 9023 c.1722A>C synonymous_variant 0.33
gyrA 9029 c.1728T>C synonymous_variant 0.33
gyrA 9032 c.1731T>C synonymous_variant 0.33
gyrA 9062 c.1761C>G synonymous_variant 0.4
gyrA 9153 p.Thr618Ala missense_variant 0.5
gyrA 9252 p.Val651Ile missense_variant 0.33
fgd1 490948 p.Ser56Ala missense_variant 0.2
fgd1 490962 c.180T>C synonymous_variant 0.22
fgd1 490988 p.Leu69Pro missense_variant 0.25
fgd1 491514 p.Asn244Lys missense_variant 0.17
fgd1 491547 c.765A>C synonymous_variant 0.17
fgd1 491550 c.768T>C synonymous_variant 0.15
fgd1 491583 c.801G>A synonymous_variant 0.17
fgd1 491595 c.813C>G synonymous_variant 0.17
fgd1 491601 c.819T>C synonymous_variant 0.18
mshA 575693 p.Pro116Ala missense_variant 1.0
rpoB 760399 p.Val198Ala missense_variant 1.0
rpoB 763150 p.Phe1115Tyr missense_variant 1.0
rpoC 764516 p.Asp383Asn missense_variant 1.0
rpoC 765499 c.2130C>G synonymous_variant 0.18
rpoC 765508 c.2139C>G synonymous_variant 0.18
rpoC 765541 c.2172C>G synonymous_variant 0.33
rpoC 765553 c.2184C>T synonymous_variant 0.33
rpoC 765556 c.2187G>C synonymous_variant 0.33
rpoC 765559 c.2190G>C synonymous_variant 0.33
rpoC 765578 c.2209C>T synonymous_variant 0.4
rpoC 765583 c.2214G>T synonymous_variant 0.33
rpoC 765613 p.His748Gln missense_variant 0.4
rpoC 765625 c.2256C>G synonymous_variant 0.29
rpoC 766103 p.Arg912Gly missense_variant 1.0
rpoC 766726 c.3357T>C synonymous_variant 0.22
rpoC 766738 c.3369G>T synonymous_variant 0.22
rpoC 766750 c.3381C>G synonymous_variant 0.22
rpoC 766765 c.3396A>C synonymous_variant 0.22
rpoC 766774 c.3405T>C synonymous_variant 0.22
rpoC 766801 c.3432C>A synonymous_variant 0.2
rpoC 766804 c.3435A>G synonymous_variant 0.2
rpoC 766843 c.3474T>C synonymous_variant 0.22
rpoC 766894 c.3525T>C synonymous_variant 0.22
rpoC 766895 c.3526T>C synonymous_variant 0.22
rpoC 766900 c.3531T>C synonymous_variant 0.22
rpoC 766933 c.3564A>G synonymous_variant 0.22
rpoC 766945 c.3576A>G synonymous_variant 0.22
rpoC 766963 c.3594T>C synonymous_variant 0.3
rpoC 766978 c.3609C>G synonymous_variant 0.3
rpoC 766996 c.3627C>T synonymous_variant 0.22
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.25
rpoC 767014 c.3645G>C synonymous_variant 0.29
rpoC 767119 c.3750A>G synonymous_variant 0.4
rpoC 767134 c.3765C>G synonymous_variant 0.33
rpoC 767158 c.3789T>C synonymous_variant 0.33
rpoC 767167 c.3798C>G synonymous_variant 0.33
rpoC 767180 p.Ala1271Gln missense_variant 0.33
rpoC 767191 c.3822C>G synonymous_variant 0.33
rpoC 767206 c.3837C>G synonymous_variant 0.33
rpoC 767209 c.3840T>C synonymous_variant 0.4
rpoC 767212 c.3843G>C synonymous_variant 0.4
rpoC 767221 c.3852C>G synonymous_variant 0.25
rpoC 767230 c.3861G>C synonymous_variant 0.29
rpoC 767233 c.3864T>C synonymous_variant 0.29
mmpL5 775975 c.2506T>C synonymous_variant 0.22
mmpL5 775981 p.Leu834Met missense_variant 0.22
mmpL5 775997 c.2484T>C synonymous_variant 0.2
mmpL5 777066 p.Ile472Ser missense_variant 1.0
rplC 801127 p.Ala107Thr missense_variant 0.18
rplC 801147 c.339T>C synonymous_variant 0.17
rplC 801150 c.342G>C synonymous_variant 0.17
rplC 801153 c.345G>C synonymous_variant 0.17
rplC 801156 c.348T>A synonymous_variant 0.15
rplC 801171 c.363A>G synonymous_variant 0.2
rplC 801174 c.366T>C synonymous_variant 0.2
rplC 801222 c.414T>C synonymous_variant 0.18
rplC 801228 c.420T>C synonymous_variant 0.18
rplC 801246 c.438C>G synonymous_variant 0.18
rplC 801249 c.441T>G synonymous_variant 0.18
rplC 801255 c.447C>T synonymous_variant 0.2
rplC 801267 c.459A>C synonymous_variant 0.23
rplC 801270 c.462T>C synonymous_variant 0.17
rplC 801276 c.468G>C synonymous_variant 0.17
rplC 801279 c.471G>C synonymous_variant 0.17
rplC 801282 c.474G>C synonymous_variant 0.17
rplC 801301 c.493C>A synonymous_variant 0.2
rplC 801312 c.504G>C synonymous_variant 0.22
rplC 801324 c.516T>C synonymous_variant 0.22
rplC 801336 c.528C>G synonymous_variant 0.2
rplC 801339 c.531T>C synonymous_variant 0.2
rplC 801341 p.Leu178Gln missense_variant 0.2
rplC 801348 c.540T>G synonymous_variant 0.22
rplC 801357 c.549T>C synonymous_variant 0.2
rplC 801367 p.Ala187Thr missense_variant 0.22
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.25
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.25
rrs 1472028 n.183A>T non_coding_transcript_exon_variant 0.4
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.4
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.4
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.4
rrs 1472044 n.199G>C non_coding_transcript_exon_variant 0.5
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.5
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.5
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.29
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.55
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.55
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.78
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.9
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.72
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.89
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.89
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.9
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.9
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.9
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.9
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.9
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.9
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.94
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.94
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.94
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.94
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.92
rrs 1472230 n.385C>T non_coding_transcript_exon_variant 0.38
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.94
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.94
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.98
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.97
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.96
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.89
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.85
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 0.71
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.71
rrs 1472277 n.432C>A non_coding_transcript_exon_variant 0.6
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.44
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.67
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.88
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.88
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.88
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.88
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.88
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.88
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.86
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.84
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.86
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.86
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.84
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.84
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.84
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.84
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.9
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.91
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.91
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.89
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.88
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.88
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.88
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.87
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.87
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.88
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.88
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.86
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.86
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.59
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.53
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.56
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.56
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.56
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.56
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.56
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.56
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.56
rrs 1473281 n.1436C>A non_coding_transcript_exon_variant 0.5
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.56
rrs 1473288 n.1443C>A non_coding_transcript_exon_variant 0.56
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.56
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.56
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.56
rrs 1473297 n.1452G>T non_coding_transcript_exon_variant 0.56
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.56
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.6
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.59
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.67
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.17
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.17
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.18
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.18
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.17
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.18
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.2
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.25
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.29
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.33
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.5
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.5
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.4
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.22
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.33
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.25
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.29
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.29
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.25
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.25
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.33
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.22
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.25
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.29
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.29
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.33
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.33
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.33
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.33
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.33
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.33
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.55
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.9
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.92
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.94
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.95
rrl 1476263 n.2606C>T non_coding_transcript_exon_variant 0.22
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.95
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.95
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.95
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.95
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.94
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.95
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.95
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.95
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.95
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.95
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.95
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.95
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.95
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.96
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.97
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.98
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.98
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.98
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.98
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.98
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.77
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.98
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.97
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.97
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.97
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.97
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.96
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.94
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.93
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.92
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.92
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.92
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.92
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.92
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.91
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.91
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.92
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.92
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.93
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.93
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.92
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.92
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.92
rrl 1476595 n.2938C>G non_coding_transcript_exon_variant 0.6
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.43
rpsA 1833724 c.183C>G synonymous_variant 0.5
rpsA 1833727 c.186G>C synonymous_variant 0.5
rpsA 1833742 c.201A>G synonymous_variant 0.5
rpsA 1833745 c.204G>C synonymous_variant 0.5
rpsA 1833787 c.246C>G synonymous_variant 0.67
rpsA 1833790 c.249T>A synonymous_variant 0.67
rpsA 1833799 c.258C>G synonymous_variant 0.67
rpsA 1833811 c.270G>C synonymous_variant 0.62
rpsA 1833838 c.297G>C synonymous_variant 0.57
rpsA 1833841 c.300C>G synonymous_variant 0.57
rpsA 1833847 c.306C>G synonymous_variant 0.5
rpsA 1833856 c.315A>G synonymous_variant 0.44
rpsA 1833862 c.321G>T synonymous_variant 0.38
rpsA 1833874 c.333T>C synonymous_variant 0.33
rpsA 1833928 c.387G>C synonymous_variant 0.43
rpsA 1833940 c.399C>G synonymous_variant 0.38
rpsA 1833970 c.429G>C synonymous_variant 0.29
rpsA 1833979 c.438T>C synonymous_variant 0.29
rpsA 1834000 c.459G>C synonymous_variant 0.33
rpsA 1834015 c.474G>C synonymous_variant 0.33
rpsA 1834021 c.480C>T synonymous_variant 0.33
ndh 2103185 c.-143A>C upstream_gene_variant 1.0
PPE35 2168894 c.1718dupG frameshift_variant 1.0
PPE35 2170039 p.Ala192Thr missense_variant 1.0
Rv1979c 2221777 p.Ala463Val missense_variant 1.0
pncA 2289958 c.-717T>C upstream_gene_variant 0.33
pncA 2289991 c.-750G>C upstream_gene_variant 0.25
pncA 2289994 c.-753A>G upstream_gene_variant 0.29
pncA 2289997 c.-756G>C upstream_gene_variant 0.29
pncA 2290006 c.-765T>C upstream_gene_variant 0.33
pncA 2290009 c.-768A>G upstream_gene_variant 0.29
pncA 2290015 c.-774A>C upstream_gene_variant 0.29
pncA 2290027 c.-786G>A upstream_gene_variant 0.33
pncA 2290030 c.-791_-789delAATinsCAC upstream_gene_variant 0.33
pncA 2290033 c.-792C>G upstream_gene_variant 0.33
pncA 2290038 c.-797G>T upstream_gene_variant 0.33
pncA 2290042 c.-801T>C upstream_gene_variant 0.33
pncA 2290071 c.-830A>G upstream_gene_variant 0.29
pncA 2290072 c.-831T>C upstream_gene_variant 0.29
pncA 2290087 c.-846T>C upstream_gene_variant 0.29
kasA 2518793 p.Ser227Thr missense_variant 0.8
ahpC 2726300 c.108C>A synonymous_variant 1.0
folC 2747094 p.Asp169His missense_variant 1.0
Rv2752c 3064936 p.Ser419* stop_gained 1.0
Rv2752c 3065523 c.669C>T synonymous_variant 1.0
Rv2752c 3066039 c.153C>T synonymous_variant 0.8
alr 3841286 c.135T>A synonymous_variant 1.0
clpC1 4038974 c.1731T>C synonymous_variant 0.25
clpC1 4039368 p.Lys446Thr missense_variant 0.83
clpC1 4039430 c.1275T>C synonymous_variant 0.43
clpC1 4039442 c.1263A>G synonymous_variant 0.43
clpC1 4039448 c.1257A>G synonymous_variant 0.43
clpC1 4039454 c.1251A>G synonymous_variant 0.43
clpC1 4039463 c.1242C>G synonymous_variant 0.3
clpC1 4039466 c.1239T>C synonymous_variant 0.3
clpC1 4039469 c.1236T>C synonymous_variant 0.3
clpC1 4039481 c.1224T>G synonymous_variant 0.3
clpC1 4039484 c.1221T>G synonymous_variant 0.3
clpC1 4039517 c.1188C>G synonymous_variant 0.22
clpC1 4039524 p.Phe394Tyr missense_variant 0.22
clpC1 4039547 c.1158C>G synonymous_variant 0.31
clpC1 4039553 c.1152C>G synonymous_variant 0.31
clpC1 4039562 c.1143C>G synonymous_variant 0.25
clpC1 4039565 c.1140G>C synonymous_variant 0.25
clpC1 4039576 p.Ala377Ser missense_variant 0.18
clpC1 4039586 c.1119G>C synonymous_variant 0.31
clpC1 4039610 c.1095G>C synonymous_variant 0.36
clpC1 4039616 c.1089G>C synonymous_variant 0.4
clpC1 4039622 c.1083C>G synonymous_variant 0.33
clpC1 4039682 c.1023C>G synonymous_variant 0.25
clpC1 4039685 c.1020C>T synonymous_variant 0.25
clpC1 4039694 c.1011G>C synonymous_variant 0.25
clpC1 4039724 c.981A>G synonymous_variant 0.27
clpC1 4040441 c.264C>G synonymous_variant 0.29
panD 4044138 c.144T>C synonymous_variant 0.33
panD 4044150 c.132A>G synonymous_variant 0.29
panD 4044162 c.120A>G synonymous_variant 0.33
panD 4044165 c.117G>C synonymous_variant 0.33
panD 4044188 c.94T>C synonymous_variant 0.4
panD 4044195 c.87T>C synonymous_variant 0.4
panD 4044213 c.69C>G synonymous_variant 0.33
embC 4241777 p.Gly639Ser missense_variant 1.0
embA 4245355 p.Ala708Gly missense_variant 0.5
embA 4245368 c.2136T>C synonymous_variant 0.4
embB 4247824 c.1311C>G synonymous_variant 0.25
embB 4247830 c.1317A>C synonymous_variant 0.25
embB 4247836 c.1323A>G synonymous_variant 0.25
embB 4247842 c.1329T>C synonymous_variant 0.22
embB 4247876 c.1363C>T synonymous_variant 0.38
embB 4247881 c.1368G>C synonymous_variant 0.38
embB 4247887 c.1374C>T synonymous_variant 0.43
embB 4247890 c.1377C>T synonymous_variant 0.43
embB 4247899 p.Met462Ile missense_variant 0.5
embB 4247905 c.1392G>C synonymous_variant 0.4
embB 4247909 c.1396T>C synonymous_variant 0.4
embB 4247914 c.1401G>C synonymous_variant 0.4
embB 4247920 c.1407T>G synonymous_variant 0.4
embB 4247923 c.1410T>C synonymous_variant 0.4
embB 4247926 c.1413C>G synonymous_variant 0.4
embB 4247927 p.Leu472Val missense_variant 0.4
embB 4247932 c.1419C>G synonymous_variant 0.33
embB 4247938 c.1425G>C synonymous_variant 0.4
embB 4247940 p.Leu476Trp missense_variant 0.4
embB 4247945 c.1432T>C synonymous_variant 0.4
embB 4247951 p.Ser480Ala missense_variant 0.43
embB 4247956 c.1443G>C synonymous_variant 0.38
embB 4247974 c.1461C>G synonymous_variant 0.33
embB 4247977 c.1464C>G synonymous_variant 0.33
embB 4247986 c.1473C>G synonymous_variant 0.29
embB 4248007 c.1494C>G synonymous_variant 0.33
embB 4248011 p.Ser500Ala missense_variant 0.29
embB 4248035 p.Val508Ile missense_variant 0.29
embB 4248041 p.Ala510Thr missense_variant 0.29
embB 4248044 p.Lys511Ala missense_variant 0.29
embB 4248052 c.1539G>A synonymous_variant 0.29
embB 4248055 c.1542G>C synonymous_variant 0.29
embB 4248064 c.1551G>C synonymous_variant 0.29
embB 4248070 c.1557T>C synonymous_variant 0.25
embB 4248085 c.1572T>C synonymous_variant 0.33
embB 4248097 c.1584C>G synonymous_variant 0.38
embB 4248118 c.1605T>C synonymous_variant 0.25
embB 4248127 c.1614G>C synonymous_variant 0.25
embB 4248133 c.1620C>G synonymous_variant 0.25
embB 4248142 c.1629T>C synonymous_variant 0.25
embB 4248143 c.1630T>C synonymous_variant 0.25
embB 4249369 c.2856T>C synonymous_variant 0.2
embB 4249381 c.2868A>G synonymous_variant 0.22
embB 4249456 c.2943G>C synonymous_variant 0.25
embB 4249469 p.Leu986Met missense_variant 0.25
embB 4249483 c.2970C>G synonymous_variant 0.25
embB 4249486 c.2973T>G synonymous_variant 0.25
embB 4249487 c.2974T>C synonymous_variant 0.25
ubiA 4269888 c.-55C>A upstream_gene_variant 1.0