Run ID: SRR1172816
Sample name:
Date: 03-04-2023 03:10:56
Number of reads: 809076
Percentage reads mapped: 12.06
Strain: lineage4.3.3
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.99 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761161 | p.Leu452Pro | missense_variant | 1.0 | rifampicin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.89 | streptomycin |
fabG1 | 1673432 | c.-8T>A | upstream_gene_variant | 1.0 | isoniazid |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288785 | c.456dupC | frameshift_variant | 1.0 | pyrazinamide, pyrazinamide |
embB | 4247429 | p.Met306Val | missense_variant | 1.0 | ethambutol |
ethA | 4327484 | c.-11A>G | upstream_gene_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5529 | p.Asp97Gly | missense_variant | 0.13 |
gyrB | 5709 | p.Gly157Val | missense_variant | 0.15 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7800 | p.Pro167Ala | missense_variant | 0.14 |
gyrA | 7938 | p.Glu213Gln | missense_variant | 0.22 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 8390 | c.1089C>A | synonymous_variant | 0.12 |
gyrA | 8789 | c.1488C>A | synonymous_variant | 0.13 |
gyrA | 9096 | p.Leu599Met | missense_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9661 | p.Ala787Val | missense_variant | 0.15 |
gyrA | 9664 | p.Ala788Glu | missense_variant | 0.31 |
fgd1 | 491173 | c.391C>A | synonymous_variant | 0.17 |
ccsA | 619715 | c.-176C>A | upstream_gene_variant | 0.15 |
ccsA | 619827 | c.-64C>T | upstream_gene_variant | 0.15 |
ccsA | 620139 | c.249C>T | synonymous_variant | 0.22 |
ccsA | 620149 | p.Gly87Cys | missense_variant | 0.22 |
rpoB | 760397 | p.Lys197Asn | missense_variant | 0.17 |
rpoB | 761131 | p.Gly442Val | missense_variant | 0.17 |
rpoB | 762273 | p.Ala823Ser | missense_variant | 0.2 |
rpoB | 762305 | c.2499G>T | synonymous_variant | 0.15 |
rpoB | 762351 | p.Arg849Gly | missense_variant | 0.12 |
rpoC | 762926 | c.-444C>G | upstream_gene_variant | 0.14 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.14 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.21 |
rpoC | 763826 | p.Ala153Ser | missense_variant | 0.22 |
rpoC | 764813 | p.Gln482Lys | missense_variant | 0.17 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765057 | p.Asn563Ile | missense_variant | 0.13 |
rpoC | 765471 | p.Ala701Val | missense_variant | 0.12 |
rpoC | 765481 | c.2112C>T | synonymous_variant | 0.13 |
rpoC | 765911 | p.Glu848* | stop_gained | 0.2 |
rpoC | 767260 | p.Phe1297Leu | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777025 | p.Arg486Trp | missense_variant | 0.13 |
mmpL5 | 777035 | p.Gln482His | missense_variant | 0.17 |
mmpL5 | 777251 | c.1230C>T | synonymous_variant | 0.2 |
mmpL5 | 777417 | p.Pro355Gln | missense_variant | 0.25 |
mmpR5 | 778016 | c.-974G>T | upstream_gene_variant | 0.12 |
mmpL5 | 778528 | c.-48G>T | upstream_gene_variant | 0.14 |
mmpS5 | 778764 | p.Pro48Thr | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800935 | p.Glu43Lys | missense_variant | 0.17 |
rplC | 801291 | p.Phe161Leu | missense_variant | 0.25 |
fbiC | 1303013 | p.Arg28Leu | missense_variant | 0.15 |
fbiC | 1303523 | p.Trp198* | stop_gained | 0.13 |
fbiC | 1304066 | p.Ala379Val | missense_variant | 0.14 |
fbiC | 1304076 | c.1146C>T | synonymous_variant | 0.15 |
fbiC | 1304436 | c.1506G>T | synonymous_variant | 0.22 |
fbiC | 1304441 | p.Arg504Leu | missense_variant | 0.2 |
fbiC | 1304467 | p.Glu513* | stop_gained | 0.18 |
fbiC | 1304635 | p.Gln569Lys | missense_variant | 0.17 |
fbiC | 1305117 | c.2187T>A | synonymous_variant | 0.22 |
fbiC | 1305464 | p.Arg845Leu | missense_variant | 0.4 |
Rv1258c | 1406236 | p.Pro369Thr | missense_variant | 0.14 |
Rv1258c | 1406953 | p.Glu130Lys | missense_variant | 0.18 |
Rv1258c | 1406999 | c.342C>T | synonymous_variant | 0.17 |
Rv1258c | 1407318 | p.Pro8Gln | missense_variant | 0.14 |
embR | 1417367 | c.-20C>A | upstream_gene_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472128 | n.283G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472130 | n.285G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472257 | n.412G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473130 | n.1285G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473150 | n.1305T>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473161 | n.1316A>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474634 | n.977T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474640 | n.983C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474677 | n.1020A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474839 | n.1182C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474848 | n.1191G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474862 | n.1205C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474892 | n.1235G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.37 |
rrl | 1474901 | n.1244A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474903 | n.1246T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474920 | n.1263G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475686 | n.2029C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.49 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.49 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.49 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475874 | n.2217C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476056 | n.2399G>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.3 |
fabG1 | 1674085 | p.Glu216* | stop_gained | 0.13 |
inhA | 1674253 | p.Asp18Tyr | missense_variant | 0.15 |
inhA | 1674315 | c.114C>A | synonymous_variant | 0.15 |
rpsA | 1834369 | c.828C>A | synonymous_variant | 0.13 |
tlyA | 1917953 | p.Ala5Asp | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102339 | p.Arg235Leu | missense_variant | 0.2 |
ndh | 2102964 | p.Leu27Ile | missense_variant | 0.17 |
ndh | 2103233 | c.-191G>T | upstream_gene_variant | 0.25 |
katG | 2154359 | p.Ala585Ser | missense_variant | 0.29 |
katG | 2154512 | p.Gly534Trp | missense_variant | 0.25 |
katG | 2154721 | p.Ala464Glu | missense_variant | 0.14 |
katG | 2154745 | p.Ala456Val | missense_variant | 0.17 |
katG | 2155007 | p.Gly369Ser | missense_variant | 0.14 |
katG | 2155632 | c.480A>T | synonymous_variant | 0.29 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.24 |
PPE35 | 2170521 | p.Trp31Leu | missense_variant | 0.17 |
PPE35 | 2170620 | c.-8G>T | upstream_gene_variant | 0.12 |
Rv1979c | 2222846 | p.Gly107Trp | missense_variant | 0.12 |
Rv1979c | 2223051 | p.Glu38Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289723 | c.-482C>T | upstream_gene_variant | 0.12 |
pncA | 2290062 | c.-821G>T | upstream_gene_variant | 0.17 |
kasA | 2518599 | p.Ala162Asp | missense_variant | 0.13 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
kasA | 2519206 | c.1092C>T | synonymous_variant | 0.25 |
eis | 2715519 | c.-187G>T | upstream_gene_variant | 0.14 |
ahpC | 2726610 | p.Pro140Thr | missense_variant | 0.14 |
ahpC | 2726652 | p.Val154Met | missense_variant | 0.13 |
folC | 2747588 | p.Thr4Met | missense_variant | 0.14 |
folC | 2747679 | c.-81C>A | upstream_gene_variant | 0.15 |
pepQ | 2859928 | p.Arg164Leu | missense_variant | 0.17 |
pepQ | 2860024 | p.Arg132Leu | missense_variant | 0.25 |
pepQ | 2860159 | p.Ala87Asp | missense_variant | 0.29 |
ribD | 2987384 | c.546C>T | synonymous_variant | 0.2 |
Rv2752c | 3064874 | p.Gly440Cys | missense_variant | 0.13 |
Rv2752c | 3065702 | p.Thr164Ala | missense_variant | 0.12 |
Rv2752c | 3065824 | p.Pro123Leu | missense_variant | 1.0 |
thyX | 3068154 | c.-209G>A | upstream_gene_variant | 0.17 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3074370 | p.Met34Ile | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087634 | p.Gly272Asp | missense_variant | 0.13 |
fbiD | 3339196 | p.Ala27Ser | missense_variant | 0.17 |
fbiD | 3339383 | p.Pro89His | missense_variant | 0.13 |
Rv3083 | 3448435 | c.-69G>T | upstream_gene_variant | 0.14 |
Rv3083 | 3448803 | c.300C>T | synonymous_variant | 0.18 |
fprA | 3473835 | c.-172T>A | upstream_gene_variant | 0.12 |
fprA | 3473962 | c.-45C>G | upstream_gene_variant | 0.29 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474058 | p.Ala18Ser | missense_variant | 0.33 |
fprA | 3474447 | c.441C>A | synonymous_variant | 0.17 |
fprA | 3474601 | p.Arg199Cys | missense_variant | 0.14 |
fprA | 3474664 | p.Gly220Trp | missense_variant | 0.15 |
fprA | 3474893 | p.Ser296Tyr | missense_variant | 0.12 |
Rv3236c | 3611995 | c.1122C>A | synonymous_variant | 0.2 |
Rv3236c | 3612358 | c.759G>A | synonymous_variant | 0.13 |
Rv3236c | 3612537 | p.Gly194Trp | missense_variant | 0.14 |
Rv3236c | 3613262 | c.-146G>T | upstream_gene_variant | 0.12 |
fbiB | 3640563 | c.-972C>T | upstream_gene_variant | 0.13 |
fbiA | 3640840 | p.Asp100Asn | missense_variant | 0.12 |
fbiA | 3640862 | p.Arg107His | missense_variant | 0.14 |
fbiA | 3640867 | p.Leu109Met | missense_variant | 0.17 |
fbiB | 3642146 | p.Leu204Phe | missense_variant | 0.22 |
fbiB | 3642729 | p.Gly399Cys | missense_variant | 0.18 |
alr | 3840811 | p.Asp204Tyr | missense_variant | 0.14 |
alr | 3840870 | p.Ala184Asp | missense_variant | 0.2 |
alr | 3841089 | p.Ala111Asp | missense_variant | 0.18 |
alr | 3841166 | c.255T>A | synonymous_variant | 0.15 |
alr | 3841193 | c.228C>A | synonymous_variant | 0.14 |
rpoA | 3878565 | c.-58G>A | upstream_gene_variant | 0.25 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4039271 | p.Glu478Asp | missense_variant | 0.13 |
clpC1 | 4039285 | p.Asp474Asn | missense_variant | 0.13 |
clpC1 | 4039762 | p.Gly315Arg | missense_variant | 0.29 |
clpC1 | 4039833 | p.Thr291Ile | missense_variant | 0.18 |
clpC1 | 4040410 | p.Gly99Cys | missense_variant | 0.12 |
clpC1 | 4040717 | c.-13C>T | upstream_gene_variant | 0.13 |
clpC1 | 4040757 | c.-53G>A | upstream_gene_variant | 0.14 |
panD | 4044460 | c.-179G>T | upstream_gene_variant | 0.15 |
embC | 4239678 | c.-185C>A | upstream_gene_variant | 0.4 |
embC | 4240599 | p.Val246Ala | missense_variant | 0.33 |
embC | 4240898 | p.Leu346Ile | missense_variant | 0.17 |
embC | 4241258 | p.Arg466Trp | missense_variant | 0.18 |
embC | 4242060 | p.Ala733Val | missense_variant | 0.14 |
embC | 4242500 | p.Ala880Ser | missense_variant | 0.2 |
embC | 4242639 | p.Trp926* | stop_gained | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242723 | p.Pro954Gln | missense_variant | 0.2 |
embA | 4244204 | p.Met324Ile | missense_variant | 0.22 |
embA | 4244354 | c.1122G>A | synonymous_variant | 0.14 |
embA | 4245919 | p.Trp896Leu | missense_variant | 0.33 |
embA | 4245931 | p.Gly900Val | missense_variant | 0.33 |
embA | 4246375 | p.Gly1048Val | missense_variant | 0.17 |
embB | 4246587 | p.Gly25Glu | missense_variant | 0.14 |
embB | 4246791 | p.Pro93His | missense_variant | 0.29 |
embB | 4248747 | p.Gly745Val | missense_variant | 0.2 |
ubiA | 4269270 | p.Val188Ala | missense_variant | 0.2 |
ubiA | 4269892 | c.-59G>T | upstream_gene_variant | 0.17 |
ubiA | 4269947 | c.-114G>T | upstream_gene_variant | 0.18 |
ethA | 4326068 | p.Arg469Leu | missense_variant | 0.13 |
ethA | 4326681 | p.Leu265Met | missense_variant | 0.17 |
ethA | 4327280 | p.Arg65Leu | missense_variant | 0.17 |
whiB6 | 4338372 | p.Lys50Asn | missense_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |
gid | 4408302 | c.-100A>G | upstream_gene_variant | 0.17 |
gid | 4407912 | c.160_290del | frameshift_variant | 1.0 |