EBG00000313339 - n.1235G>A
Drug resistance types
36 Sensitive
10 RR-TB
20 HR-TB
19 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
141 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 11 |
| lineage4.1.2.1 | 14 |
| lineage4.8.2 | 1 |
| lineage2.2.1 | 29 |
| lineage3.1.1 | 5 |
| 8 | |
| lineage1.1.1.1 | 1 |
| lineage4.1.2 | 3 |
| lineage1.2.1.2.1 | 4 |
| lineage4.1.1 | 3 |
| lineage4.3.4.2.1 | 6 |
| lineage4.7 | 3 |
| lineage4 | 7 |
| lineage4.2.1.1 | 2 |
| lineage4.3.4.2 | 2 |
| lineage2.2.1.1 | 6 |
| lineage2.2 | 1 |
| lineage4;lineage2.2.1 | 1 |
| lineage4.3.1 | 1 |
| lineage4.3.2.1 | 5 |
| lineage4.2.1 | 3 |
| lineage4.3.3 | 8 |
| La1.8.1 | 5 |
| lineage1.1.1 | 1 |
| lineage4.8;lineage4.2.1 | 1 |
| lineage4.8 | 13 |
| lineage4.6.1.2 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.9 | 40 |
| lineage4.1.4 | 1 |
| lineage4.1.1.3 | 3 |
| La1.2 | 5 |
| La1.8.2 | 2 |
| La1.3 | 1 |
| lineage4.3.2 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.6.1.1 | 1 |
| lineage1.2.2.1 | 3 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.2.2.2 | 5 |
| lineage4.4.1.1.1 | 2 |
| La1.6 | 1 |
| lineage4.8.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.3.4.1 | 1 |
| lineage3.1.2 | 2 |
| lineage4.9.1 | 1 |
| lineage1.1.3 | 1 |
| La2 | 1 |
| lineage4.6.1 | 1 |
| lineage4.2 | 1 |
| lineage1.2.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4;lineage3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.1.1.3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 235 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046607 | Other | lineage3 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046710 | Other | lineage4.8.2 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046716 | Other | lineage3 | gb | SRR6046766 | Other | lineage3.1.1 | None | SRR6046824 | HR-TB | None | SRR6046815 | Other | lineage3 | None | SRR6397771 | Other | lineage1.1.1.1 | None | SRR6389899 | Other | lineage4.1.2 | None | SRR6397406 | Other | lineage4.1.2.1 | None | SRR6397548 | HR-TB | lineage1.2.1.2.1 | None | SRR6152886 | HR-TB | lineage3 | None | SRR6397568 | Other | lineage4.1.1 | None | SRR6397575 | Other | lineage4.3.4.2.1 | None | SRR6153036 | Other | None | SRR6397770 | Other | lineage4.7 | None | SRR6397396 | HR-TB | lineage1.2.1.2.1 | None | SRR6397441 | Other | lineage4 | None | SRR6152854 | Other | lineage4.1.2.1 | None | SRR6397588 | Other | lineage2.2.1 | None | SRR6152979 | Other | lineage4.7 | None | SRR6397642 | RR-TB | None | SRR6152986 | Other | lineage2.2.1 | None | SRR6397727 | Other | lineage4.2.1.1 | None | SRR6511615 | MDR-TB | lineage4.3.4.2 | None | SRR6153268 | Other | lineage2.2.1.1 | ca | SRR6982140 | Other | lineage2.2 | None | SRR6982448 | Sensitive | lineage4;lineage2.2.1 | None | SRR6896539 | MDR-TB | lineage3 | None | SRR6832359 | Sensitive | lineage2.2.1 | None | SRR7131018 | Sensitive | lineage4.3.1 | None | SRR6982275 | Other | lineage2.2.1 | None | SRR6982371 | Sensitive | lineage4.1.1 | None | SRR6982383 | Other | lineage4.3.2.1 | None | SRR6832659 | Other | lineage4.2.1 | None | SRR6982400 | Other | lineage2.2.1 | None | SRR7131220 | Other | lineage4.1.2.1 | None | SRR7131047 | MDR-TB | lineage4.3.3 | None | SRR8073606 | Other | La1.8.1 | None | SRR7131185 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7755767 | Sensitive | lineage4.3.3 | None | SRR7645834 | Other | lineage2.2.1 | None | SRR7755643 | Pre-XDR-TB | lineage4.2.1 | None | SRR8217932 | Other | lineage1.1.1 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR7645808 | HR-TB | lineage4.8;lineage4.2.1 | None | SRR7645827 | Other | lineage4.2.1.1 | None | SRR7645900 | Sensitive | lineage4.8 | None | ERR036194 | Other | lineage4.6.1.2 | None | ERR036215 | Other | lineage4.8 | None | ERR037529 | Other | lineage4.3.4.2.1 | None | ERR036225 | Other | lineage4.3.4.2.1 | None | ERR1034692 | Other | lineage1.2.1.2.1 | None | ERR1023527 | RR-TB | lineage4 | None | ERR3324331 | MDR-TB | lineage4.3.4.1 | None | ERR3283053 | Other | lineage4.9 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR3324328 | MDR-TB | lineage2.2.1 | None | ERR3324347 | Sensitive | lineage4.1.2.1 | None | ERR4132447 | HR-TB | lineage4 | None | ERR3324362 | HR-TB | lineage4.1.2.1 | None | ERR3439229 | Other | La1.8.1 | None | ERR3439235 | Sensitive | lineage4.9 | None | ERR3468697 | Other | La1.8.1 | None | ERR3324355 | HR-TB | lineage4.1.1.3 | None | ERR3324373 | MDR-TB | lineage2.2.1 | None | ERR4769429 | Other | lineage4.9 | None | ERR473337 | Other | lineage4.1.2 | None | ERR4769503 | Other | La1.2 | None | ERR6149874 | Other | La1.8.2 | None | ERR4769546 | Other | La1.3 | None | ERR5865343 | MDR-TB | lineage2.2.1 | None | ERR5987396 | MDR-TB | lineage4.3.2 | None | ERR6140667 | Other | La1.8.2 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR7801321 | Sensitive | lineage4.3.4.2.1 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6201802 | Other | La1.2 | None | ERR6201800 | Other | La1.2 | None | ERR6201843 | Other | La1.2 | None | ERR7801178 | Other | lineage4.3.4.2.1 | None | ERR6198389 | Other | La1.2 | None | ERR736816 | Other | lineage4.9 | None | ERR7801177 | Other | lineage4.3.4.2.1 | None | ERR9117681 | Other | lineage4.3.3 | None | ERR987695 | HR-TB | lineage4.3.4.2 | None | ERR9117728 | Other | lineage3 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117806 | Other | lineage4.8 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987704 | HR-TB | lineage4.6.1.2 | None | SRR1011492 | Sensitive | lineage1.2.2.1 | None | SRR1019130 | Sensitive | lineage4.3.2.1 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR1011489 | Sensitive | lineage2.2.1.1 | None | SRR1049030 | Pre-XDR-TB | lineage4.9 | None | SRR10272559 | Sensitive | lineage4.4.1.1 | None | SRR1049031 | HR-TB | lineage4.9 | None | SRR1049569 | Sensitive | lineage4.2.2.2 | None | SRR1062863 | Sensitive | lineage1.2.2.1 | None | SRR1049568 | Sensitive | lineage4.2.2.2 | None | SRR1062860 | Sensitive | lineage2.2.1.1 | None | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR1062861 | Sensitive | lineage4.1.2 | None | SRR10993936 | Other | La1.6 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349188 | MDR-TB | lineage4.1.2.1 | None | SRR1166110 | Other | lineage2.2.1 | None | SRR1140927 | Sensitive | lineage4.3.2.1 | None | SRR1140942 | Other | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1172816 | MDR-TB | lineage4.3.3 | None | SRR1173025 | Other | lineage4.9 | None | SRR1173040 | MDR-TB | lineage4.4.1.1.1 | None | SRR1173074 | Other | lineage4.9 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR1169017 | Other | lineage2.2.1 | None | SRR1172359 | Pre-XDR-TB | lineage4.2.1 | None | SRR1172808 | Other | lineage4.9 | None | SRR1173768 | Sensitive | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1173705 | Other | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173766 | Sensitive | lineage4.9 | None | SRR1173190 | Sensitive | lineage4.9 | None | SRR1173416 | Other | lineage4.9 | None | SRR1175304 | MDR-TB | lineage4.3.3 | None | SRR1180252 | Other | lineage4.9 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1180982 | Other | lineage2.2.1 | None | SRR1181161 | Other | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1184383 | Other | lineage4.9 | None | SRR1196582 | Other | lineage4.9 | None | SRR11972420 | MDR-TB | lineage2.2.1 | None | SRR11972175 | MDR-TB | lineage2.2.1 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | SRR13861499 | Other | lineage4.9 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR13591410 | Other | lineage4.9;lineage4.3.4.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR14088391 | Pre-XDR-TB | lineage3 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR15723110 | Sensitive | lineage2.2.1 | None | SRR16295791 | Other | lineage2.2.1 | None | SRR1791899 | HR-TB | La1.8.1 | None | SRR1791940 | Other | La1.8.1 | None | SRR19304109 | Other | lineage4.8 | None | SRR18911000 | Sensitive | lineage2.2.1 | None | SRR19304095 | Other | lineage4.1.2.1 | None | SRR18213800 | Other | lineage3.1.2 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR2101628 | Other | lineage4.3.2.1 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR2101643 | Other | lineage2.2.1 | None | SRR2101691 | Other | lineage2.2.1 | None | SRR21728710 | Other | lineage4.1.1.3 | None | SRR21675949 | Other | lineage4.3.3 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR21676929 | Other | lineage1.2.1.2.1 | None | SRR21711124 | Other | lineage1.1.3 | None | SRR21728339 | Other | lineage3 | None | ERR2229554 | Other | lineage4.8 | None | ERR176470 | Other | lineage4.3.4.1 | mw | ERR2229031 | Other | lineage4.9 | None | SRR22424905 | RR-TB | lineage4.9 | None | ERR1462610 | Other | La2 | None | SRR305201 | Sensitive | lineage4.9 | None | ERR553231 | Other | lineage4.1.2.1 | None | ERR2229033 | Other | lineage4.8 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2229780 | Other | lineage4.9 | None | ERR1199039 | Sensitive | lineage4.6.1 | None | ERR2229358 | Other | lineage4.8 | None | ERR2229336 | Other | lineage4.8 | None | ERR2228874 | Other | lineage4 | None | SAMN02380985 | Sensitive | lineage4.2.2.2 | None | ERR2228859 | RR-TB | lineage4 | None | SRR4034769 | Other | lineage4.1.1 | None | ERR2228888 | Other | lineage4.8 | None | ERR4817749 | Sensitive | lineage4.1.2.1 | None | ERR4818753 | Other | lineage3 | gb | SAMN02585982 | MDR-TB | lineage4.3.3 | None | SRR5067459 | HR-TB | lineage4.2 | None | ERR2446433 | Other | lineage4.1.2.1 | None | SRR5007155 | HR-TB | lineage4.1.2.1 | None | SRR5074060 | Sensitive | lineage2.2.1 | vn | SAMN02350447 | Sensitive | lineage2.2.1.1 | None | SAMN02350456 | Sensitive | lineage4.3.2.1 | None | SRR5074164 | Sensitive | lineage2.2.1.1 | vn | SRR5341417 | Pre-XDR-TB | lineage3 | None | SAMN02350450 | Sensitive | lineage1.2.2.1 | None | ERR4820801 | Other | lineage1.2.2 | None | SRR5341254 | Other | lineage4.2.2.2 | in | SAMN02584601 | Other | lineage2.2.1 | None | SRR6046087 | Other | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045599 | Other | lineage4.8 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045764 | Sensitive | lineage4.9 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045036 | Other | lineage4;lineage3 | None | SRR6045045 | Other | lineage2.2.1 | None | SRR6045124 | Other | lineage4.9 | None | SRR6045321 | Other | lineage1.1.3.1 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6046208 | Other | lineage4 | None | SRR6045289 | Other | None | SRR6046015 | Other | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR6046177 | Other | lineage3.1.2 | None | SRR6046189 | Other | lineage4.8 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045332 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045358 | Sensitive | lineage4.9 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6045379 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046481 | Other | lineage4.1.1.3.1 | None | SRR6046517 | Other | lineage4.8 | None |
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