TB-Profiler result

Run: ERR987733
Summary

Run ID: ERR987733

Sample name:

Date: 02-04-2023 13:22:17

Number of reads: 480126

Percentage reads mapped: 9.17

Strain: lineage4.6.1.1

Drug-resistance: RR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.6 Euro-American T;LAM None 0.99
lineage4.6.1 Euro-American (Uganda) T2 RD724 0.96
lineage4.6.1.1 Euro-American T2-Uganda RD724 0.96
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761139 p.His445Asp missense_variant 1.0 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.97 streptomycin
embB 4247580 p.Ala356Val missense_variant 0.18 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6115 c.876A>G synonymous_variant 0.44
gyrB 6123 p.Ala295Glu missense_variant 0.38
gyrB 6127 c.888G>C synonymous_variant 0.38
gyrB 6172 c.933C>T synonymous_variant 0.57
gyrB 6184 c.945C>G synonymous_variant 0.4
gyrA 6745 c.-557T>C upstream_gene_variant 0.33
gyrA 6751 c.-551G>C upstream_gene_variant 0.43
gyrA 6760 c.-542G>C upstream_gene_variant 0.43
gyrA 6769 c.-533C>T upstream_gene_variant 0.38
gyrA 6775 c.-527G>C upstream_gene_variant 0.29
gyrA 6787 c.-515G>A upstream_gene_variant 0.25
gyrA 6793 c.-509T>C upstream_gene_variant 0.25
gyrB 6797 p.Gly520Thr missense_variant 0.25
gyrA 6802 c.-500G>A upstream_gene_variant 0.25
gyrA 6811 c.-491C>T upstream_gene_variant 0.18
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7391 c.90C>T synonymous_variant 0.15
gyrA 7394 c.93T>C synonymous_variant 0.15
gyrA 7412 c.111C>G synonymous_variant 0.22
gyrA 7422 c.121C>T synonymous_variant 0.22
gyrA 7433 c.132G>C synonymous_variant 0.3
gyrA 7451 c.150C>G synonymous_variant 0.33
gyrA 7457 c.156T>C synonymous_variant 0.3
gyrA 7490 c.189C>G synonymous_variant 0.25
gyrA 7502 c.201C>T synonymous_variant 0.22
gyrA 7526 c.225G>T synonymous_variant 0.23
gyrA 7532 c.231T>C synonymous_variant 0.23
gyrA 7539 p.Thr80Ala missense_variant 0.77
gyrA 7547 c.246C>T synonymous_variant 0.2
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7601 c.300C>G synonymous_variant 0.25
gyrA 7626 c.325C>T synonymous_variant 0.25
gyrA 7631 c.330G>C synonymous_variant 0.25
gyrA 7643 c.342C>T synonymous_variant 0.25
gyrA 7646 c.345C>T synonymous_variant 0.33
gyrA 7697 c.396C>G synonymous_variant 0.33
gyrA 7763 c.462T>C synonymous_variant 0.18
gyrA 7769 c.468C>T synonymous_variant 0.15
gyrA 7787 c.486G>A synonymous_variant 0.18
gyrA 7793 c.492G>C synonymous_variant 0.18
gyrA 7797 c.496_498delCTAinsTTG synonymous_variant 0.17
gyrA 7820 c.519G>C synonymous_variant 0.17
gyrA 7832 c.531G>T synonymous_variant 0.2
gyrA 7835 c.534A>G synonymous_variant 0.2
gyrA 7859 c.558A>C synonymous_variant 0.17
gyrA 7865 c.564T>C synonymous_variant 0.17
gyrA 7868 c.567C>T synonymous_variant 0.17
gyrA 7883 c.582G>C synonymous_variant 0.15
gyrA 7884 p.Arg195Gly missense_variant 0.15
gyrA 7892 c.591G>C synonymous_variant 0.14
gyrA 7898 p.Asp199Glu missense_variant 0.17
gyrA 8360 c.1059G>A synonymous_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 490980 p.Asn66Lys missense_variant 0.33
fgd1 490983 c.201G>A synonymous_variant 0.33
fgd1 490988 p.Leu69Gln missense_variant 0.33
fgd1 490995 c.213C>G synonymous_variant 0.33
fgd1 490998 c.216T>G synonymous_variant 0.33
mshA 575746 c.399C>G synonymous_variant 0.2
mshA 575767 c.420G>A synonymous_variant 0.15
mshA 575771 p.Val142Ser missense_variant 0.15
mshA 575779 p.Glu144Asp missense_variant 0.14
mshA 575780 p.Pro145Ala missense_variant 0.15
mshA 575821 c.474G>C synonymous_variant 0.17
mshA 575824 c.477T>G synonymous_variant 0.15
ccsA 620631 c.741T>G synonymous_variant 0.16
ccsA 620649 c.759A>G synonymous_variant 0.16
ccsA 620652 c.762C>G synonymous_variant 0.16
ccsA 620685 c.795G>A synonymous_variant 0.2
ccsA 620698 p.Val270Ile missense_variant 0.21
rpoB 760070 c.264T>G synonymous_variant 0.29
rpoB 760091 c.285G>C synonymous_variant 0.5
rpoB 760101 c.295T>C synonymous_variant 0.43
rpoB 760112 c.306T>C synonymous_variant 0.5
rpoB 760118 c.312T>C synonymous_variant 0.5
rpoB 760121 c.315T>C synonymous_variant 0.5
rpoB 760130 p.Asp108Glu missense_variant 0.5
rpoB 760139 c.333A>G synonymous_variant 0.5
rpoB 760142 c.336C>G synonymous_variant 0.5
rpoB 760145 c.339C>G synonymous_variant 0.44
rpoB 760181 c.375T>A synonymous_variant 0.25
rpoB 760184 c.378A>G synonymous_variant 0.25
rpoB 760196 c.390C>G synonymous_variant 0.22
rpoB 760235 c.429T>C synonymous_variant 0.42
rpoB 760244 c.438G>C synonymous_variant 0.53
rpoB 760274 c.468G>A synonymous_variant 0.54
rpoB 760295 c.489C>T synonymous_variant 0.54
rpoB 760307 c.501T>C synonymous_variant 0.46
rpoB 760310 c.504G>C synonymous_variant 0.46
rpoB 760328 c.522G>C synonymous_variant 0.4
rpoB 760331 c.525G>C synonymous_variant 0.4
rpoB 760337 c.531C>G synonymous_variant 0.33
rpoB 760340 c.534G>T synonymous_variant 0.22
rpoB 760412 c.606C>T synonymous_variant 0.4
rpoB 760418 c.612G>C synonymous_variant 0.4
rpoB 760424 c.618C>G synonymous_variant 0.29
rpoB 760430 c.624T>C synonymous_variant 0.29
rpoB 760457 c.651C>T synonymous_variant 0.25
rpoB 760472 c.666C>T synonymous_variant 0.25
rpoB 760475 c.669A>G synonymous_variant 0.25
rpoB 760478 c.672C>T synonymous_variant 0.25
rpoB 760481 c.675G>T synonymous_variant 0.33
rpoB 760484 c.678A>G synonymous_variant 0.33
rpoB 760493 c.687C>G synonymous_variant 0.38
rpoB 760520 c.714C>G synonymous_variant 0.4
rpoB 760522 p.Ser239Asn missense_variant 0.5
rpoB 760526 c.720G>A synonymous_variant 0.5
rpoB 760532 c.726T>C synonymous_variant 0.5
rpoB 760533 p.Val243Thr missense_variant 0.67
rpoB 760547 c.741G>C synonymous_variant 0.67
rpoB 760563 p.Arg253Met missense_variant 0.5
rpoB 760591 p.Val262Ala missense_variant 0.5
rpoB 760724 c.918T>C synonymous_variant 0.33
rpoB 760730 c.924T>C synonymous_variant 0.25
rpoB 761240 c.1434C>T synonymous_variant 0.5
rpoB 761249 c.1443A>G synonymous_variant 0.6
rpoB 761255 c.1449T>C synonymous_variant 0.55
rpoB 761261 c.1455G>T synonymous_variant 0.64
rpoB 761264 c.1458C>G synonymous_variant 0.64
rpoB 761282 c.1476C>G synonymous_variant 0.7
rpoB 761327 c.1521A>G synonymous_variant 0.5
rpoB 761345 c.1539G>T synonymous_variant 0.29
rpoB 761492 c.1686G>C synonymous_variant 0.2
rpoB 761504 c.1698C>G synonymous_variant 0.25
rpoB 761510 c.1704T>C synonymous_variant 0.33
rpoB 761531 c.1725C>G synonymous_variant 0.38
rpoB 761537 c.1731C>G synonymous_variant 0.38
rpoB 761558 c.1752C>G synonymous_variant 0.33
rpoB 761570 c.1764T>C synonymous_variant 0.25
rpoB 761573 c.1767C>G synonymous_variant 0.25
rpoB 761579 c.1773G>C synonymous_variant 0.29
rpoB 761750 c.1944G>C synonymous_variant 0.43
rpoB 761765 c.1959T>C synonymous_variant 0.22
rpoB 761772 p.His656Ala missense_variant 0.22
rpoB 761778 p.Asn658Asp missense_variant 0.22
rpoB 761791 p.Arg662His missense_variant 0.22
rpoB 761813 c.2007T>C synonymous_variant 0.22
rpoB 761828 c.2022C>T synonymous_variant 0.22
rpoB 762008 c.2202C>G synonymous_variant 0.27
rpoB 762014 c.2208C>T synonymous_variant 0.27
rpoB 762047 c.2241G>A synonymous_variant 0.3
rpoB 762053 c.2247T>C synonymous_variant 0.4
rpoB 762062 c.2256T>C synonymous_variant 0.44
rpoB 762065 c.2259T>C synonymous_variant 0.44
rpoB 762083 c.2277T>C synonymous_variant 0.54
rpoB 762086 c.2280G>C synonymous_variant 0.5
rpoB 762101 c.2295C>G synonymous_variant 0.46
rpoB 762114 p.Ile770Val missense_variant 0.36
rpoB 762131 c.2325C>G synonymous_variant 0.5
rpoB 762134 c.2328C>G synonymous_variant 0.5
rpoB 762143 c.2337T>C synonymous_variant 0.5
rpoB 762167 c.2361T>C synonymous_variant 0.44
rpoB 762185 c.2379G>C synonymous_variant 0.29
rpoB 762233 c.2427G>T synonymous_variant 0.22
rpoB 762266 c.2460T>C synonymous_variant 0.3
rpoB 762278 c.2472C>T synonymous_variant 0.25
rpoB 762281 c.2475G>A synonymous_variant 0.27
rpoB 762284 c.2478G>C synonymous_variant 0.27
rpoB 762293 c.2487T>C synonymous_variant 0.3
rpoB 762317 c.2511A>G synonymous_variant 0.25
rpoB 762338 c.2532T>C synonymous_variant 0.25
rpoB 762341 c.2535G>C synonymous_variant 0.25
rpoB 762347 c.2541T>C synonymous_variant 0.29
rpoC 762395 c.-975G>C upstream_gene_variant 0.4
rpoC 762398 c.-972T>C upstream_gene_variant 0.5
rpoC 762401 c.-969G>C upstream_gene_variant 0.5
rpoC 762404 c.-966T>C upstream_gene_variant 0.5
rpoC 762410 c.-960T>C upstream_gene_variant 0.5
rpoC 762416 c.-954A>G upstream_gene_variant 0.5
rpoC 762431 c.-939C>T upstream_gene_variant 0.57
rpoC 762449 c.-921C>A upstream_gene_variant 0.57
rpoC 762470 c.-900G>C upstream_gene_variant 0.5
rpoC 763070 c.-300T>C upstream_gene_variant 0.33
rpoC 763082 c.-288C>T upstream_gene_variant 0.29
rpoC 763085 c.-285C>G upstream_gene_variant 0.25
rpoC 763115 c.-255T>C upstream_gene_variant 0.3
rpoC 763127 c.-243G>C upstream_gene_variant 0.33
rpoC 763166 c.-204A>G upstream_gene_variant 0.18
rpoC 763169 c.-201A>G upstream_gene_variant 0.18
rpoC 763226 c.-144A>G upstream_gene_variant 0.2
rpoC 763441 c.72C>T synonymous_variant 0.25
rpoC 763444 c.75T>C synonymous_variant 0.25
rpoC 763456 c.87A>G synonymous_variant 0.27
rpoC 763486 c.117T>G synonymous_variant 0.33
rpoC 763528 c.159G>A synonymous_variant 0.25
rpoC 763603 c.234C>T synonymous_variant 0.29
rpoC 763618 c.249C>T synonymous_variant 0.33
rpoC 763636 c.267T>C synonymous_variant 0.27
rpoC 763660 c.291T>G synonymous_variant 0.21
rpoC 763669 c.300C>G synonymous_variant 0.21
rpoC 763675 c.306C>G synonymous_variant 0.23
rpoC 763836 p.Ala156Val missense_variant 0.3
rpoC 763851 p.Ala161Gly missense_variant 0.29
rpoC 763855 c.486C>T synonymous_variant 0.29
rpoC 763858 c.489A>G synonymous_variant 0.29
rpoC 763872 p.Gly168Ala missense_variant 0.33
rpoC 763876 p.Glu169Asp missense_variant 0.33
rpoC 763879 c.510A>G synonymous_variant 0.43
rpoC 763888 c.519G>C synonymous_variant 0.43
rpoC 763891 c.522G>C synonymous_variant 0.43
rpoC 763894 c.525A>G synonymous_variant 0.43
rpoC 764040 p.Ser224Thr missense_variant 0.29
rpoC 764044 c.675T>G synonymous_variant 0.33
rpoC 764059 c.690G>T synonymous_variant 0.5
rpoC 764083 c.714A>G synonymous_variant 0.4
rpoC 764140 c.771C>T synonymous_variant 0.29
rpoC 764159 c.790C>T synonymous_variant 0.25
rpoC 764167 c.798G>A synonymous_variant 0.25
rpoC 764188 c.819A>G synonymous_variant 0.33
rpoC 764195 p.Ser276Ile missense_variant 0.33
rpoC 764293 c.924G>C synonymous_variant 0.4
rpoC 764428 c.1059G>C synonymous_variant 0.5
rpoC 764431 c.1062G>C synonymous_variant 0.5
rpoC 764434 c.1065A>G synonymous_variant 0.5
rpoC 764446 c.1077T>C synonymous_variant 0.33
rpoC 764449 c.1080G>C synonymous_variant 0.29
rpoC 764452 c.1083T>C synonymous_variant 0.29
rpoC 764458 c.1089G>C synonymous_variant 0.25
rpoC 764461 c.1092A>G synonymous_variant 0.25
rpoC 764497 c.1128A>G synonymous_variant 0.29
rpoC 764532 p.Gly388Ala missense_variant 0.33
rpoC 764626 c.1257C>T synonymous_variant 0.29
rpoC 764650 c.1281G>T synonymous_variant 0.29
rpoC 764686 c.1317C>T synonymous_variant 0.29
rpoC 764746 c.1377G>C synonymous_variant 0.67
rpoC 764749 c.1380G>C synonymous_variant 0.67
rpoC 764752 c.1383G>C synonymous_variant 0.67
rpoC 764764 c.1395T>C synonymous_variant 0.57
rpoC 764782 c.1413C>T synonymous_variant 0.29
rpoC 764815 c.1446A>G synonymous_variant 0.33
rpoC 764858 c.1489T>C synonymous_variant 0.14
rpoC 765367 c.1998C>G synonymous_variant 0.14
rpoC 765370 c.2001G>C synonymous_variant 0.14
rpoC 765383 p.Met672Leu missense_variant 0.23
rpoC 765391 c.2022C>T synonymous_variant 0.29
rpoC 765406 c.2037G>T synonymous_variant 0.27
rpoC 765409 c.2040T>C synonymous_variant 0.27
rpoC 765412 c.2043T>C synonymous_variant 0.29
rpoC 765421 c.2052C>G synonymous_variant 0.31
rpoC 765452 p.Ala695Ser missense_variant 0.46
rpoC 765466 c.2097C>T synonymous_variant 0.42
rpoC 765478 c.2109T>C synonymous_variant 0.36
rpoC 765493 c.2124G>C synonymous_variant 0.27
rpoC 765499 c.2130C>G synonymous_variant 0.27
rpoC 765508 c.2139C>G synonymous_variant 0.3
rpoC 765517 c.2148C>G synonymous_variant 0.36
rpoC 765529 c.2160C>T synonymous_variant 0.38
rpoC 765541 c.2172C>G synonymous_variant 0.18
rpoC 765553 c.2184C>T synonymous_variant 0.15
rpoC 765556 c.2187G>C synonymous_variant 0.14
rpoC 765562 c.2193G>C synonymous_variant 0.29
rpoC 765578 c.2209C>T synonymous_variant 0.39
rpoC 765622 p.Glu751Asp missense_variant 0.35
rpoC 765625 c.2256C>T synonymous_variant 0.29
rpoC 765628 c.2259G>C synonymous_variant 0.31
rpoC 765658 c.2289C>T synonymous_variant 0.38
rpoC 765670 c.2301C>T synonymous_variant 0.22
rpoC 765796 c.2427C>T synonymous_variant 0.29
rpoC 765814 c.2445A>G synonymous_variant 0.44
rpoC 765826 c.2457T>C synonymous_variant 0.44
rpoC 765835 c.2466C>T synonymous_variant 0.38
rpoC 765883 c.2514C>G synonymous_variant 0.67
rpoC 765886 c.2517C>G synonymous_variant 0.67
rpoC 765892 c.2523T>C synonymous_variant 0.64
rpoC 765904 c.2535C>T synonymous_variant 0.67
rpoC 765934 c.2565C>T synonymous_variant 0.33
rpoC 765952 c.2583G>T synonymous_variant 0.23
rpoC 766607 p.Ile1080Leu missense_variant 0.2
rpoC 766630 c.3261G>T synonymous_variant 0.18
rpoC 767098 c.3729T>C synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775981 p.Leu834Met missense_variant 0.14
mmpL5 775997 c.2484T>C synonymous_variant 0.17
mmpL5 776000 p.Leu827Ile missense_variant 0.17
mmpL5 776009 c.2472A>G synonymous_variant 0.14
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781715 c.156T>C synonymous_variant 0.25
rpsL 781718 c.159C>G synonymous_variant 0.25
rpsL 781721 c.162C>T synonymous_variant 0.25
rpsL 781728 c.169T>C synonymous_variant 0.25
rpsL 781736 c.177T>C synonymous_variant 0.25
rpsL 781751 c.192G>C synonymous_variant 0.22
rpsL 781754 c.195G>C synonymous_variant 0.22
rpsL 781760 c.201T>C synonymous_variant 0.22
rpsL 781766 c.207C>T synonymous_variant 0.2
rpsL 781772 c.213C>G synonymous_variant 0.18
rplC 800612 c.-197A>G upstream_gene_variant 0.23
rplC 800618 c.-191T>C upstream_gene_variant 0.25
rplC 800621 c.-188G>A upstream_gene_variant 0.18
rplC 800627 c.-182C>T upstream_gene_variant 0.23
rplC 800648 c.-161A>G upstream_gene_variant 0.29
rplC 800654 c.-155T>C upstream_gene_variant 0.28
rplC 800693 c.-116A>G upstream_gene_variant 0.42
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.36
rplC 800714 c.-95C>T upstream_gene_variant 0.33
rplC 800715 c.-94A>C upstream_gene_variant 0.33
rplC 800723 c.-86C>G upstream_gene_variant 0.31
rplC 800744 c.-65G>C upstream_gene_variant 0.27
rplC 800745 c.-64_-62delCTCinsTTG upstream_gene_variant 0.27
rplC 800759 c.-50C>T upstream_gene_variant 0.33
rplC 800762 c.-47T>G upstream_gene_variant 0.33
rplC 800829 c.21C>G synonymous_variant 0.17
rplC 800844 c.36T>C synonymous_variant 0.15
rplC 800856 c.48A>G synonymous_variant 0.15
rplC 800865 c.57A>G synonymous_variant 0.14
rplC 800901 c.93C>G synonymous_variant 0.17
rplC 801222 c.414T>C synonymous_variant 0.29
rplC 801228 c.420T>C synonymous_variant 0.22
rplC 801231 c.423C>T synonymous_variant 0.22
rplC 801246 c.438C>T synonymous_variant 0.27
rplC 801255 c.447C>A synonymous_variant 0.17
rplC 801309 c.501C>G synonymous_variant 0.25
rplC 801312 c.504G>C synonymous_variant 0.29
rplC 801324 c.516T>C synonymous_variant 0.33
rplC 801330 c.522G>T synonymous_variant 0.33
rplC 801333 c.525G>C synonymous_variant 0.33
rplC 801372 c.564G>A synonymous_variant 0.27
rplC 801385 c.577C>T synonymous_variant 0.25
rplC 801402 c.594T>C synonymous_variant 0.17
rplC 801405 c.597T>C synonymous_variant 0.15
rplC 801423 c.615G>C synonymous_variant 0.18
rplC 801426 c.618C>T synonymous_variant 0.18
rplC 801427 p.Met207Val missense_variant 0.18
rplC 801437 p.Ser210Thr missense_variant 0.17
rplC 801461 c.653G>A splice_region_variant&stop_retained_variant 0.2
fbiC 1303449 c.519C>T synonymous_variant 0.15
fbiC 1303464 c.534A>G synonymous_variant 0.15
fbiC 1303470 c.540T>G synonymous_variant 0.15
fbiC 1303480 p.Gln184Glu missense_variant 0.15
fbiC 1303506 c.576C>T synonymous_variant 0.24
fbiC 1303512 c.582T>C synonymous_variant 0.24
fbiC 1303534 p.Ser202Ala missense_variant 0.32
fbiC 1303538 p.Arg203Leu missense_variant 0.26
fbiC 1303545 c.615A>G synonymous_variant 0.24
fbiC 1303575 c.645G>C synonymous_variant 0.32
fbiC 1303578 c.648G>A synonymous_variant 0.32
fbiC 1303584 c.654C>G synonymous_variant 0.35
fbiC 1303596 c.666G>C synonymous_variant 0.29
fbiC 1303605 c.675C>G synonymous_variant 0.3
fbiC 1303608 c.678G>A synonymous_variant 0.3
fbiC 1303614 c.684C>T synonymous_variant 0.25
fbiC 1303617 c.687C>G synonymous_variant 0.22
fbiC 1303620 c.690C>T synonymous_variant 0.3
fbiC 1303629 c.699C>T synonymous_variant 0.38
fbiC 1303632 c.702T>G synonymous_variant 0.33
fbiC 1303659 c.729T>C synonymous_variant 0.33
fbiC 1303661 p.Val244Ala missense_variant 0.29
fbiC 1303674 c.744C>G synonymous_variant 0.29
fbiC 1303686 c.756C>G synonymous_variant 0.25
fbiC 1303704 c.774T>C synonymous_variant 0.18
fbiC 1303708 c.778T>C synonymous_variant 0.18
fbiC 1304472 c.1542T>C synonymous_variant 0.22
fbiC 1304478 c.1548G>C synonymous_variant 0.2
fbiC 1304481 c.1551T>G synonymous_variant 0.2
fbiC 1304496 c.1566T>A synonymous_variant 0.2
fbiC 1304499 c.1569T>G synonymous_variant 0.18
fbiC 1304502 c.1572G>C synonymous_variant 0.25
fbiC 1304526 c.1596T>G synonymous_variant 0.23
fbiC 1304532 c.1602G>C synonymous_variant 0.25
fbiC 1304533 c.1603T>C synonymous_variant 0.25
fbiC 1304541 c.1611C>G synonymous_variant 0.27
fbiC 1304544 c.1614T>C synonymous_variant 0.27
fbiC 1304546 p.Val539Ala missense_variant 0.33
fbiC 1304559 p.Glu543Asp missense_variant 0.31
fbiC 1304565 c.1635C>G synonymous_variant 0.25
fbiC 1304568 c.1638T>C synonymous_variant 0.25
fbiC 1304574 c.1644C>G synonymous_variant 0.15
fbiC 1304580 c.1650T>C synonymous_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.27
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.4
rrs 1472031 n.186G>T non_coding_transcript_exon_variant 0.38
rrs 1472033 n.188A>G non_coding_transcript_exon_variant 0.38
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 0.38
rrs 1472040 n.195T>C non_coding_transcript_exon_variant 0.38
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.25
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.25
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.27
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.84
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.87
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 0.87
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.85
rrs 1472128 n.283G>A non_coding_transcript_exon_variant 0.85
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.86
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.92
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.94
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.94
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.96
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.95
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.94
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.93
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.92
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.92
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.91
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.93
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 0.9
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 0.89
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.9
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.81
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.78
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.59
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 0.42
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.5
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.77
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 0.83
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.83
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.77
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.6
rrs 1472412 n.567A>C non_coding_transcript_exon_variant 0.54
rrs 1472415 n.570T>G non_coding_transcript_exon_variant 0.54
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.36
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.7
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.72
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.85
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.39
rrs 1472543 n.699_700delCA non_coding_transcript_exon_variant 0.9
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.96
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.96
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.96
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.97
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.97
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.97
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.98
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.98
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.98
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.98
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.57
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.78
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.48
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.96
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.96
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.98
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.98
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.97
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.97
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.96
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.95
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.44
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.43
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.4
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.4
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.22
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.25
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.42
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.42
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.42
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.42
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.5
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.5
rrs 1473054 n.1209C>T non_coding_transcript_exon_variant 0.44
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.44
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.44
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.42
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.42
rrs 1473080 n.1235C>A non_coding_transcript_exon_variant 0.36
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.33
rrs 1473083 n.1238G>A non_coding_transcript_exon_variant 0.31
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.38
rrs 1473131 n.1286G>T non_coding_transcript_exon_variant 0.23
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.93
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 0.94
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.94
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.96
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.94
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.96
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 0.96
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.96
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 0.97
rrs 1473191 n.1346C>T non_coding_transcript_exon_variant 0.97
rrs 1473206 n.1361G>A non_coding_transcript_exon_variant 0.98
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.98
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.84
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.82
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.82
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.82
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.84
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.84
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.64
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.33
rrl 1473797 n.140G>T non_coding_transcript_exon_variant 0.25
rrl 1474061 n.404T>C non_coding_transcript_exon_variant 0.25
rrl 1474089 n.432C>T non_coding_transcript_exon_variant 0.44
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.44
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 0.5
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.5
rrl 1474110 n.453A>C non_coding_transcript_exon_variant 0.44
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.44
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.44
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.57
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.29
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.33
rrl 1474433 n.776G>T non_coding_transcript_exon_variant 0.29
rrl 1474435 n.779_783delTGAAT non_coding_transcript_exon_variant 0.29
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.22
rrl 1474839 n.1182C>T non_coding_transcript_exon_variant 0.81
rrl 1474842 n.1185G>T non_coding_transcript_exon_variant 0.78
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.83
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.86
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.86
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.86
rrl 1474892 n.1235G>A non_coding_transcript_exon_variant 0.91
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.91
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 0.91
rrl 1474903 n.1246T>A non_coding_transcript_exon_variant 0.91
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.91
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 0.97
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 0.97
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.67
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.29
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.29
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.3
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.33
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.4
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.5
rrl 1475453 n.1796T>A non_coding_transcript_exon_variant 0.67
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 0.33
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.33
rrl 1475487 n.1830C>T non_coding_transcript_exon_variant 0.33
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.33
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.4
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.56
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 0.71
rrl 1475605 n.1948A>T non_coding_transcript_exon_variant 0.71
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.71
rrl 1475617 n.1960C>G non_coding_transcript_exon_variant 0.62
rrl 1475625 n.1968G>C non_coding_transcript_exon_variant 0.5
rrl 1475637 n.1980T>A non_coding_transcript_exon_variant 0.5
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.43
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.62
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.62
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.64
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.62
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 0.6
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 0.57
rrl 1475877 n.2220C>T non_coding_transcript_exon_variant 0.35
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.18
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.22
rrl 1475999 n.2342G>T non_coding_transcript_exon_variant 0.25
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.33
rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 0.33
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.33
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.33
rrl 1476045 n.2388G>C non_coding_transcript_exon_variant 0.3
rrl 1476047 n.2390G>A non_coding_transcript_exon_variant 0.27
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.23
rrl 1476077 n.2420T>C non_coding_transcript_exon_variant 0.17
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.18
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.18
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.18
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.2
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.17
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.5
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.47
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.47
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.29
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.29
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.55
rrl 1476234 n.2577G>A non_coding_transcript_exon_variant 0.5
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.2
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.62
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.62
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.64
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.64
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.64
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.53
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.53
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.64
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.95
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.97
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.97
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.98
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.98
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.97
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.98
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.99
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.99
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.99
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.98
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.97
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.96
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.91
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.89
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.89
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.89
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.89
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.87
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.87
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.87
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.87
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.87
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.87
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.88
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.84
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.83
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.72
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.6
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.4
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.38
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.2
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.2
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.2
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.2
inhA 1673475 c.-727A>C upstream_gene_variant 0.5
inhA 1673499 c.-703T>C upstream_gene_variant 0.6
inhA 1673505 c.-697A>T upstream_gene_variant 0.6
inhA 1673517 c.-685G>C upstream_gene_variant 0.6
inhA 1673524 c.-678C>T upstream_gene_variant 0.6
inhA 1673535 c.-667A>G upstream_gene_variant 0.5
inhA 1673547 c.-655T>C upstream_gene_variant 0.5
inhA 1673565 c.-637G>C upstream_gene_variant 0.6
rpsA 1833532 c.-10A>C upstream_gene_variant 0.2
rpsA 1833568 c.27G>C synonymous_variant 0.22
rpsA 1833595 c.54T>C synonymous_variant 0.17
rpsA 1833613 c.72C>A synonymous_variant 0.2
rpsA 1833619 c.78A>C synonymous_variant 0.25
rpsA 1833661 c.120A>G synonymous_variant 0.43
rpsA 1833667 c.126C>G synonymous_variant 0.4
rpsA 1833703 c.162C>T synonymous_variant 0.46
rpsA 1833724 c.183C>G synonymous_variant 0.33
rpsA 1833727 c.186G>C synonymous_variant 0.33
rpsA 1833745 c.204G>C synonymous_variant 0.35
rpsA 1833760 c.219C>T synonymous_variant 0.31
rpsA 1833790 c.249T>C synonymous_variant 0.3
rpsA 1833793 c.252C>T synonymous_variant 0.33
rpsA 1833802 c.261A>G synonymous_variant 0.36
rpsA 1833808 c.267G>C synonymous_variant 0.42
rpsA 1833811 c.270G>T synonymous_variant 0.38
rpsA 1833832 c.291G>A synonymous_variant 0.2
rpsA 1833838 c.297G>C synonymous_variant 0.18
rpsA 1833841 c.300C>G synonymous_variant 0.18
rpsA 1833847 c.306C>G synonymous_variant 0.31
rpsA 1833856 c.315A>G synonymous_variant 0.42
rpsA 1833859 c.318C>T synonymous_variant 0.42
rpsA 1833874 c.333T>C synonymous_variant 0.43
rpsA 1833895 c.354G>C synonymous_variant 0.38
rpsA 1833928 c.387G>C synonymous_variant 0.4
rpsA 1833949 c.408T>C synonymous_variant 0.43
rpsA 1833970 c.429G>A synonymous_variant 0.5
rpsA 1833979 c.438T>C synonymous_variant 0.5
rpsA 1834297 c.756C>T synonymous_variant 0.29
rpsA 1834303 c.762T>G synonymous_variant 0.33
rpsA 1834336 c.795C>G synonymous_variant 0.2
rpsA 1834348 c.807T>C synonymous_variant 0.27
rpsA 1834423 c.882G>T synonymous_variant 0.25
rpsA 1834451 c.910T>C synonymous_variant 0.4
rpsA 1834456 c.915T>G synonymous_variant 0.5
rpsA 1834465 c.924T>C synonymous_variant 0.67
rpsA 1834468 c.927A>G synonymous_variant 0.67
rpsA 1834477 c.936C>T synonymous_variant 0.67
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834510 c.969C>T synonymous_variant 0.67
rpsA 1834555 c.1014T>G synonymous_variant 0.4
rpsA 1834603 c.1062G>A synonymous_variant 0.33
rpsA 1834609 c.1068T>C synonymous_variant 0.33
rpsA 1834612 c.1071G>A synonymous_variant 0.33
rpsA 1834633 c.1092A>G synonymous_variant 0.38
rpsA 1834639 c.1098T>C synonymous_variant 0.44
rpsA 1834654 c.1113G>A synonymous_variant 0.33
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155017 c.1095G>C synonymous_variant 0.4
katG 2155026 c.1086C>G synonymous_variant 0.33
katG 2155047 c.1065C>G synonymous_variant 0.31
katG 2155054 p.Tyr353Phe missense_variant 0.31
katG 2155056 c.1056A>G synonymous_variant 0.29
katG 2155062 c.1050T>C synonymous_variant 0.31
katG 2155068 c.1044T>G synonymous_variant 0.33
katG 2155071 c.1041T>G synonymous_variant 0.33
katG 2155080 c.1032G>C synonymous_variant 0.4
katG 2155083 c.1029G>C synonymous_variant 0.4
katG 2155086 c.1026G>A synonymous_variant 0.4
PPE35 2168611 p.Asn668Asp missense_variant 0.18
PPE35 2169917 c.696T>C synonymous_variant 0.27
PPE35 2170790 c.-178G>T upstream_gene_variant 1.0
Rv1979c 2222818 p.Thr116Arg missense_variant 0.5
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518025 c.-90G>C upstream_gene_variant 0.13
kasA 2518162 c.48G>A synonymous_variant 0.14
kasA 2518169 p.Val19Leu missense_variant 0.15
kasA 2518172 p.Thr20Ala missense_variant 0.15
kasA 2518190 p.Ser26Ala missense_variant 0.15
kasA 2518199 p.Ile29Val missense_variant 0.14
kasA 2518219 c.105T>C synonymous_variant 0.27
kasA 2518220 c.106C>T synonymous_variant 0.2
kasA 2518245 p.His44Arg missense_variant 0.22
kasA 2518248 p.Ala45Val missense_variant 0.2
kasA 2518825 c.711T>C synonymous_variant 0.18
kasA 2518840 c.726C>G synonymous_variant 0.17
kasA 2518864 c.750G>C synonymous_variant 0.17
pepQ 2859723 c.696T>C synonymous_variant 0.29
pepQ 2859732 c.687C>T synonymous_variant 0.38
pepQ 2859735 c.684G>C synonymous_variant 0.38
pepQ 2859765 c.654G>C synonymous_variant 0.43
pepQ 2859771 c.648T>C synonymous_variant 0.43
pepQ 2859774 c.645C>T synonymous_variant 0.4
pepQ 2859778 p.Val214Asp missense_variant 0.4
pepQ 2859780 p.Gln213Ala missense_variant 0.4
pepQ 2859783 c.636G>C synonymous_variant 0.33
pepQ 2859791 p.Ala210Ser missense_variant 0.33
Rv2752c 3065040 c.1150_1152delCTCinsTTG synonymous_variant 0.25
Rv2752c 3065049 c.1143G>A synonymous_variant 0.22
Rv2752c 3065055 c.1137T>G synonymous_variant 0.25
Rv2752c 3065064 c.1128G>C synonymous_variant 0.25
Rv2752c 3065397 c.795G>C synonymous_variant 0.25
Rv2752c 3065412 c.780G>C synonymous_variant 0.22
Rv2752c 3065418 c.774A>G synonymous_variant 0.22
Rv2752c 3065424 c.768C>G synonymous_variant 0.25
Rv2752c 3065430 c.762A>G synonymous_variant 0.22
Rv2752c 3065439 c.753C>G synonymous_variant 0.29
Rv2752c 3065442 c.750T>C synonymous_variant 0.33
Rv2752c 3065451 c.741G>A synonymous_variant 0.29
Rv2752c 3065457 c.735A>G synonymous_variant 0.29
Rv2752c 3065463 c.729T>C synonymous_variant 0.5
Rv2752c 3065466 c.726G>C synonymous_variant 0.5
thyA 3073794 c.678A>G synonymous_variant 0.18
thyA 3073818 p.Leu218Ile missense_variant 0.2
thyA 3073824 c.648A>C synonymous_variant 0.22
thyA 3073827 c.645A>G synonymous_variant 0.22
thyA 3073830 p.Glu214Asp missense_variant 0.25
thyA 3073836 c.636C>T synonymous_variant 0.25
thyA 3073839 c.633T>C synonymous_variant 0.29
thyA 3073863 c.609T>C synonymous_variant 0.25
fprA 3473812 c.-195G>A upstream_gene_variant 0.25
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3642662 c.1128C>G synonymous_variant 0.2
fbiB 3642668 c.1134A>T synonymous_variant 0.18
fbiB 3642677 c.1143A>G synonymous_variant 0.17
fbiB 3642680 c.1146A>G synonymous_variant 0.17
fbiB 3642683 c.1149C>G synonymous_variant 0.18
fbiB 3642695 c.1161G>C synonymous_variant 0.25
fbiB 3642707 c.1173C>G synonymous_variant 0.18
fbiB 3642710 c.1176G>C synonymous_variant 0.2
fbiB 3642711 p.Leu393Val missense_variant 0.22
alr 3840997 c.424T>C synonymous_variant 0.16
alr 3841001 c.420A>G synonymous_variant 0.17
alr 3841013 c.408C>G synonymous_variant 0.17
alr 3841018 p.Leu135Val missense_variant 0.19
alr 3841028 c.393G>C synonymous_variant 0.19
alr 3841033 p.Val130Ile missense_variant 0.19
alr 3841036 p.Gln129Glu missense_variant 0.19
alr 3841037 c.384G>C synonymous_variant 0.19
alr 3841055 c.366C>G synonymous_variant 0.29
alr 3841079 c.342T>C synonymous_variant 0.27
alr 3841088 c.333C>T synonymous_variant 0.3
rpoA 3877515 c.993G>C synonymous_variant 0.13
rpoA 3877557 c.951C>G synonymous_variant 0.22
rpoA 3877587 c.921A>C synonymous_variant 0.43
rpoA 3877613 p.Ile299Val missense_variant 0.5
rpoA 3877737 c.771G>C synonymous_variant 0.22
rpoA 3877743 c.765T>C synonymous_variant 0.3
rpoA 3877758 c.750G>C synonymous_variant 0.5
rpoA 3877764 c.744C>G synonymous_variant 0.5
rpoA 3877770 c.738A>G synonymous_variant 0.56
rpoA 3877776 c.732T>C synonymous_variant 0.62
rpoA 3877782 c.726T>C synonymous_variant 0.56
rpoA 3877815 c.693C>T synonymous_variant 0.33
rpoA 3877839 c.669G>C synonymous_variant 0.29
rpoA 3877887 c.621G>C synonymous_variant 0.29
rpoA 3877900 p.Ser203Thr missense_variant 0.33
rpoA 3877905 c.603A>G synonymous_variant 0.33
rpoA 3877908 p.Asn200Ser missense_variant 0.33
rpoA 3877920 c.588G>C synonymous_variant 0.36
rpoA 3877962 c.546G>T synonymous_variant 0.43
rpoA 3877968 c.540C>G synonymous_variant 0.36
rpoA 3877989 c.519A>G synonymous_variant 0.33
rpoA 3878001 c.507A>G synonymous_variant 0.27
rpoA 3878022 c.486T>C synonymous_variant 0.22
rpoA 3878025 c.483C>T synonymous_variant 0.22
rpoA 3878028 c.480G>C synonymous_variant 0.25
rpoA 3878031 c.477T>C synonymous_variant 0.25
rpoA 3878043 c.465G>C synonymous_variant 0.33
rpoA 3878046 c.462T>G synonymous_variant 0.33
rpoA 3878055 c.453A>G synonymous_variant 0.23
rpoA 3878061 c.447G>C synonymous_variant 0.2
rpoA 3878067 c.441C>G synonymous_variant 0.2
rpoA 3878070 c.438T>C synonymous_variant 0.18
rpoA 3878082 c.426T>C synonymous_variant 0.18
rpoA 3878097 c.411G>A synonymous_variant 0.3
rpoA 3878103 c.405A>G synonymous_variant 0.2
rpoA 3878106 c.402G>C synonymous_variant 0.2
rpoA 3878118 c.390T>C synonymous_variant 0.22
rpoA 3878166 c.342C>G synonymous_variant 0.29
rpoA 3878169 c.339G>C synonymous_variant 0.33
rpoA 3878217 c.291A>G synonymous_variant 0.29
rpoA 3878229 c.279C>G synonymous_variant 0.29
rpoA 3878247 c.261G>C synonymous_variant 0.25
rpoA 3878415 c.93C>T synonymous_variant 0.22
clpC1 4038425 c.2280C>A synonymous_variant 0.17
clpC1 4038444 p.Ala754Lys missense_variant 0.17
clpC1 4038446 c.2259T>C synonymous_variant 0.18
clpC1 4038456 p.Val750Glu missense_variant 0.26
clpC1 4038486 p.Gly740Asn missense_variant 0.23
clpC1 4038491 c.2214C>T synonymous_variant 0.23
clpC1 4038502 p.Ile735Val missense_variant 0.25
clpC1 4038508 c.2197C>T synonymous_variant 0.23
clpC1 4038518 c.2187G>T synonymous_variant 0.23
clpC1 4038530 p.Glu725Asp missense_variant 0.17
clpC1 4038537 p.Thr723Ser missense_variant 0.17
clpC1 4038539 c.2166G>C synonymous_variant 0.17
clpC1 4038740 c.1965G>C synonymous_variant 0.24
clpC1 4038749 c.1956C>T synonymous_variant 0.24
clpC1 4038773 c.1932T>C synonymous_variant 0.28
clpC1 4038782 c.1923G>T synonymous_variant 0.29
clpC1 4038790 c.1915C>T synonymous_variant 0.29
clpC1 4038809 c.1896G>A synonymous_variant 0.33
clpC1 4038812 c.1893T>C synonymous_variant 0.33
clpC1 4038875 c.1830C>G synonymous_variant 0.33
clpC1 4038878 c.1827A>G synonymous_variant 0.33
clpC1 4038893 c.1812C>T synonymous_variant 0.22
clpC1 4038923 c.1782A>G synonymous_variant 0.18
clpC1 4038953 c.1752A>G synonymous_variant 0.15
clpC1 4038956 c.1749T>C synonymous_variant 0.15
clpC1 4038971 c.1734T>C synonymous_variant 0.14
clpC1 4038989 c.1716T>C synonymous_variant 0.15
clpC1 4038997 c.1708T>C synonymous_variant 0.15
clpC1 4039004 c.1701C>G synonymous_variant 0.21
clpC1 4039022 c.1683A>G synonymous_variant 0.2
clpC1 4039067 c.1638G>C synonymous_variant 0.4
clpC1 4039085 c.1620A>G synonymous_variant 0.4
clpC1 4039097 c.1608G>C synonymous_variant 0.4
clpC1 4039169 p.Glu512Asp missense_variant 0.18
clpC1 4039172 c.1533A>G synonymous_variant 0.18
clpC1 4039178 c.1527G>C synonymous_variant 0.27
clpC1 4039183 c.1522T>C synonymous_variant 0.27
clpC1 4039190 c.1515C>G synonymous_variant 0.33
clpC1 4039193 c.1512C>G synonymous_variant 0.33
clpC1 4039223 c.1482C>T synonymous_variant 0.44
clpC1 4039226 c.1479T>C synonymous_variant 0.38
clpC1 4039238 c.1467C>T synonymous_variant 0.43
clpC1 4039243 c.1462C>T synonymous_variant 0.5
clpC1 4039259 c.1446G>A synonymous_variant 0.29
clpC1 4039262 c.1443C>T synonymous_variant 0.29
clpC1 4039361 c.1344C>A synonymous_variant 0.18
clpC1 4039382 c.1323C>T synonymous_variant 0.22
clpC1 4039391 c.1314T>G synonymous_variant 0.29
clpC1 4039409 c.1296T>C synonymous_variant 0.5
clpC1 4039412 c.1293T>A synonymous_variant 0.5
clpC1 4039415 p.Glu430Asp missense_variant 0.5
clpC1 4039430 c.1275T>C synonymous_variant 0.67
clpC1 4039481 c.1224T>G synonymous_variant 0.75
clpC1 4039484 c.1221T>G synonymous_variant 0.6
clpC1 4039496 c.1209C>T synonymous_variant 0.5
clpC1 4039508 c.1197G>C synonymous_variant 0.45
clpC1 4039526 c.1179G>A synonymous_variant 0.38
clpC1 4039532 c.1173C>T synonymous_variant 0.38
clpC1 4039553 c.1152C>A synonymous_variant 0.33
clpC1 4039562 c.1143C>G synonymous_variant 0.3
clpC1 4039565 c.1140G>C synonymous_variant 0.27
clpC1 4039576 p.Ala377Ser missense_variant 0.17
clpC1 4039850 c.855T>C synonymous_variant 0.14
clpC1 4039865 c.840T>C synonymous_variant 0.17
clpC1 4039880 c.825G>A synonymous_variant 0.18
clpC1 4039898 c.807C>G synonymous_variant 0.23
clpC1 4039931 c.774T>C synonymous_variant 0.4
clpC1 4039937 c.768G>C synonymous_variant 0.33
clpC1 4039943 c.762G>C synonymous_variant 0.29
clpC1 4039946 c.759A>C synonymous_variant 0.27
clpC1 4039949 c.756G>C synonymous_variant 0.27
clpC1 4039952 c.753T>C synonymous_variant 0.29
clpC1 4039955 c.750G>T synonymous_variant 0.29
clpC1 4039958 c.747G>C synonymous_variant 0.29
clpC1 4039964 c.741C>T synonymous_variant 0.29
clpC1 4040000 c.705C>T synonymous_variant 0.33
clpC1 4040309 c.396C>T synonymous_variant 0.33
clpC1 4040342 c.363C>G synonymous_variant 0.18
clpC1 4040348 c.357G>C synonymous_variant 0.18
clpC1 4040354 c.351A>G synonymous_variant 0.18
clpC1 4040357 c.348T>C synonymous_variant 0.18
clpC1 4040363 c.342A>C synonymous_variant 0.18
clpC1 4040369 c.336C>G synonymous_variant 0.2
clpC1 4040471 c.234T>C synonymous_variant 0.33
clpC1 4040480 c.225T>C synonymous_variant 0.29
clpC1 4040486 c.219G>C synonymous_variant 0.3
clpC1 4040495 c.210C>A synonymous_variant 0.2
clpC1 4040522 c.183T>C synonymous_variant 0.25
clpC1 4040525 c.180C>T synonymous_variant 0.2
clpC1 4040528 c.177G>C synonymous_variant 0.2
clpC1 4040531 c.174T>C synonymous_variant 0.2
clpC1 4040534 c.171A>G synonymous_variant 0.2
clpC1 4040537 c.168G>C synonymous_variant 0.17
clpC1 4040551 c.154T>C synonymous_variant 0.14
clpC1 4040561 c.144A>G synonymous_variant 0.14
clpC1 4040654 c.51G>A synonymous_variant 0.5
clpC1 4040657 c.48T>G synonymous_variant 0.5
clpC1 4040662 c.43C>T synonymous_variant 0.67
clpC1 4040669 c.36C>G synonymous_variant 0.5
clpC1 4040695 c.10C>A synonymous_variant 0.5
embC 4240726 c.864G>C synonymous_variant 0.22
embC 4240729 c.867C>G synonymous_variant 0.22
embC 4240747 c.885C>T synonymous_variant 0.18
embC 4240759 c.897C>G synonymous_variant 0.22
embC 4240765 c.903C>G synonymous_variant 0.38
embC 4240783 c.921G>C synonymous_variant 0.5
embC 4240789 c.927T>C synonymous_variant 0.43
embC 4240795 c.933C>G synonymous_variant 0.4
embC 4241071 c.1209C>G synonymous_variant 0.25
embC 4241086 c.1224G>C synonymous_variant 0.17
embC 4241101 c.1239G>C synonymous_variant 0.17
embC 4241121 p.Ser420Asn missense_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4247470 c.957T>C synonymous_variant 0.22
embB 4247497 c.984T>C synonymous_variant 0.3
embB 4247500 c.987C>G synonymous_variant 0.27
embB 4247506 c.993C>G synonymous_variant 0.27
embB 4247512 c.999T>C synonymous_variant 0.3
embB 4247527 c.1014G>C synonymous_variant 0.33
embB 4247539 c.1026T>C synonymous_variant 0.25
embB 4247550 p.Ala346Asp missense_variant 0.29
embB 4247554 c.1041T>C synonymous_variant 0.27
embB 4247566 c.1053C>G synonymous_variant 0.21
embB 4247572 c.1059A>C synonymous_variant 0.23
embB 4247590 c.1077A>G synonymous_variant 0.18
embB 4247629 c.1116C>G synonymous_variant 0.15
embB 4248035 p.Val508Ile missense_variant 0.4
embB 4248040 c.1527C>G synonymous_variant 0.33
embB 4248041 p.Ala510Thr missense_variant 0.33
embB 4248044 p.Lys511Ala missense_variant 0.33
embB 4248055 c.1542G>C synonymous_variant 0.33
embB 4248064 c.1551G>C synonymous_variant 0.29
embB 4248070 c.1557T>C synonymous_variant 0.25
embB 4248085 c.1572T>C synonymous_variant 0.29
embB 4248190 c.1677G>C synonymous_variant 0.25
embB 4248200 p.Ile563Val missense_variant 0.43
embB 4248206 p.Ser565Gly missense_variant 0.38
embB 4248211 c.1698G>A synonymous_variant 0.38
embB 4248220 c.1707A>C synonymous_variant 0.38
embB 4248241 c.1728C>T synonymous_variant 0.38
embB 4248277 c.1764G>C synonymous_variant 0.43
ethA 4328329 c.-856C>G upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0