TB-Profiler result

Run: SRR13861324
Summary

Run ID: SRR13861324

Sample name:

Date: 03-04-2023 09:28:58

Number of reads: 156794

Percentage reads mapped: 3.92

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.92 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6655 c.-647T>C upstream_gene_variant 0.67
gyrA 6670 c.-632G>C upstream_gene_variant 0.67
gyrA 6673 c.-629A>C upstream_gene_variant 0.67
gyrA 6700 c.-602T>C upstream_gene_variant 0.67
gyrA 6703 c.-599G>C upstream_gene_variant 0.67
gyrA 6706 c.-596G>A upstream_gene_variant 0.67
gyrA 6709 c.-593A>G upstream_gene_variant 0.67
gyrA 6712 c.-590G>C upstream_gene_variant 0.67
gyrA 6727 c.-575G>T upstream_gene_variant 0.67
gyrA 6730 c.-572A>G upstream_gene_variant 0.67
gyrA 6745 c.-557T>G upstream_gene_variant 0.67
gyrA 6760 c.-542G>C upstream_gene_variant 0.67
gyrA 6778 c.-524C>T upstream_gene_variant 0.67
gyrA 6793 c.-509T>C upstream_gene_variant 0.67
gyrB 6797 p.Gly520Thr missense_variant 0.67
gyrA 6824 c.-478C>T upstream_gene_variant 0.67
gyrA 6841 c.-461T>C upstream_gene_variant 0.67
gyrA 6844 c.-458T>G upstream_gene_variant 0.67
gyrA 6853 c.-449A>G upstream_gene_variant 1.0
gyrA 6856 c.-446T>C upstream_gene_variant 1.0
gyrA 6859 c.-443T>C upstream_gene_variant 1.0
gyrA 6862 c.-440C>G upstream_gene_variant 1.0
gyrA 6878 c.-424T>C upstream_gene_variant 0.67
gyrA 6881 c.-421T>C upstream_gene_variant 0.67
gyrA 8324 c.1023T>C synonymous_variant 0.5
mshA 576184 c.837A>C synonymous_variant 0.33
rpoB 760139 c.333A>G synonymous_variant 0.2
rpoB 760142 c.336C>G synonymous_variant 0.2
rpoB 760181 c.375T>C synonymous_variant 0.3
rpoB 760184 c.378A>G synonymous_variant 0.38
rpoB 760196 c.390C>G synonymous_variant 0.33
rpoB 760223 c.417T>C synonymous_variant 0.36
rpoB 760235 c.429T>C synonymous_variant 0.33
rpoB 760283 c.477G>C synonymous_variant 0.4
rpoB 760307 c.501T>C synonymous_variant 0.38
rpoB 760328 c.522G>C synonymous_variant 0.44
rpoB 760331 c.525G>C synonymous_variant 0.44
rpoB 760337 c.531C>G synonymous_variant 0.5
rpoB 760340 c.534G>C synonymous_variant 0.5
rpoB 760361 c.555T>C synonymous_variant 0.4
rpoB 760376 p.Asp190Glu missense_variant 0.22
rpoB 760406 c.600G>C synonymous_variant 0.33
rpoB 760418 c.612G>C synonymous_variant 0.33
rpoB 760424 c.618C>G synonymous_variant 0.33
rpoB 760430 c.624T>C synonymous_variant 0.33
rpoB 760475 c.669A>G synonymous_variant 0.22
rpoB 760481 c.675G>C synonymous_variant 0.25
rpoB 760484 c.678A>G synonymous_variant 0.25
rpoB 760514 c.708C>T synonymous_variant 0.33
rpoB 760522 p.Ser239Asn missense_variant 0.4
rpoB 760919 c.1113C>G synonymous_variant 0.33
rpoB 760925 c.1119T>C synonymous_variant 0.33
rpoB 760928 c.1122G>C synonymous_variant 0.33
rpoB 760934 c.1128C>T synonymous_variant 0.29
rpoB 760946 c.1140A>G synonymous_variant 0.25
rpoB 760970 c.1164G>C synonymous_variant 0.29
rpoB 760982 c.1176G>C synonymous_variant 0.29
rpoB 760985 c.1179G>C synonymous_variant 0.29
rpoB 760991 c.1185G>C synonymous_variant 0.29
rpoB 761015 c.1209G>C synonymous_variant 0.29
rpoB 761094 c.1288C>T synonymous_variant 0.29
rpoB 761097 c.1291_1292delAGinsTC synonymous_variant 0.29
rpoB 761102 c.1296A>G synonymous_variant 0.29
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.29
rpoB 761150 c.1344A>C synonymous_variant 0.29
rpoB 761165 c.1359G>C synonymous_variant 0.29
rpoB 761168 c.1362C>G synonymous_variant 0.29
rpoB 761171 c.1365C>T synonymous_variant 0.29
rpoB 761180 c.1374A>C synonymous_variant 0.25
rpoB 761492 c.1686G>C synonymous_variant 0.4
rpoB 761510 c.1704T>C synonymous_variant 0.4
rpoB 761531 c.1725C>G synonymous_variant 0.4
rpoB 761534 c.1728G>A synonymous_variant 0.4
rpoB 761537 c.1731C>G synonymous_variant 0.4
rpoB 761570 c.1764T>C synonymous_variant 0.4
rpoB 761573 c.1767C>G synonymous_variant 0.4
rpoB 761579 c.1773G>C synonymous_variant 0.4
rpoB 761606 c.1800C>G synonymous_variant 0.4
rpoB 761612 c.1806G>C synonymous_variant 0.4
rpoB 761615 c.1809A>C synonymous_variant 0.4
rpoC 765383 p.Met672Leu missense_variant 0.33
rpoC 765404 p.Leu679Val missense_variant 0.33
rpoC 765409 c.2040T>C synonymous_variant 0.33
rpoC 765412 c.2043T>C synonymous_variant 0.33
rpoC 765421 c.2052C>G synonymous_variant 0.33
rpoC 765451 c.2082C>G synonymous_variant 0.33
rpoC 765452 p.Ala695Ser missense_variant 0.29
rpoC 765499 c.2130C>G synonymous_variant 0.33
rpoC 765508 c.2139C>G synonymous_variant 0.33
rplC 800612 c.-197A>G upstream_gene_variant 0.67
rplC 800618 c.-191T>C upstream_gene_variant 0.67
rplC 800648 c.-161A>C upstream_gene_variant 0.67
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.5
rrs 1472101 n.256G>A non_coding_transcript_exon_variant 0.71
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.75
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.84
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.89
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.71
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.91
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.91
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.92
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.93
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.93
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.93
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.93
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.94
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.94
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.95
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.94
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.94
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.94
rrs 1472230 n.385C>T non_coding_transcript_exon_variant 0.31
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.94
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.94
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.94
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.91
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.91
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.89
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.85
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 0.74
rrs 1472271 n.426T>C non_coding_transcript_exon_variant 0.74
rrs 1472277 n.432C>A non_coding_transcript_exon_variant 0.44
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.9
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.96
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.97
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.96
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.93
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.96
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.95
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.95
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.94
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.92
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.92
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.92
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.92
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.92
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.92
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.92
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.95
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.95
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.95
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.94
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.94
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.95
rrs 1472669 n.824_825insTAGG non_coding_transcript_exon_variant 0.95
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.92
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.92
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.92
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.92
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.92
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.91
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.81
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.21
rrs 1473191 n.1346C>T non_coding_transcript_exon_variant 0.2
rrs 1473206 n.1361G>A non_coding_transcript_exon_variant 0.25
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.71
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.69
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.69
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.69
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.69
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.69
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.69
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.69
rrs 1473281 n.1436C>A non_coding_transcript_exon_variant 0.62
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.62
rrs 1473288 n.1443C>A non_coding_transcript_exon_variant 0.67
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.6
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.67
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.67
rrs 1473297 n.1452G>T non_coding_transcript_exon_variant 0.67
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.67
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.62
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.62
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.62
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.5
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.95
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.96
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.96
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.96
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.96
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.96
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.97
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.97
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.97
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.97
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.97
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.97
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.97
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.96
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.97
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.97
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.97
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.97
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.98
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.99
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.99
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.99
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.99
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.99
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.8
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.99
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.99
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.99
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.99
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.97
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.96
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.94
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.95
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.95
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.95
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.95
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.95
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.95
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.95
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.95
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.95
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.95
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.96
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.96
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.94
rrl 1476595 n.2938C>G non_coding_transcript_exon_variant 0.56
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.43
rpsA 1833851 p.Lys104Gln missense_variant 1.0
rpsA 1834546 c.1005T>C synonymous_variant 0.5
rpsA 1834555 c.1014T>C synonymous_variant 0.5
rpsA 1834558 c.1017C>G synonymous_variant 0.5
rpsA 1834606 c.1065C>G synonymous_variant 0.33
rpsA 1834609 c.1068T>C synonymous_variant 0.33
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.33
rpsA 1834633 c.1092A>G synonymous_variant 0.4
rpsA 1834639 c.1098T>C synonymous_variant 0.4
rpsA 1834666 c.1125G>C synonymous_variant 0.33
rpsA 1834669 c.1128G>C synonymous_variant 0.33
Rv1979c 2223241 c.-77C>G upstream_gene_variant 1.0
pncA 2289811 c.-570C>T upstream_gene_variant 1.0
pncA 2289994 c.-753A>C upstream_gene_variant 1.0
ahpC 2726564 c.372C>T synonymous_variant 0.2
ahpC 2726579 c.387T>C synonymous_variant 0.2
ahpC 2726591 c.399C>G synonymous_variant 0.2
ahpC 2726593 p.Val134Ala missense_variant 0.2
ahpC 2726600 c.408T>C synonymous_variant 0.2
ahpC 2726612 c.420C>G synonymous_variant 0.2
ahpC 2726638 p.Ala149Val missense_variant 0.22
ahpC 2726645 c.453C>G synonymous_variant 0.25
ahpC 2726657 c.465A>C synonymous_variant 0.25
ahpC 2726669 p.Asp159Glu missense_variant 0.25
ahpC 2726672 c.480G>A synonymous_variant 0.25
ahpC 2726675 c.483A>G synonymous_variant 0.29
ahpC 2726681 c.489A>G synonymous_variant 0.29
ahpC 2726687 c.495C>G synonymous_variant 0.33
ahpC 2726690 c.498C>T synonymous_variant 0.33
ahpC 2726693 c.501C>G synonymous_variant 0.33
ahpC 2726696 c.504C>G synonymous_variant 0.33
folC 2747355 p.Val82Ile missense_variant 0.33
folC 2747359 c.240C>G synonymous_variant 0.33
folC 2747362 c.237G>C synonymous_variant 0.33
pepQ 2859859 p.Ala187Glu missense_variant 1.0
Rv2752c 3064886 p.Ala436Pro missense_variant 1.0
Rv2752c 3065258 p.Met312Val missense_variant 1.0
Rv2752c 3066315 c.-124C>A upstream_gene_variant 0.4
Rv3083 3449104 p.Pro201Ala missense_variant 1.0
fprA 3474141 c.135C>G synonymous_variant 0.25
Rv3236c 3612337 c.779delG frameshift_variant 1.0
fbiB 3641723 c.189T>C synonymous_variant 1.0
rpoA 3877507 p.Gly334Ala missense_variant 0.5
rpoA 3877515 c.993G>C synonymous_variant 0.5
rpoA 3877542 c.966C>T synonymous_variant 0.5
rpoA 3877553 p.Glu319Gln missense_variant 0.5
rpoA 3877557 c.951C>G synonymous_variant 0.5
rpoA 3877587 c.921A>G synonymous_variant 0.5
rpoA 3877613 p.Ile299Val missense_variant 0.5
rpoA 3877740 c.768G>T synonymous_variant 1.0
rpoA 3878031 c.477T>C synonymous_variant 0.5
rpoA 3878040 c.468T>C synonymous_variant 0.5
rpoA 3878046 c.462T>C synonymous_variant 0.5
rpoA 3878049 c.459G>C synonymous_variant 0.5
rpoA 3878055 c.453A>G synonymous_variant 0.4
rpoA 3878061 c.447G>C synonymous_variant 0.4
rpoA 3878067 c.441C>G synonymous_variant 0.4
rpoA 3878070 c.438T>C synonymous_variant 0.4
rpoA 3878094 c.414C>G synonymous_variant 0.4
rpoA 3878100 c.408C>G synonymous_variant 0.4
rpoA 3878103 c.405A>G synonymous_variant 0.4
rpoA 3878106 c.402G>C synonymous_variant 0.4
rpoA 3878118 c.390T>C synonymous_variant 0.29
rpoA 3878141 p.Met123Leu missense_variant 0.29
rpoA 3878142 p.Gly122Glu missense_variant 0.29
rpoA 3878169 c.339G>C synonymous_variant 0.25
rpoA 3878217 c.291A>G synonymous_variant 0.2
rpoA 3878220 c.288C>T synonymous_variant 0.2
clpC1 4038293 c.2412G>C synonymous_variant 0.4
clpC1 4038302 c.2403C>G synonymous_variant 0.4
clpC1 4038308 p.Val799Ile missense_variant 0.4
clpC1 4038317 c.2388G>C synonymous_variant 0.33
clpC1 4038347 c.2358G>C synonymous_variant 0.33
clpC1 4038356 c.2349T>C synonymous_variant 0.33
clpC1 4038359 c.2346A>G synonymous_variant 0.33
clpC1 4038368 c.2337T>C synonymous_variant 0.33
clpC1 4038388 c.2317T>C synonymous_variant 0.43
clpC1 4038398 c.2307G>T synonymous_variant 0.38
clpC1 4038403 c.2302T>C synonymous_variant 0.38
clpC1 4038419 c.2286T>C synonymous_variant 0.5
clpC1 4038434 c.2271G>C synonymous_variant 0.43
clpC1 4038444 p.Ala754Lys missense_variant 0.5
clpC1 4038446 c.2259T>C synonymous_variant 0.44
clpC1 4038452 c.2253G>C synonymous_variant 0.44
clpC1 4038461 p.Ala748Asp missense_variant 0.5
clpC1 4038498 p.Ser736Thr missense_variant 0.43
clpC1 4038530 p.Glu725Asp missense_variant 0.43
clpC1 4038536 c.2169C>T synonymous_variant 0.43
clpC1 4038596 c.2109A>G synonymous_variant 0.33
clpC1 4038611 c.2094C>T synonymous_variant 0.5
clpC1 4038623 c.2082A>G synonymous_variant 0.33
clpC1 4038640 p.Asp689Asn missense_variant 0.5
clpC1 4038653 c.2052C>T synonymous_variant 0.43
clpC1 4038658 p.Lys683Gln missense_variant 0.43
clpC1 4038661 p.Ser682Thr missense_variant 0.43
clpC1 4038662 c.2043T>C synonymous_variant 0.43
clpC1 4038671 c.2034T>C synonymous_variant 0.43
clpC1 4038683 c.2022T>C synonymous_variant 0.38
clpC1 4038695 c.2010C>G synonymous_variant 0.29
clpC1 4039694 c.1011G>C synonymous_variant 0.29
clpC1 4039724 c.981A>G synonymous_variant 0.4
clpC1 4039748 c.957G>C synonymous_variant 0.33
clpC1 4039751 c.954A>G synonymous_variant 0.33
clpC1 4039757 c.948A>G synonymous_variant 0.33
clpC1 4039760 c.945T>C synonymous_variant 0.33
clpC1 4039766 c.939T>C synonymous_variant 0.4
clpC1 4039769 c.936C>G synonymous_variant 0.4
clpC1 4039781 c.924G>C synonymous_variant 0.4
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.4
clpC1 4039793 c.912C>G synonymous_variant 0.4
clpC1 4039817 c.888A>T synonymous_variant 0.33
clpC1 4039820 c.885T>G synonymous_variant 0.33
clpC1 4039850 c.855T>C synonymous_variant 0.33
clpC1 4039865 c.840T>C synonymous_variant 0.33
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.33
clpC1 4039931 c.774T>C synonymous_variant 0.29
clpC1 4039946 c.759A>T synonymous_variant 0.33
clpC1 4039952 c.753T>C synonymous_variant 0.33
clpC1 4039958 c.747G>C synonymous_variant 0.4
clpC1 4039979 c.726C>G synonymous_variant 0.33
clpC1 4040201 c.504C>G synonymous_variant 0.29
clpC1 4040207 c.498T>C synonymous_variant 0.33
embC 4241005 c.1143G>T synonymous_variant 1.0
embC 4241081 c.1220delT frameshift_variant 1.0
embC 4242746 p.Pro962Ser missense_variant 1.0
embA 4243969 p.Val246Ala missense_variant 1.0
embB 4247629 c.1116C>G synonymous_variant 0.4
embB 4247632 c.1119C>G synonymous_variant 0.4
embB 4247646 p.Glu378Ala missense_variant 0.33