TB-Profiler result

Run: SRR6046015
Summary

Run ID: SRR6046015

Sample name:

Date: 04-04-2023 12:09:21

Number of reads: 21053

Percentage reads mapped: 2.99

Strain: lineage4.9

Drug-resistance: Other

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.88 streptomycin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.25 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6616 c.-686A>G upstream_gene_variant 1.0
gyrA 6634 c.-668T>C upstream_gene_variant 1.0
gyrA 6637 c.-665T>G upstream_gene_variant 1.0
gyrA 6640 c.-662A>G upstream_gene_variant 1.0
gyrA 6649 c.-653T>C upstream_gene_variant 1.0
gyrA 6652 c.-650C>G upstream_gene_variant 1.0
gyrA 6655 c.-647T>C upstream_gene_variant 1.0
gyrA 6670 c.-632G>C upstream_gene_variant 1.0
gyrA 6673 c.-629A>C upstream_gene_variant 1.0
gyrA 6700 c.-602T>C upstream_gene_variant 1.0
gyrA 6703 c.-599G>C upstream_gene_variant 1.0
gyrA 6706 c.-596G>A upstream_gene_variant 1.0
gyrA 6709 c.-593A>G upstream_gene_variant 1.0
gyrA 6712 c.-590G>C upstream_gene_variant 1.0
gyrA 6727 c.-575G>T upstream_gene_variant 1.0
gyrA 6730 c.-572A>G upstream_gene_variant 1.0
gyrA 6745 c.-557T>G upstream_gene_variant 1.0
gyrA 6778 c.-524C>T upstream_gene_variant 1.0
gyrA 6793 c.-509T>C upstream_gene_variant 1.0
gyrB 6797 p.Gly520Thr missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8471 c.1170T>C synonymous_variant 1.0
gyrA 8480 c.1179C>T synonymous_variant 1.0
gyrA 8486 c.1185T>C synonymous_variant 1.0
gyrA 8504 c.1203G>C synonymous_variant 1.0
gyrA 8516 c.1215T>C synonymous_variant 1.0
gyrA 8561 c.1260A>C synonymous_variant 1.0
gyrA 8571 c.1270C>T synonymous_variant 1.0
gyrA 8603 c.1302A>C synonymous_variant 1.0
gyrA 9182 c.1881T>C synonymous_variant 1.0
gyrA 9191 c.1890G>C synonymous_variant 1.0
mshA 575695 c.348C>G synonymous_variant 1.0
mshA 575704 c.357T>C synonymous_variant 1.0
mshA 575705 c.358T>C synonymous_variant 1.0
mshA 575713 c.366G>A synonymous_variant 1.0
mshA 575719 c.372C>T synonymous_variant 1.0
mshA 575734 c.387T>G synonymous_variant 1.0
mshA 575737 c.390T>C synonymous_variant 1.0
mshA 575746 c.399C>G synonymous_variant 1.0
mshA 575752 c.405G>A synonymous_variant 1.0
mshA 575767 c.420G>A synonymous_variant 1.0
mshA 575771 p.Val142Ser missense_variant 1.0
mshA 575779 c.432A>G synonymous_variant 1.0
ccsA 620362 p.Ala158Thr missense_variant 1.0
ccsA 620367 c.477T>C synonymous_variant 1.0
ccsA 620373 c.483C>G synonymous_variant 1.0
ccsA 620385 c.495G>C synonymous_variant 1.0
ccsA 620388 c.498A>G synonymous_variant 1.0
ccsA 620412 c.522T>C synonymous_variant 1.0
ccsA 620415 c.525T>C synonymous_variant 1.0
ccsA 620433 c.543C>G synonymous_variant 1.0
ccsA 620436 c.546T>C synonymous_variant 1.0
ccsA 620439 c.549T>C synonymous_variant 1.0
ccsA 620703 c.813G>C synonymous_variant 1.0
ccsA 620710 p.Val274Ile missense_variant 1.0
ccsA 620718 c.828G>C synonymous_variant 1.0
ccsA 620721 c.831G>C synonymous_variant 1.0
ccsA 620730 c.840C>T synonymous_variant 1.0
ccsA 620733 c.843G>C synonymous_variant 1.0
ccsA 620734 c.844C>A synonymous_variant 1.0
ccsA 620739 c.849A>G synonymous_variant 1.0
ccsA 620745 c.855G>C synonymous_variant 1.0
ccsA 620748 c.858T>A synonymous_variant 1.0
ccsA 620778 c.888T>C synonymous_variant 1.0
ccsA 620784 c.894C>G synonymous_variant 1.0
ccsA 620787 c.897C>G synonymous_variant 1.0
rpoB 759669 c.-138G>T upstream_gene_variant 1.0
rpoB 760253 c.447T>C synonymous_variant 1.0
rpoB 760283 c.477G>C synonymous_variant 1.0
rpoB 760307 c.501T>C synonymous_variant 1.0
rpoB 760328 c.522G>C synonymous_variant 1.0
rpoB 760331 c.525G>C synonymous_variant 1.0
rpoB 760337 c.531C>G synonymous_variant 1.0
rpoB 760340 c.534G>C synonymous_variant 1.0
rpoB 760361 c.555T>C synonymous_variant 1.0
rpoB 760475 c.669A>G synonymous_variant 1.0
rpoB 760481 c.675G>C synonymous_variant 1.0
rpoB 760484 c.678A>G synonymous_variant 1.0
rpoB 760522 p.Ser239Asn missense_variant 1.0
rpoB 760532 c.726T>C synonymous_variant 1.0
rpoB 760533 p.Val243Thr missense_variant 1.0
rpoB 761732 c.1926C>G synonymous_variant 0.67
rpoB 761735 c.1929C>G synonymous_variant 0.67
rpoB 761747 c.1941G>C synonymous_variant 0.33
rpoB 761750 c.1944G>C synonymous_variant 0.33
rpoB 761765 c.1959T>C synonymous_variant 0.33
rpoB 761768 c.1962G>T synonymous_variant 0.33
rpoB 761772 p.His656Ala missense_variant 0.33
rpoB 761778 p.Asn658Asp missense_variant 0.33
rpoB 761791 p.Arg662His missense_variant 0.5
rpoB 761813 c.2007T>C synonymous_variant 0.5
rpoB 761815 p.Ala670Glu missense_variant 0.5
rpoC 762857 c.-513C>G upstream_gene_variant 1.0
rpoC 762860 c.-510G>C upstream_gene_variant 1.0
rpoC 762863 c.-507T>C upstream_gene_variant 1.0
rpoB 762879 p.Met1025Val missense_variant 0.67
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 764024 c.655T>C synonymous_variant 1.0
rpoC 764040 p.Ser224Asn missense_variant 1.0
rpoC 764044 c.675T>C synonymous_variant 1.0
rpoC 764059 c.690G>C synonymous_variant 1.0
rpoC 764083 c.714A>G synonymous_variant 1.0
rpoC 764098 c.729A>G synonymous_variant 1.0
rpoC 764101 c.732C>G synonymous_variant 1.0
rpoC 764131 c.762T>C synonymous_variant 1.0
rpoC 764161 c.792G>C synonymous_variant 1.0
rpoC 765541 c.2172C>G synonymous_variant 1.0
rpoC 765553 c.2184C>T synonymous_variant 1.0
rpoC 765556 c.2187G>C synonymous_variant 1.0
rpoC 765559 c.2190G>C synonymous_variant 1.0
rpoC 765577 c.2208G>C synonymous_variant 1.0
rpoC 765578 c.2209C>T synonymous_variant 1.0
rpoC 765583 c.2214G>T synonymous_variant 1.0
rpoC 765613 p.His748Gln missense_variant 0.6
rpoC 765625 c.2256C>G synonymous_variant 0.6
rpoC 765628 c.2259G>C synonymous_variant 0.6
rpoC 765631 p.Asp754Glu missense_variant 0.6
rpoC 765883 c.2514C>G synonymous_variant 1.0
rpoC 765886 c.2517C>G synonymous_variant 1.0
rpoC 765892 c.2523T>C synonymous_variant 1.0
rpoC 765928 c.2559C>G synonymous_variant 1.0
rpoC 767180 p.Ala1271Gln missense_variant 1.0
rpoC 767191 c.3822C>G synonymous_variant 1.0
mmpL5 775937 c.2544G>C synonymous_variant 1.0
mmpL5 775966 p.Ala839Ser missense_variant 0.67
mmpL5 775970 c.2511G>C synonymous_variant 0.67
mmpL5 775975 c.2506T>C synonymous_variant 1.0
mmpL5 775981 p.Leu834Met missense_variant 1.0
mmpL5 775991 c.2490G>A synonymous_variant 0.67
mmpL5 775997 c.2484T>C synonymous_variant 1.0
mmpL5 776000 p.Leu827Ile missense_variant 0.67
mmpL5 776005 p.Ile826Leu missense_variant 1.0
mmpL5 776009 c.2472A>G synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rpsL 781916 c.357T>C synonymous_variant 1.0
rpsL 781929 p.Gly124Ser missense_variant 1.0
rplC 800612 c.-197A>G upstream_gene_variant 1.0
rplC 800618 c.-191T>C upstream_gene_variant 1.0
fbiC 1303601 p.Glu224Gly missense_variant 1.0
fbiC 1304880 c.1950C>G synonymous_variant 1.0
fbiC 1304893 p.Gly655Ser missense_variant 1.0
fbiC 1304916 c.1986T>C synonymous_variant 1.0
fbiC 1304925 c.1995G>C synonymous_variant 1.0
fbiC 1304928 c.1998T>C synonymous_variant 1.0
fbiC 1304934 c.2004C>G synonymous_variant 1.0
fbiC 1304937 c.2007G>C synonymous_variant 1.0
fbiC 1304940 c.2010A>G synonymous_variant 1.0
fbiC 1304946 c.2016G>C synonymous_variant 1.0
fbiC 1304958 c.2028T>G synonymous_variant 1.0
fbiC 1304961 c.2031C>T synonymous_variant 1.0
fbiC 1304991 c.2061G>C synonymous_variant 1.0
rrs 1471878 n.33C>T non_coding_transcript_exon_variant 1.0
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 1.0
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 1.0
rrs 1472122 n.277G>A non_coding_transcript_exon_variant 1.0
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 1.0
rrs 1472128 n.283G>A non_coding_transcript_exon_variant 1.0
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 1.0
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 1.0
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 1.0
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 1.0
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 1.0
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 1.0
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472234 n.389T>C non_coding_transcript_exon_variant 1.0
rrs 1472236 n.391C>G non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.6
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 1.0
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.5
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.5
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.67
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.5
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.67
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.27
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 0.5
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.8
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.5
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.8
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.42
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.71
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.42
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.5
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.8
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.89
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.89
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.33
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.33
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.89
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.95
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.95
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.87
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.96
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.81
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 1.0
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 1.0
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 1.0
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.33
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.5
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.5
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.5
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.5
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.5
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.5
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.67
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473147 n.1302G>T non_coding_transcript_exon_variant 0.8
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.8
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.86
rrs 1473164 n.1319C>A non_coding_transcript_exon_variant 0.86
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473172 n.1327T>C non_coding_transcript_exon_variant 1.0
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 1.0
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 1.0
rrs 1473191 n.1346C>T non_coding_transcript_exon_variant 1.0
rrs 1473206 n.1361G>A non_coding_transcript_exon_variant 0.92
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.94
rrs 1473248 n.1403G>A non_coding_transcript_exon_variant 0.7
rrs 1473249 n.1404T>C non_coding_transcript_exon_variant 0.7
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 1.0
rrs 1473255 n.1410A>G non_coding_transcript_exon_variant 0.7
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473260 n.1415G>T non_coding_transcript_exon_variant 0.7
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473281 n.1436C>A non_coding_transcript_exon_variant 0.62
rrs 1473282 n.1437C>G non_coding_transcript_exon_variant 0.62
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.62
rrs 1473296 n.1451G>C non_coding_transcript_exon_variant 0.62
rrs 1473297 n.1452G>T non_coding_transcript_exon_variant 0.62
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.25
rrs 1473327 n.1482A>G non_coding_transcript_exon_variant 0.62
rrs 1473328 n.1483C>T non_coding_transcript_exon_variant 0.62
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.71
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.67
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.67
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474839 n.1182C>T non_coding_transcript_exon_variant 0.57
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.57
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.88
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.62
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.75
rrl 1474892 n.1235G>A non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 1.0
rrl 1474903 n.1246T>A non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 1.0
rrl 1474920 n.1263G>C non_coding_transcript_exon_variant 1.0
rrl 1475552 n.1895G>C non_coding_transcript_exon_variant 1.0
rrl 1475574 n.1917C>A non_coding_transcript_exon_variant 1.0
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 1.0
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 1.0
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 1.0
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 1.0
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 1.0
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 1.0
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 1.0
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476268 n.2611A>T non_coding_transcript_exon_variant 0.69
rrl 1476275 n.2618T>A non_coding_transcript_exon_variant 0.69
rrl 1476279 n.2622G>A non_coding_transcript_exon_variant 0.69
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 1.0
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 1.0
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.71
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.78
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 1.0
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 1.0
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.26
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 1.0
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 1.0
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.89
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.95
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 1.0
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.97
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.98
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.25
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 1.0
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 1.0
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.86
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 1.0
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.86
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 1.0
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 1.0
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 1.0
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 1.0
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.89
rrl 1476572 n.2915G>A non_coding_transcript_exon_variant 0.89
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.89
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833745 c.204G>C synonymous_variant 1.0
rpsA 1833787 c.246C>G synonymous_variant 1.0
rpsA 1833790 c.249T>A synonymous_variant 1.0
rpsA 1833799 c.258C>G synonymous_variant 1.0
rpsA 1833811 c.270G>C synonymous_variant 1.0
kasA 2518609 p.Met165Ile missense_variant 1.0
kasA 2518621 c.507G>A synonymous_variant 1.0
Rv2752c 3065018 p.Asn392His missense_variant 1.0
Rv2752c 3065028 c.1164G>C synonymous_variant 1.0
Rv2752c 3065031 c.1161G>C synonymous_variant 1.0
Rv2752c 3065048 c.1144C>T synonymous_variant 1.0
ald 3087672 p.His285Asp missense_variant 1.0
ald 3087680 c.861G>C synonymous_variant 1.0
ald 3087699 p.Leu294Val missense_variant 1.0
ald 3087704 c.885T>C synonymous_variant 1.0
ald 3087726 p.Ala303Ser missense_variant 1.0
ald 3087729 p.Ser304Ala missense_variant 1.0
ald 3087737 c.918G>C synonymous_variant 1.0
ald 3087749 c.930C>G synonymous_variant 1.0
ald 3087750 p.Tyr311Val missense_variant 1.0
ald 3087767 c.948G>C synonymous_variant 1.0
rpoA 3877743 c.765T>C synonymous_variant 1.0
rpoA 3877764 c.744C>G synonymous_variant 1.0
rpoA 3877770 c.738A>G synonymous_variant 1.0
rpoA 3877776 c.732T>C synonymous_variant 1.0
rpoA 3877782 c.726T>C synonymous_variant 1.0
rpoA 3877818 c.690A>G synonymous_variant 1.0
rpoA 3877839 c.669G>C synonymous_variant 1.0
rpoA 3877875 c.633T>G synonymous_variant 1.0
rpoA 3877962 c.546G>T synonymous_variant 1.0
rpoA 3877986 c.522G>C synonymous_variant 0.75
rpoA 3877989 c.519A>G synonymous_variant 0.75
rpoA 3878001 c.507A>G synonymous_variant 0.75
rpoA 3878022 c.486T>C synonymous_variant 0.67
rpoA 3878025 c.483C>T synonymous_variant 0.67
rpoA 3878028 c.480G>C synonymous_variant 0.67
rpoA 3878031 c.477T>C synonymous_variant 0.67
rpoA 3878040 c.468T>C synonymous_variant 0.67
rpoA 3878046 c.462T>C synonymous_variant 0.67
rpoA 3878049 c.459G>C synonymous_variant 0.67
rpoA 3878055 c.453A>G synonymous_variant 0.67
rpoA 3878061 c.447G>C synonymous_variant 0.67
rpoA 3878067 c.441C>G synonymous_variant 0.67
rpoA 3878070 c.438T>C synonymous_variant 0.67
clpC1 4039268 c.1437C>G synonymous_variant 1.0
clpC1 4039274 c.1431G>C synonymous_variant 1.0
clpC1 4039286 c.1419T>C synonymous_variant 1.0
clpC1 4039289 c.1416T>C synonymous_variant 1.0
clpC1 4039295 c.1410A>C synonymous_variant 1.0
clpC1 4039298 c.1407T>C synonymous_variant 1.0
clpC1 4039319 c.1386T>C synonymous_variant 0.6
clpC1 4039322 c.1383T>C synonymous_variant 0.6
clpC1 4039328 c.1377A>G synonymous_variant 0.6
clpC1 4039334 c.1371G>C synonymous_variant 0.6
clpC1 4039337 p.Thr456Gln missense_variant 0.6
clpC1 4039364 c.1341C>G synonymous_variant 1.0
clpC1 4039391 c.1314T>G synonymous_variant 1.0
clpC1 4039409 c.1296T>C synonymous_variant 1.0
clpC1 4039412 c.1293T>G synonymous_variant 1.0
clpC1 4039430 c.1275T>C synonymous_variant 1.0
clpC1 4039442 c.1263A>G synonymous_variant 1.0
clpC1 4039448 c.1257A>G synonymous_variant 1.0
clpC1 4039454 c.1251A>G synonymous_variant 1.0
clpC1 4039493 c.1212C>T synonymous_variant 1.0
clpC1 4039517 c.1188C>G synonymous_variant 1.0
clpC1 4039524 p.Phe394Tyr missense_variant 1.0
clpC1 4039526 c.1179G>C synonymous_variant 1.0
clpC1 4039532 c.1173C>T synonymous_variant 1.0
clpC1 4039547 c.1158C>G synonymous_variant 0.75
clpC1 4039553 c.1152C>G synonymous_variant 0.75
clpC1 4039562 c.1143C>G synonymous_variant 0.75
clpC1 4039576 p.Ala377Ser missense_variant 0.75
clpC1 4039577 c.1128T>C synonymous_variant 1.0
clpC1 4039586 c.1119G>C synonymous_variant 0.75
clpC1 4039610 c.1095G>C synonymous_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039622 c.1083C>G synonymous_variant 1.0
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 0.67
clpC1 4040603 c.102T>G synonymous_variant 0.67
embC 4240867 c.1005T>G synonymous_variant 1.0
embC 4240870 c.1008T>C synonymous_variant 1.0
embA 4245355 p.Ala708Gly missense_variant 1.0
embA 4245368 c.2136T>C synonymous_variant 1.0
embA 4245377 c.2145T>G synonymous_variant 1.0
embA 4245388 p.Ala719Gly missense_variant 1.0
embA 4245402 p.Thr724Ala missense_variant 1.0
embA 4245407 c.2175G>C synonymous_variant 1.0
embA 4245408 p.Leu726Ile missense_variant 1.0
embA 4245411 p.Ser727Ala missense_variant 1.0
embA 4245414 p.Thr728Ser missense_variant 1.0
embA 4245423 c.2192_2193insGCCGAC disruptive_inframe_insertion 1.0
embA 4245431 c.2199T>C synonymous_variant 1.0
embA 4245461 c.2229C>G synonymous_variant 1.0
embA 4245465 p.Pro745Ala missense_variant 1.0
embA 4245470 c.2238T>C synonymous_variant 1.0
embA 4245485 c.2253A>G synonymous_variant 1.0
embB 4248095 c.1582_1584delCTCinsTTG synonymous_variant 1.0
embB 4248118 c.1605T>C synonymous_variant 1.0
embB 4248127 c.1614G>C synonymous_variant 1.0
embB 4248133 c.1620C>G synonymous_variant 1.0
embB 4248142 c.1629T>C synonymous_variant 1.0
embB 4248143 c.1630T>C synonymous_variant 1.0
embB 4248157 c.1644A>G synonymous_variant 1.0
embB 4248206 p.Ser565Gly missense_variant 1.0
embB 4248220 c.1707A>G synonymous_variant 1.0
embB 4248241 c.1728C>T synonymous_variant 1.0