Run ID: SRR6046015
Sample name:
Date: 04-04-2023 12:09:21
Number of reads: 21053
Percentage reads mapped: 2.99
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6616 | c.-686A>G | upstream_gene_variant | 1.0 |
gyrA | 6634 | c.-668T>C | upstream_gene_variant | 1.0 |
gyrA | 6637 | c.-665T>G | upstream_gene_variant | 1.0 |
gyrA | 6640 | c.-662A>G | upstream_gene_variant | 1.0 |
gyrA | 6649 | c.-653T>C | upstream_gene_variant | 1.0 |
gyrA | 6652 | c.-650C>G | upstream_gene_variant | 1.0 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 1.0 |
gyrA | 6670 | c.-632G>C | upstream_gene_variant | 1.0 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 1.0 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 1.0 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 1.0 |
gyrA | 6706 | c.-596G>A | upstream_gene_variant | 1.0 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 1.0 |
gyrA | 6712 | c.-590G>C | upstream_gene_variant | 1.0 |
gyrA | 6727 | c.-575G>T | upstream_gene_variant | 1.0 |
gyrA | 6730 | c.-572A>G | upstream_gene_variant | 1.0 |
gyrA | 6745 | c.-557T>G | upstream_gene_variant | 1.0 |
gyrA | 6778 | c.-524C>T | upstream_gene_variant | 1.0 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 1.0 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8471 | c.1170T>C | synonymous_variant | 1.0 |
gyrA | 8480 | c.1179C>T | synonymous_variant | 1.0 |
gyrA | 8486 | c.1185T>C | synonymous_variant | 1.0 |
gyrA | 8504 | c.1203G>C | synonymous_variant | 1.0 |
gyrA | 8516 | c.1215T>C | synonymous_variant | 1.0 |
gyrA | 8561 | c.1260A>C | synonymous_variant | 1.0 |
gyrA | 8571 | c.1270C>T | synonymous_variant | 1.0 |
gyrA | 8603 | c.1302A>C | synonymous_variant | 1.0 |
gyrA | 9182 | c.1881T>C | synonymous_variant | 1.0 |
gyrA | 9191 | c.1890G>C | synonymous_variant | 1.0 |
mshA | 575695 | c.348C>G | synonymous_variant | 1.0 |
mshA | 575704 | c.357T>C | synonymous_variant | 1.0 |
mshA | 575705 | c.358T>C | synonymous_variant | 1.0 |
mshA | 575713 | c.366G>A | synonymous_variant | 1.0 |
mshA | 575719 | c.372C>T | synonymous_variant | 1.0 |
mshA | 575734 | c.387T>G | synonymous_variant | 1.0 |
mshA | 575737 | c.390T>C | synonymous_variant | 1.0 |
mshA | 575746 | c.399C>G | synonymous_variant | 1.0 |
mshA | 575752 | c.405G>A | synonymous_variant | 1.0 |
mshA | 575767 | c.420G>A | synonymous_variant | 1.0 |
mshA | 575771 | p.Val142Ser | missense_variant | 1.0 |
mshA | 575779 | c.432A>G | synonymous_variant | 1.0 |
ccsA | 620362 | p.Ala158Thr | missense_variant | 1.0 |
ccsA | 620367 | c.477T>C | synonymous_variant | 1.0 |
ccsA | 620373 | c.483C>G | synonymous_variant | 1.0 |
ccsA | 620385 | c.495G>C | synonymous_variant | 1.0 |
ccsA | 620388 | c.498A>G | synonymous_variant | 1.0 |
ccsA | 620412 | c.522T>C | synonymous_variant | 1.0 |
ccsA | 620415 | c.525T>C | synonymous_variant | 1.0 |
ccsA | 620433 | c.543C>G | synonymous_variant | 1.0 |
ccsA | 620436 | c.546T>C | synonymous_variant | 1.0 |
ccsA | 620439 | c.549T>C | synonymous_variant | 1.0 |
ccsA | 620703 | c.813G>C | synonymous_variant | 1.0 |
ccsA | 620710 | p.Val274Ile | missense_variant | 1.0 |
ccsA | 620718 | c.828G>C | synonymous_variant | 1.0 |
ccsA | 620721 | c.831G>C | synonymous_variant | 1.0 |
ccsA | 620730 | c.840C>T | synonymous_variant | 1.0 |
ccsA | 620733 | c.843G>C | synonymous_variant | 1.0 |
ccsA | 620734 | c.844C>A | synonymous_variant | 1.0 |
ccsA | 620739 | c.849A>G | synonymous_variant | 1.0 |
ccsA | 620745 | c.855G>C | synonymous_variant | 1.0 |
ccsA | 620748 | c.858T>A | synonymous_variant | 1.0 |
ccsA | 620778 | c.888T>C | synonymous_variant | 1.0 |
ccsA | 620784 | c.894C>G | synonymous_variant | 1.0 |
ccsA | 620787 | c.897C>G | synonymous_variant | 1.0 |
rpoB | 759669 | c.-138G>T | upstream_gene_variant | 1.0 |
rpoB | 760253 | c.447T>C | synonymous_variant | 1.0 |
rpoB | 760283 | c.477G>C | synonymous_variant | 1.0 |
rpoB | 760307 | c.501T>C | synonymous_variant | 1.0 |
rpoB | 760328 | c.522G>C | synonymous_variant | 1.0 |
rpoB | 760331 | c.525G>C | synonymous_variant | 1.0 |
rpoB | 760337 | c.531C>G | synonymous_variant | 1.0 |
rpoB | 760340 | c.534G>C | synonymous_variant | 1.0 |
rpoB | 760361 | c.555T>C | synonymous_variant | 1.0 |
rpoB | 760475 | c.669A>G | synonymous_variant | 1.0 |
rpoB | 760481 | c.675G>C | synonymous_variant | 1.0 |
rpoB | 760484 | c.678A>G | synonymous_variant | 1.0 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 1.0 |
rpoB | 760532 | c.726T>C | synonymous_variant | 1.0 |
rpoB | 760533 | p.Val243Thr | missense_variant | 1.0 |
rpoB | 761732 | c.1926C>G | synonymous_variant | 0.67 |
rpoB | 761735 | c.1929C>G | synonymous_variant | 0.67 |
rpoB | 761747 | c.1941G>C | synonymous_variant | 0.33 |
rpoB | 761750 | c.1944G>C | synonymous_variant | 0.33 |
rpoB | 761765 | c.1959T>C | synonymous_variant | 0.33 |
rpoB | 761768 | c.1962G>T | synonymous_variant | 0.33 |
rpoB | 761772 | p.His656Ala | missense_variant | 0.33 |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.33 |
rpoB | 761791 | p.Arg662His | missense_variant | 0.5 |
rpoB | 761813 | c.2007T>C | synonymous_variant | 0.5 |
rpoB | 761815 | p.Ala670Glu | missense_variant | 0.5 |
rpoC | 762857 | c.-513C>G | upstream_gene_variant | 1.0 |
rpoC | 762860 | c.-510G>C | upstream_gene_variant | 1.0 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 1.0 |
rpoB | 762879 | p.Met1025Val | missense_variant | 0.67 |
rpoC | 763468 | c.99G>C | synonymous_variant | 1.0 |
rpoC | 763486 | c.117T>C | synonymous_variant | 1.0 |
rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 |
rpoC | 763570 | c.201G>C | synonymous_variant | 1.0 |
rpoC | 764024 | c.655T>C | synonymous_variant | 1.0 |
rpoC | 764040 | p.Ser224Asn | missense_variant | 1.0 |
rpoC | 764044 | c.675T>C | synonymous_variant | 1.0 |
rpoC | 764059 | c.690G>C | synonymous_variant | 1.0 |
rpoC | 764083 | c.714A>G | synonymous_variant | 1.0 |
rpoC | 764098 | c.729A>G | synonymous_variant | 1.0 |
rpoC | 764101 | c.732C>G | synonymous_variant | 1.0 |
rpoC | 764131 | c.762T>C | synonymous_variant | 1.0 |
rpoC | 764161 | c.792G>C | synonymous_variant | 1.0 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 1.0 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 1.0 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 1.0 |
rpoC | 765559 | c.2190G>C | synonymous_variant | 1.0 |
rpoC | 765577 | c.2208G>C | synonymous_variant | 1.0 |
rpoC | 765578 | c.2209C>T | synonymous_variant | 1.0 |
rpoC | 765583 | c.2214G>T | synonymous_variant | 1.0 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.6 |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.6 |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.6 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.6 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 1.0 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 1.0 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 1.0 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 1.0 |
rpoC | 767180 | p.Ala1271Gln | missense_variant | 1.0 |
rpoC | 767191 | c.3822C>G | synonymous_variant | 1.0 |
mmpL5 | 775937 | c.2544G>C | synonymous_variant | 1.0 |
mmpL5 | 775966 | p.Ala839Ser | missense_variant | 0.67 |
mmpL5 | 775970 | c.2511G>C | synonymous_variant | 0.67 |
mmpL5 | 775975 | c.2506T>C | synonymous_variant | 1.0 |
mmpL5 | 775981 | p.Leu834Met | missense_variant | 1.0 |
mmpL5 | 775991 | c.2490G>A | synonymous_variant | 0.67 |
mmpL5 | 775997 | c.2484T>C | synonymous_variant | 1.0 |
mmpL5 | 776000 | p.Leu827Ile | missense_variant | 0.67 |
mmpL5 | 776005 | p.Ile826Leu | missense_variant | 1.0 |
mmpL5 | 776009 | c.2472A>G | synonymous_variant | 1.0 |
rpsL | 781892 | c.333A>G | synonymous_variant | 1.0 |
rpsL | 781898 | c.339A>T | synonymous_variant | 1.0 |
rpsL | 781916 | c.357T>C | synonymous_variant | 1.0 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 1.0 |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 1.0 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 1.0 |
fbiC | 1303601 | p.Glu224Gly | missense_variant | 1.0 |
fbiC | 1304880 | c.1950C>G | synonymous_variant | 1.0 |
fbiC | 1304893 | p.Gly655Ser | missense_variant | 1.0 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 1.0 |
fbiC | 1304925 | c.1995G>C | synonymous_variant | 1.0 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 1.0 |
fbiC | 1304934 | c.2004C>G | synonymous_variant | 1.0 |
fbiC | 1304937 | c.2007G>C | synonymous_variant | 1.0 |
fbiC | 1304940 | c.2010A>G | synonymous_variant | 1.0 |
fbiC | 1304946 | c.2016G>C | synonymous_variant | 1.0 |
fbiC | 1304958 | c.2028T>G | synonymous_variant | 1.0 |
fbiC | 1304961 | c.2031C>T | synonymous_variant | 1.0 |
fbiC | 1304991 | c.2061G>C | synonymous_variant | 1.0 |
rrs | 1471878 | n.33C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1471896 | n.51T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1471900 | n.55C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472378 | n.533G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473281 | n.1436C>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473282 | n.1437C>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473296 | n.1451G>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473297 | n.1452G>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474784 | n.1127C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474798 | n.1141C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474803 | n.1146G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474825 | n.1168G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474839 | n.1182C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474903 | n.1246T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475552 | n.1895G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475574 | n.1917C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 1.0 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 1.0 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 1.0 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 1.0 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 1.0 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 1.0 |
kasA | 2518609 | p.Met165Ile | missense_variant | 1.0 |
kasA | 2518621 | c.507G>A | synonymous_variant | 1.0 |
Rv2752c | 3065018 | p.Asn392His | missense_variant | 1.0 |
Rv2752c | 3065028 | c.1164G>C | synonymous_variant | 1.0 |
Rv2752c | 3065031 | c.1161G>C | synonymous_variant | 1.0 |
Rv2752c | 3065048 | c.1144C>T | synonymous_variant | 1.0 |
ald | 3087672 | p.His285Asp | missense_variant | 1.0 |
ald | 3087680 | c.861G>C | synonymous_variant | 1.0 |
ald | 3087699 | p.Leu294Val | missense_variant | 1.0 |
ald | 3087704 | c.885T>C | synonymous_variant | 1.0 |
ald | 3087726 | p.Ala303Ser | missense_variant | 1.0 |
ald | 3087729 | p.Ser304Ala | missense_variant | 1.0 |
ald | 3087737 | c.918G>C | synonymous_variant | 1.0 |
ald | 3087749 | c.930C>G | synonymous_variant | 1.0 |
ald | 3087750 | p.Tyr311Val | missense_variant | 1.0 |
ald | 3087767 | c.948G>C | synonymous_variant | 1.0 |
rpoA | 3877743 | c.765T>C | synonymous_variant | 1.0 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 1.0 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 1.0 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 1.0 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 1.0 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 1.0 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 1.0 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 1.0 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 1.0 |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.75 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.75 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.75 |
rpoA | 3878022 | c.486T>C | synonymous_variant | 0.67 |
rpoA | 3878025 | c.483C>T | synonymous_variant | 0.67 |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.67 |
rpoA | 3878031 | c.477T>C | synonymous_variant | 0.67 |
rpoA | 3878040 | c.468T>C | synonymous_variant | 0.67 |
rpoA | 3878046 | c.462T>C | synonymous_variant | 0.67 |
rpoA | 3878049 | c.459G>C | synonymous_variant | 0.67 |
rpoA | 3878055 | c.453A>G | synonymous_variant | 0.67 |
rpoA | 3878061 | c.447G>C | synonymous_variant | 0.67 |
rpoA | 3878067 | c.441C>G | synonymous_variant | 0.67 |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.67 |
clpC1 | 4039268 | c.1437C>G | synonymous_variant | 1.0 |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 1.0 |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 1.0 |
clpC1 | 4039289 | c.1416T>C | synonymous_variant | 1.0 |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 1.0 |
clpC1 | 4039298 | c.1407T>C | synonymous_variant | 1.0 |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.6 |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.6 |
clpC1 | 4039328 | c.1377A>G | synonymous_variant | 0.6 |
clpC1 | 4039334 | c.1371G>C | synonymous_variant | 0.6 |
clpC1 | 4039337 | p.Thr456Gln | missense_variant | 0.6 |
clpC1 | 4039364 | c.1341C>G | synonymous_variant | 1.0 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 1.0 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 1.0 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 1.0 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 1.0 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 1.0 |
clpC1 | 4039448 | c.1257A>G | synonymous_variant | 1.0 |
clpC1 | 4039454 | c.1251A>G | synonymous_variant | 1.0 |
clpC1 | 4039493 | c.1212C>T | synonymous_variant | 1.0 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 1.0 |
clpC1 | 4039524 | p.Phe394Tyr | missense_variant | 1.0 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 1.0 |
clpC1 | 4039532 | c.1173C>T | synonymous_variant | 1.0 |
clpC1 | 4039547 | c.1158C>G | synonymous_variant | 0.75 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.75 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.75 |
clpC1 | 4039576 | p.Ala377Ser | missense_variant | 0.75 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 1.0 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.75 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 1.0 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 1.0 |
clpC1 | 4039622 | c.1083C>G | synonymous_variant | 1.0 |
clpC1 | 4040600 | c.103_105delTTAinsCTG | synonymous_variant | 0.67 |
clpC1 | 4040603 | c.102T>G | synonymous_variant | 0.67 |
embC | 4240867 | c.1005T>G | synonymous_variant | 1.0 |
embC | 4240870 | c.1008T>C | synonymous_variant | 1.0 |
embA | 4245355 | p.Ala708Gly | missense_variant | 1.0 |
embA | 4245368 | c.2136T>C | synonymous_variant | 1.0 |
embA | 4245377 | c.2145T>G | synonymous_variant | 1.0 |
embA | 4245388 | p.Ala719Gly | missense_variant | 1.0 |
embA | 4245402 | p.Thr724Ala | missense_variant | 1.0 |
embA | 4245407 | c.2175G>C | synonymous_variant | 1.0 |
embA | 4245408 | p.Leu726Ile | missense_variant | 1.0 |
embA | 4245411 | p.Ser727Ala | missense_variant | 1.0 |
embA | 4245414 | p.Thr728Ser | missense_variant | 1.0 |
embA | 4245423 | c.2192_2193insGCCGAC | disruptive_inframe_insertion | 1.0 |
embA | 4245431 | c.2199T>C | synonymous_variant | 1.0 |
embA | 4245461 | c.2229C>G | synonymous_variant | 1.0 |
embA | 4245465 | p.Pro745Ala | missense_variant | 1.0 |
embA | 4245470 | c.2238T>C | synonymous_variant | 1.0 |
embA | 4245485 | c.2253A>G | synonymous_variant | 1.0 |
embB | 4248095 | c.1582_1584delCTCinsTTG | synonymous_variant | 1.0 |
embB | 4248118 | c.1605T>C | synonymous_variant | 1.0 |
embB | 4248127 | c.1614G>C | synonymous_variant | 1.0 |
embB | 4248133 | c.1620C>G | synonymous_variant | 1.0 |
embB | 4248142 | c.1629T>C | synonymous_variant | 1.0 |
embB | 4248143 | c.1630T>C | synonymous_variant | 1.0 |
embB | 4248157 | c.1644A>G | synonymous_variant | 1.0 |
embB | 4248206 | p.Ser565Gly | missense_variant | 1.0 |
embB | 4248220 | c.1707A>G | synonymous_variant | 1.0 |
embB | 4248241 | c.1728C>T | synonymous_variant | 1.0 |