lineage | Count |
---|---|
94 | |
lineage4.3.4.2.1 | 1 |
lineage2.2.1.1 | 1 |
lineage2.2.1 | 8 |
lineage4.4.1.1 | 1 |
lineage4.1.2.1 | 5 |
La2 | 1 |
lineage4 | 7 |
lineage4.1.1.3 | 2 |
lineage4.9 | 6 |
lineage4.8 | 3 |
lineage4.1.3 | 2 |
La1 | 1 |
lineage3 | 2 |
lineage3.1.2 | 1 |
lineage4.8;La3 | 2 |
La1.2 | 1 |
lineage1.1.2 | 2 |
lineage4.3.2.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.6.1.1 | 1 |
lineage3.1 | 2 |
lineage2.1 | 2 |
lineage1.1.1 | 1 |
lineage4.5 | 1 |
lineage2 | 1 |
lineage4.1.1 | 1 |
lineage4.3.3 | 1 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.7 | 1 |
La1.8.1 | 1 |
spoligotype | Count |
---|---|
None | 159 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045555 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR6046644 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR7535086 | Other | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | SRR7496509 | Other | None | ERR323043 | HR-TB | None | ERR323039 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323053 | HR-TB | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1035157 | Other | lineage4.9 | None | ERR067681 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR3797036 | HR-TB | None | ERR11049020 | Other | lineage4.8 | None | ERR133986 | HR-TB | None | ERR3439432 | Other | None | ERR3797014 | Other | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR4407463 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4798504 | Other | lineage3 | None | ERR4798406 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6198317 | Other | La1.2 | None | ERR702406 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736874 | HR-TB | None | ERR736867 | HR-TB | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR9117709 | HR-TB | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786604 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR987722 | HR-TB | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | SRR1172857 | MDR-TB | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1173629 | Other | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1172951 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1174897 | HR-TB | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR15368973 | Other | None | SRR19303884 | HR-TB | None | SRR17832802 | HR-TB | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR19304036 | HR-TB | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | ERR176793 | Other | lineage4.1.1 | None | ERR11081258 | Other | lineage4.8 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR158583 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR176740 | HR-TB | None | SRR3675234 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675311 | Other | None | ERR2041702 | MDR-TB | lineage4.7 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675502 | Other | None | SRR3675572 | Other | None | ERR4816151 | Other | lineage4.8 | None | SRR3675550 | Other | None | ERR2027263 | Other | lineage4 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3742665 | HR-TB | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | SRR3675571 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR1035162 | Other | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5341418 | Other | None |
---|