Rv3919c - c.160_290del


Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
0 Sensitive 0 RR-TB 7 HR-TB 299 MDR-TB 360 Pre-XDR-TB 35 XDR-TB 1 Other
lineage Counts
lineage Count
lineage4.3.3 701
lineage2.2.2;lineage4.3.3 1
spoligotype Counts
spoligotype Count
None 702
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1181353 Pre-XDR-TB lineage4.3.3 None
SRR1173200 Pre-XDR-TB lineage4.3.3 None
SRR9971276 MDR-TB lineage4.3.3 None
SRR924216 Pre-XDR-TB lineage4.3.3 None
ERR7361959 Pre-XDR-TB lineage4.3.3 None
SRR857280 MDR-TB lineage4.3.3 None
ERR7737921 MDR-TB lineage4.3.3 None
SRR1173368 Other lineage4.3.3 None
ERR11773739 Pre-XDR-TB lineage4.3.3 None
ERR9992972 MDR-TB lineage4.3.3 None
SRR3055713 Pre-XDR-TB lineage4.3.3 None
ERR11773737 Pre-XDR-TB lineage4.3.3 None
SRR1019172 Pre-XDR-TB lineage4.3.3 None
ERR11773725 Pre-XDR-TB lineage4.3.3 None
SRR1165723 Pre-XDR-TB lineage4.3.3 None
SRR1173532 MDR-TB lineage4.3.3 None
SRR1180330 Pre-XDR-TB lineage4.3.3 None
SRR833078 Pre-XDR-TB lineage4.3.3 za
SRR924208 Pre-XDR-TB lineage4.3.3 None
ERR11773705 Pre-XDR-TB lineage4.3.3 None
ERR11773727 Pre-XDR-TB lineage4.3.3 None
SRR924696 MDR-TB lineage4.3.3 None
ERR7361993 Pre-XDR-TB lineage4.3.3 None
SRR1062843 Pre-XDR-TB lineage4.3.3 None
ERR11773752 Pre-XDR-TB lineage4.3.3 None
ERR4423491 MDR-TB lineage4.3.3 None
ERR4830505 MDR-TB lineage4.3.3 None
ERR7737895 MDR-TB lineage4.3.3 None
ERR9992664 MDR-TB lineage4.3.3 None
ERR9992999 XDR-TB lineage4.3.3 None
SAMN01925638 Pre-XDR-TB lineage4.3.3 None
SAMN01925654 Pre-XDR-TB lineage4.3.3 None
SAMN01925675 MDR-TB lineage4.3.3 None
SRR1011471 Pre-XDR-TB lineage4.3.3 None
SRR11349167 Pre-XDR-TB lineage4.3.3 None
SRR1180219 MDR-TB lineage4.3.3 None
SRR1184324 MDR-TB lineage4.3.3 None
SRR1184366 Pre-XDR-TB lineage4.3.3 None
SRR1184369 MDR-TB lineage4.3.3 None
SRR1184375 Pre-XDR-TB lineage4.3.3 None
SRR1196685 MDR-TB lineage4.3.3 None
SRR833086 Pre-XDR-TB lineage4.3.3 za
SRR9970989 Pre-XDR-TB lineage4.3.3 None
ERR10748167 MDR-TB lineage4.3.3 None
SRR857290 MDR-TB lineage4.3.3 None
SRR857298 MDR-TB lineage4.3.3 None
SRR1184301 Pre-XDR-TB lineage4.3.3 None
SRR1167373 MDR-TB lineage4.3.3 None
SRR1169155 Pre-XDR-TB lineage4.3.3 None
SRR1011483 Pre-XDR-TB lineage4.3.3 None
SRR11349166 Pre-XDR-TB lineage4.3.3 None
SRR1180379 Pre-XDR-TB lineage4.3.3 None
SRR1180395 Pre-XDR-TB lineage4.3.3 None
SRR1181026 MDR-TB lineage4.3.3 None
SRR1184027 MDR-TB lineage4.3.3 None
SRR1184367 MDR-TB lineage4.3.3 None
SRR924225 Pre-XDR-TB lineage4.3.3 None
SRR924232 Pre-XDR-TB lineage4.3.3 None
SRR9970994 Pre-XDR-TB lineage4.3.3 None
SRR9971047 MDR-TB lineage4.3.3 None
SRR857284 MDR-TB lineage4.3.3 None
SRR924235 MDR-TB lineage4.3.3 None
SRR9971053 MDR-TB lineage4.3.3 None
SRR9971374 Pre-XDR-TB lineage4.3.3 None
SRR9971375 Pre-XDR-TB lineage4.3.3 None
SRR29093951 Pre-XDR-TB lineage4.3.3 None
ERR9119926 MDR-TB lineage4.3.3 None
SRR9971332 Pre-XDR-TB lineage4.3.3 None
ERR11068366 MDR-TB lineage4.3.3 None
SRR10868972 MDR-TB lineage4.3.3 None
ERR1873435 Pre-XDR-TB lineage4.3.3 None
ERR9119877 Pre-XDR-TB lineage4.3.3 None
SRR1011474 Pre-XDR-TB lineage4.3.3 None
SRR1172254 Pre-XDR-TB lineage4.3.3 None
SRR1172843 MDR-TB lineage4.3.3 None
SRR1172869 Pre-XDR-TB lineage4.3.3 None
SRR1173795 Pre-XDR-TB lineage4.3.3 None
SRR1169271 Pre-XDR-TB lineage4.3.3 None
SRR1172870 MDR-TB lineage4.3.3 None
SRR1181290 Pre-XDR-TB lineage4.3.3 None
SRR1184315 MDR-TB lineage4.3.3 None
SRR1181404 Pre-XDR-TB lineage4.3.3 None
ERR9993156 XDR-TB lineage4.3.3 None
SAMN02053801 MDR-TB lineage4.3.3 za
ERR9992841 XDR-TB lineage4.3.3 None
SRR1011472 Pre-XDR-TB lineage4.3.3 None
ERR10748477 MDR-TB lineage4.3.3 None
SAMN01925633 MDR-TB lineage4.3.3 None
SRR1184305 MDR-TB lineage4.3.3 None
ERR9119964 MDR-TB lineage4.3.3 None
SRR832996 Pre-XDR-TB lineage4.3.3 None
SRR16156760 Pre-XDR-TB lineage4.3.3 None
SRR1167185 Pre-XDR-TB lineage4.3.3 None
SRR10315627 Pre-XDR-TB lineage4.3.3 None
SRR1167250 MDR-TB lineage4.3.3 None
SRR1167341 Pre-XDR-TB lineage4.3.3 None
SRR1169216 MDR-TB lineage4.3.3 None
SRR1169248 MDR-TB lineage4.3.3 None
SRR1172119 MDR-TB lineage4.3.3 None
SRR1172275 MDR-TB lineage4.3.3 None
SRR10315554 Pre-XDR-TB lineage4.3.3 None
ERR5987341 MDR-TB lineage4.3.3 None
SRR833196 MDR-TB lineage4.3.3 None
SRR847794 Pre-XDR-TB lineage4.3.3 za
SRR9971057 Pre-XDR-TB lineage4.3.3 None
SRR1175055 MDR-TB lineage4.3.3 None
SRR1184382 Pre-XDR-TB lineage4.3.3 None
ERR654967 MDR-TB lineage4.3.3 None
SRR10315624 Pre-XDR-TB lineage4.3.3 None
SRR29056162 Pre-XDR-TB lineage4.3.3 None
ERR9992894 Pre-XDR-TB lineage4.3.3 None
SRR832995 MDR-TB lineage4.3.3 None
SRR857281 MDR-TB lineage4.3.3 None
SRR857287 MDR-TB lineage4.3.3 None
ERR2660500 MDR-TB lineage4.3.3 None
SRR924694 Pre-XDR-TB lineage4.3.3 None
SAMN02586097 MDR-TB lineage4.3.3 za
SRR10315684 Pre-XDR-TB lineage4.3.3 None
SRR10868994 Pre-XDR-TB lineage4.3.3 None
SRR10315605 Pre-XDR-TB lineage4.3.3 None
SRR924205 Pre-XDR-TB lineage4.3.3 None
ERR10748454 MDR-TB lineage4.3.3 None
SRR1173156 MDR-TB lineage4.3.3 None
SRR1180233 Pre-XDR-TB lineage4.3.3 None
SRR1180429 Pre-XDR-TB lineage4.3.3 None
ERR13286115 MDR-TB lineage4.3.3 None
SRR1180435 Pre-XDR-TB lineage4.3.3 None
SAMN02053804 MDR-TB lineage4.3.3 za
SRR9971129 MDR-TB lineage4.3.3 None
ERR13286082 MDR-TB lineage4.3.3 None
ERR7361988 Pre-XDR-TB lineage4.3.3 None
ERR13286202 Pre-XDR-TB lineage4.3.3 None
ERR6052072 MDR-TB lineage4.3.3 None
SRR1167350 Pre-XDR-TB lineage4.3.3 None
SRR833115 Pre-XDR-TB lineage4.3.3 za
SRR1165261 MDR-TB lineage4.3.3 None
ERR7737762 MDR-TB lineage4.3.3 None
SRR1196547 MDR-TB lineage4.3.3 None
SRR9971280 MDR-TB lineage4.3.3 None
SRR833059 Pre-XDR-TB lineage4.3.3 za
SRR924224 Pre-XDR-TB lineage4.3.3 None
SAMN01925686 MDR-TB lineage4.3.3 None
SAMN01925614 Pre-XDR-TB lineage4.3.3 None
SRR833173 Pre-XDR-TB lineage4.3.3 za
ERR7737693 MDR-TB lineage4.3.3 None
SRR833037 MDR-TB lineage4.3.3 None
SRR1140944 MDR-TB lineage4.3.3 None
SRR1173410 HR-TB lineage4.3.3 None
SRR1175325 Pre-XDR-TB lineage4.3.3 None
SRR1181172 Pre-XDR-TB lineage4.3.3 None
SRR1140960 Pre-XDR-TB lineage4.3.3 None
ERR11773740 Pre-XDR-TB lineage4.3.3 None
SRR833033 Pre-XDR-TB lineage4.3.3 None
SRR833106 MDR-TB lineage4.3.3 None
SRR9971230 Pre-XDR-TB lineage4.3.3 None
SRR1169277 MDR-TB lineage4.3.3 None
ERR6052100 MDR-TB lineage4.3.3 None
ERR9119743 MDR-TB lineage4.3.3 None
SAMN01925670 Pre-XDR-TB lineage4.3.3 None
SRR1062842 Pre-XDR-TB lineage4.3.3 None
SRR1180388 Pre-XDR-TB lineage4.3.3 None
SRR1183008 MDR-TB lineage4.3.3 None
SRR1183967 Pre-XDR-TB lineage4.3.3 None
SRR1196525 Pre-XDR-TB lineage4.3.3 None
SRR16156743 Pre-XDR-TB lineage4.3.3 None
SRR924692 Pre-XDR-TB lineage4.3.3 None
SRR9971173 MDR-TB lineage4.3.3 None
ERR11773709 Pre-XDR-TB lineage4.3.3 None
ERR2515743 Pre-XDR-TB lineage4.3.3 None
SRR1180157 Pre-XDR-TB lineage4.3.3 None
ERR9992614 Pre-XDR-TB lineage4.3.3 None
ERR9992704 Pre-XDR-TB lineage4.3.3 None
SAMN02350420 MDR-TB lineage4.3.3 za
SRR1019166 MDR-TB lineage4.3.3 None
SRR1062844 Pre-XDR-TB lineage4.3.3 None
SRR11342637 MDR-TB lineage4.3.3 None
SRR1172095 MDR-TB lineage4.3.3 None
SRR1172793 Pre-XDR-TB lineage4.3.3 None
SRR1180293 Pre-XDR-TB lineage4.3.3 None
SRR1180445 Pre-XDR-TB lineage4.3.3 None
SRR1181198 Pre-XDR-TB lineage4.3.3 None
SRR1184300 XDR-TB lineage4.3.3 None
ERR9992791 XDR-TB lineage4.3.3 None
ERR9993011 XDR-TB lineage4.3.3 None
ERR9993074 Pre-XDR-TB lineage4.3.3 None
SAMN02053803 MDR-TB lineage4.3.3 za
SRR1173199 Pre-XDR-TB lineage4.3.3 None
SRR29093412 Pre-XDR-TB lineage4.3.3 None
SAMN01925661 Pre-XDR-TB lineage4.3.3 None
SAMN02053741 MDR-TB lineage4.3.3 za
SAMN01925634 Pre-XDR-TB lineage4.3.3 za
SRR1062826 Pre-XDR-TB lineage4.3.3 None
SRR11342666 MDR-TB lineage4.3.3 None
SRR1169200 HR-TB lineage4.3.3 None
SRR1172801 XDR-TB lineage4.3.3 None
SRR1196524 MDR-TB lineage4.3.3 None
ERR5987189 MDR-TB lineage4.3.3 None
ERR10748232 MDR-TB lineage4.3.3 None
ERR10748272 Pre-XDR-TB lineage4.3.3 None
ERR7361989 Pre-XDR-TB lineage4.3.3 None
ERR11773747 MDR-TB lineage4.3.3 None
SRR29093892 MDR-TB lineage4.3.3 None
SRR1180403 Pre-XDR-TB lineage4.3.3 None
SRR9971090 Pre-XDR-TB lineage4.3.3 None
SRR9971228 Pre-XDR-TB lineage4.3.3 None
SRR1184359 MDR-TB lineage4.3.3 None
ERR551452 Pre-XDR-TB lineage4.3.3 None
SRR29056158 MDR-TB lineage4.3.3 None
SRR16370411 MDR-TB lineage4.3.3 None
SAMN02586022 MDR-TB lineage4.3.3 za
SAMN01925658 Pre-XDR-TB lineage4.3.3 None
SRR1062835 Pre-XDR-TB lineage4.3.3 None
SRR9971241 Pre-XDR-TB lineage4.3.3 None
ERR5987371 MDR-TB lineage4.3.3 None
SRR833114 MDR-TB lineage4.3.3 None
SRR833121 Pre-XDR-TB lineage4.3.3 None
SRR924219 Pre-XDR-TB lineage4.3.3 None
SRR1173449 Pre-XDR-TB lineage4.3.3 None
SRR11342650 MDR-TB lineage4.3.3 None
SRR833162 MDR-TB lineage4.3.3 None
ERR7737731 MDR-TB lineage4.3.3 None
SRR1173201 MDR-TB lineage4.3.3 None
SRR1184336 Pre-XDR-TB lineage4.3.3 None
SRR1196511 Pre-XDR-TB lineage4.3.3 None
ERR9992635 XDR-TB lineage4.3.3 None
SRR1196510 Pre-XDR-TB lineage4.3.3 None
SRR833130 Pre-XDR-TB lineage4.3.3 None
ERR9992673 MDR-TB lineage4.3.3 None
SRR9970997 Pre-XDR-TB lineage4.3.3 None
SRR16156731 Pre-XDR-TB lineage4.3.3 None
ERR9992893 XDR-TB lineage4.3.3 None
SRR10315698 MDR-TB lineage4.3.3 None
SRR1062827 Pre-XDR-TB lineage4.3.3 None
SRR1169191 Pre-XDR-TB lineage4.3.3 None
SAMN02053744 Pre-XDR-TB lineage4.3.3 None
SAMN01925653 Pre-XDR-TB lineage4.3.3 None
ERR13288983 MDR-TB lineage4.3.3 None
ERR13289323 Pre-XDR-TB lineage4.3.3 None
ERR10748273 Pre-XDR-TB lineage4.3.3 None
SRR10315655 Pre-XDR-TB lineage4.3.3 None
SRR1062855 MDR-TB lineage4.3.3 None
ERR13286130 Pre-XDR-TB lineage4.3.3 None
SRR1172835 MDR-TB lineage4.3.3 None
SRR1173731 MDR-TB lineage4.3.3 None
SRR1180353 Pre-XDR-TB lineage4.3.3 None
ERR13286088 MDR-TB lineage4.3.3 None
ERR10748215 MDR-TB lineage4.3.3 None
ERR6362755 MDR-TB lineage4.3.3 None
ERR13289260 Pre-XDR-TB lineage4.3.3 None
SRR11349192 Pre-XDR-TB lineage4.3.3 None
ERR13286043 Pre-XDR-TB lineage4.3.3 None
ERR2516008 MDR-TB lineage4.3.3 None
SRR1175064 HR-TB lineage4.3.3 None
ERR9120007 MDR-TB lineage4.3.3 None
ERR9992957 XDR-TB lineage4.3.3 None
ERR13286047 Pre-XDR-TB lineage4.3.3 None
ERR13286042 Pre-XDR-TB lineage4.3.3 None
ERR13288955 XDR-TB lineage4.3.3 None
ERR9992871 XDR-TB lineage4.3.3 None
ERR9993117 XDR-TB lineage4.3.3 None
ERR9993080 MDR-TB lineage4.3.3 None
SRR1181220 Pre-XDR-TB lineage4.3.3 None
ERR9993120 XDR-TB lineage4.3.3 None
ERR9993243 XDR-TB lineage4.3.3 None
ERR9992827 MDR-TB lineage4.3.3 None
ERR9992695 XDR-TB lineage4.3.3 None
SRR10315604 Pre-XDR-TB lineage4.3.3 None
ERR9992976 MDR-TB lineage4.3.3 None
ERR9993018 XDR-TB lineage4.3.3 None
ERR9992915 XDR-TB lineage4.3.3 None
ERR9993253 Pre-XDR-TB lineage4.3.3 None
ERR9993235 XDR-TB lineage4.3.3 None
ERR2515286 Pre-XDR-TB lineage4.3.3 za
ERR13288988 MDR-TB lineage4.3.3 None
ERR9992651 MDR-TB lineage4.3.3 None
ERR9992629 Pre-XDR-TB lineage4.3.3 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR1196477 Pre-XDR-TB lineage4.3.3 None
ERR9993081 XDR-TB lineage4.3.3 None
SAMN02350486 Pre-XDR-TB lineage4.3.3 za
SRR1172858 MDR-TB lineage4.3.3 None
SRR1165698 Pre-XDR-TB lineage4.3.3 None
SRR1167359 MDR-TB lineage4.3.3 None
SRR1180281 Pre-XDR-TB lineage4.3.3 None
SAMN01925651 Pre-XDR-TB lineage4.3.3 None
SRR1011463 Pre-XDR-TB lineage4.3.3 None
SRR1169184 MDR-TB lineage4.3.3 None
SRR1172727 MDR-TB lineage4.3.3 None
SRR1172889 MDR-TB lineage4.3.3 None
SRR924233 Pre-XDR-TB lineage4.3.3 None
SRR1181376 Pre-XDR-TB lineage4.3.3 None
ERR9119976 MDR-TB lineage4.3.3 None
ERR7362014 Pre-XDR-TB lineage4.3.3 None
SRR1184115 Pre-XDR-TB lineage4.3.3 None
SRR1184321 MDR-TB lineage4.3.3 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1062822 Pre-XDR-TB lineage4.3.3 None
SRR847788 Pre-XDR-TB lineage4.3.3 za
SRR924223 Pre-XDR-TB lineage4.3.3 None
SRR1062823 Pre-XDR-TB lineage4.3.3 None
ERR10748245 MDR-TB lineage4.3.3 None
SRR958195 MDR-TB lineage4.3.3 None
ERR495012 MDR-TB lineage4.3.3 None
ERR7737708 MDR-TB lineage4.3.3 None
ERR5987211 MDR-TB lineage4.3.3 None
SRR833097 MDR-TB lineage4.3.3 None
SRR1019171 Pre-XDR-TB lineage4.3.3 None
SRR10315625 Pre-XDR-TB lineage4.3.3 None
SAMN01925667 Pre-XDR-TB lineage4.3.3 None
SAMN01828249 MDR-TB lineage4.3.3 za
ERR10748177 Pre-XDR-TB lineage4.3.3 None
SRR9970987 Pre-XDR-TB lineage4.3.3 None
SRR1196515 Pre-XDR-TB lineage4.3.3 None
SRR1184022 MDR-TB lineage4.3.3 None
SRR857291 MDR-TB lineage4.3.3 None
ERR9993123 XDR-TB lineage4.3.3 None
SRR1184335 HR-TB lineage4.3.3 None
SRR16156851 Pre-XDR-TB lineage4.3.3 None
SRR6855694 MDR-TB lineage4.3.3 None
SRR1184378 Pre-XDR-TB lineage4.3.3 None
SRR1184299 MDR-TB lineage4.3.3 None
SAMN02350411 Pre-XDR-TB lineage4.3.3 za
SRR1169193 MDR-TB lineage4.3.3 None
SRR1173000 MDR-TB lineage4.3.3 None
SRR29056335 MDR-TB lineage4.3.3 None
ERR13286036 XDR-TB lineage4.3.3 None
ERR10748169 MDR-TB lineage4.3.3 None
SRR1011462 Pre-XDR-TB lineage4.3.3 None
SRR1140932 MDR-TB lineage4.3.3 None
SRR833099 MDR-TB lineage4.3.3 None
SRR29093411 Pre-XDR-TB lineage4.3.3 None
SRR9971096 MDR-TB lineage4.3.3 None
SRR9971176 MDR-TB lineage4.3.3 None
ERR11773744 MDR-TB lineage4.3.3 None
SRR833186 MDR-TB lineage4.3.3 None
SRR847775 Pre-XDR-TB lineage4.3.3 za
SRR1173482 MDR-TB lineage4.3.3 None
SRR833110 MDR-TB lineage4.3.3 None
SRR1019134 MDR-TB lineage4.3.3 None
SRR1062834 Pre-XDR-TB lineage4.3.3 None
ERR4831550 Pre-XDR-TB lineage4.3.3 None
SRR1181145 Pre-XDR-TB lineage4.3.3 None
SRR1172323 Pre-XDR-TB lineage4.3.3 None
SRR1173094 MDR-TB lineage4.3.3 None
SRR29055698 Pre-XDR-TB lineage4.3.3 None
SRR1165633 MDR-TB lineage4.3.3 None
SRR1165327 MDR-TB lineage4.3.3 None
SRR1172980 HR-TB lineage4.3.3 None
SRR1181170 Pre-XDR-TB lineage4.3.3 None
SRR1183042 Pre-XDR-TB lineage4.3.3 None
SRR29055526 MDR-TB lineage4.3.3 None
SRR924222 Pre-XDR-TB lineage4.3.3 None
SRR847787 Pre-XDR-TB lineage4.3.3 za
SRR924231 Pre-XDR-TB lineage4.3.3 None
SRR1169175 MDR-TB lineage4.3.3 None
SRR29055950 Pre-XDR-TB lineage4.3.3 None
SRR9971285 XDR-TB lineage4.3.3 None
SRR16156864 Pre-XDR-TB lineage4.3.3 None
SRR9971051 Pre-XDR-TB lineage4.3.3 None
SRR1062840 Pre-XDR-TB lineage4.3.3 None
SRR1173448 Pre-XDR-TB lineage4.3.3 None
SRR1173072 MDR-TB lineage4.3.3 None
ERR9992647 XDR-TB lineage4.3.3 None
ERR13260891 MDR-TB lineage4.3.3 None
SRR29055619 MDR-TB lineage4.3.3 None
SRR924213 Pre-XDR-TB lineage4.3.3 None
ERR7361977 Pre-XDR-TB lineage4.3.3 None
ERR9993116 MDR-TB lineage4.3.3 None
SRR1011454 Pre-XDR-TB lineage4.3.3 None
SRR1180441 Pre-XDR-TB lineage4.3.3 None
SRR29093286 Pre-XDR-TB lineage4.3.3 None
SRR1140946 MDR-TB lineage4.3.3 None
SRR1180190 Pre-XDR-TB lineage4.3.3 None
ERR9119972 MDR-TB lineage4.3.3 None
ERR13289007 Pre-XDR-TB lineage4.3.3 None
SRR1011452 Pre-XDR-TB lineage4.3.3 None
SRR1011453 Pre-XDR-TB lineage4.3.3 None
ERR5987366 MDR-TB lineage4.3.3 None
ERR9120140 MDR-TB lineage4.3.3 None
ERR10748074 Pre-XDR-TB lineage4.3.3 None
SRR16157125 Pre-XDR-TB lineage4.3.3 None
SRR1173349 Pre-XDR-TB lineage4.3.3 None
SRR1173180 Pre-XDR-TB lineage4.3.3 None
ERR7737634 Pre-XDR-TB lineage4.3.3 None
SRR1181355 Pre-XDR-TB lineage4.3.3 None
ERR13288943 XDR-TB lineage4.3.3 None
SRR1184328 MDR-TB lineage4.3.3 None
SRR1196555 MDR-TB lineage4.3.3 None
ERR9993093 MDR-TB lineage4.3.3 None
ERR654964 MDR-TB lineage4.3.3 None
SRR10315609 Pre-XDR-TB lineage4.3.3 None
SRR1181391 Pre-XDR-TB lineage4.3.3 None
SRR16156686 Pre-XDR-TB lineage4.3.3 None
SRR16156688 Pre-XDR-TB lineage4.3.3 None
SRR10315589 MDR-TB lineage4.3.3 None
SRR1181218 Pre-XDR-TB lineage4.3.3 None
SRR1184326 Pre-XDR-TB lineage4.3.3 None
SRR16156753 Pre-XDR-TB lineage4.3.3 None
SRR9971233 MDR-TB lineage4.3.3 None
SRR1196754 MDR-TB lineage4.3.3 None
SRR1165662 MDR-TB lineage4.3.3 None
SRR1184337 MDR-TB lineage4.3.3 None
ERR3132265 MDR-TB lineage4.3.3 None
SRR833024 Pre-XDR-TB lineage4.3.3 None
SRR10315583 Pre-XDR-TB lineage4.3.3 None
ERR13288921 Pre-XDR-TB lineage4.3.3 None
SRR1184342 Pre-XDR-TB lineage4.3.3 None
SRR1173560 Pre-XDR-TB lineage4.3.3 None
ERR9119927 MDR-TB lineage4.3.3 None
ERR1034984 Pre-XDR-TB lineage4.3.3 za
SRR1196539 MDR-TB lineage4.3.3 None
SRR29093970 Pre-XDR-TB lineage4.3.3 None
SRR1165660 Pre-XDR-TB lineage4.3.3 None
SRR1175307 XDR-TB lineage4.3.3 None
SRR1183043 Pre-XDR-TB lineage4.3.3 None
SRR924212 Pre-XDR-TB lineage4.3.3 None
SRR833074 MDR-TB lineage4.3.3 None
SRR1011476 MDR-TB lineage4.3.3 None
SRR1011458 Pre-XDR-TB lineage4.3.3 None
SRR1062854 Pre-XDR-TB lineage4.3.3 None
SRR1062846 Pre-XDR-TB lineage4.3.3 None
SRR1062839 Pre-XDR-TB lineage4.3.3 None
SRR1180369 Pre-XDR-TB lineage4.3.3 None
SRR1181219 Pre-XDR-TB lineage4.3.3 None
SRR1181357 Pre-XDR-TB lineage4.3.3 None
ERR9992661 MDR-TB lineage4.3.3 None
SRR1011456 Pre-XDR-TB lineage4.3.3 None
SRR16156840 Pre-XDR-TB lineage4.3.3 None
SRR29096307 Pre-XDR-TB lineage4.3.3 None
SRR29093230 Pre-XDR-TB lineage4.3.3 None
ERR9119963 MDR-TB lineage4.3.3 None
SRR1181396 Pre-XDR-TB lineage4.3.3 None
SAMN02053806 MDR-TB lineage4.3.3 za
SRR9971182 MDR-TB lineage4.3.3 None
ERR7361978 Pre-XDR-TB lineage4.3.3 None
SRR1196536 Pre-XDR-TB lineage4.3.3 None
ERR5987411 Pre-XDR-TB lineage4.3.3 None
SRR833125 Pre-XDR-TB lineage4.3.3 None
ERR10748246 MDR-TB lineage4.3.3 None
SRR10315653 Pre-XDR-TB lineage4.3.3 None
SRR1167380 MDR-TB lineage4.3.3 None
SRR1173491 Pre-XDR-TB lineage4.3.3 None
SRR10315686 Pre-XDR-TB lineage4.3.3 None
SRR1181262 Pre-XDR-TB lineage4.3.3 None
SRR1173142 Pre-XDR-TB lineage4.3.3 None
SRR1183969 MDR-TB lineage4.3.3 None
SRR1196686 MDR-TB lineage4.3.3 None
SRR1184331 Pre-XDR-TB lineage4.3.3 None
SRR9971179 XDR-TB lineage4.3.3 None
SRR1180301 Pre-XDR-TB lineage4.3.3 None
SRR11349177 Pre-XDR-TB lineage4.3.3 None
SRR9970990 Pre-XDR-TB lineage4.3.3 None
SRR1196484 MDR-TB lineage4.3.3 None
SRR1196576 Pre-XDR-TB lineage4.3.3 None
SRR16156761 Pre-XDR-TB lineage4.3.3 None
SRR847777 Pre-XDR-TB lineage4.3.3 za
SRR833177 MDR-TB lineage4.3.3 None
ERR10748187 Pre-XDR-TB lineage4.3.3 None
SRR857299 MDR-TB lineage4.3.3 None
SRR1165277 MDR-TB lineage4.3.3 None
SRR833023 Pre-XDR-TB lineage4.3.3 None
SRR833040 MDR-TB lineage4.3.3 za
SAMN01925617 Pre-XDR-TB lineage4.3.3 None
SRR1173784 MDR-TB lineage4.3.3 None
SRR857294 MDR-TB lineage4.3.3 None
SRR833064 Pre-XDR-TB lineage4.3.3 None
SRR847793 Pre-XDR-TB lineage4.3.3 None
SAMN01925636 Pre-XDR-TB lineage4.3.3 None
SRR924215 Pre-XDR-TB lineage4.3.3 None
SAMN01925657 Pre-XDR-TB lineage4.3.3 None
SRR1062828 Pre-XDR-TB lineage4.3.3 None
SRR9971153 Pre-XDR-TB lineage4.3.3 None
SRR6856009 MDR-TB lineage4.3.3 None
ERR5987284 MDR-TB lineage4.3.3 None
SRR1173039 Pre-XDR-TB lineage4.3.3 None
ERR9120082 MDR-TB lineage4.3.3 None
ERR552049 MDR-TB lineage4.3.3 None
SRR1184320 Pre-XDR-TB lineage4.3.3 None
SRR833140 MDR-TB lineage4.3.3 None
SRR1173101 Pre-XDR-TB lineage4.3.3 None
SAMN01925618 Pre-XDR-TB lineage4.3.3 None
ERR11773750 Pre-XDR-TB lineage4.3.3 None
SRR1165644 MDR-TB lineage4.3.3 None
SRR1167285 MDR-TB lineage4.3.3 None
SRR6981952 MDR-TB lineage4.3.3 None
SRR833163 MDR-TB lineage4.3.3 None
ERR7737750 MDR-TB lineage4.3.3 None
SRR847778 Pre-XDR-TB lineage4.3.3 za
SRR1011484 MDR-TB lineage4.3.3 None
SRR16156689 Pre-XDR-TB lineage4.3.3 None
ERR9992646 MDR-TB lineage4.3.3 None
SRR1062824 Pre-XDR-TB lineage4.3.3 None
SRR1180356 Pre-XDR-TB lineage4.3.3 None
SRR9971095 Pre-XDR-TB lineage4.3.3 None
SRR9971225 MDR-TB lineage4.3.3 None
SRR9971243 Pre-XDR-TB lineage4.3.3 None
SRR1165323 MDR-TB lineage4.3.3 None
ERR2660503 MDR-TB lineage4.3.3 None
ERR13267430 Pre-XDR-TB lineage4.3.3 None
SRR1174833 MDR-TB lineage4.3.3 None
ERR6362466 MDR-TB lineage4.3.3 None
SAMN01925640 Pre-XDR-TB lineage4.3.3 None
SRR1196542 XDR-TB lineage4.3.3 None
SRR1196670 MDR-TB lineage4.3.3 None
SRR1062833 MDR-TB lineage4.3.3 None
SRR1180161 MDR-TB lineage4.3.3 None
ERR9120006 MDR-TB lineage4.3.3 None
ERR9120141 MDR-TB lineage4.3.3 None
SRR16156695 Pre-XDR-TB lineage4.3.3 None
SRR1167335 MDR-TB lineage4.3.3 None
ERR5987340 MDR-TB lineage4.3.3 None
SRR1180433 Pre-XDR-TB lineage4.3.3 None
ERR13260876 MDR-TB lineage4.3.3 None
SRR1181008 Pre-XDR-TB lineage4.3.3 None
SRR1184310 MDR-TB lineage4.3.3 None
SRR1196671 MDR-TB lineage4.3.3 None
ERR9119975 MDR-TB lineage4.3.3 None
SRR1167360 Pre-XDR-TB lineage4.3.3 None
SRR29093243 Pre-XDR-TB lineage4.3.3 None
ERR5987353 MDR-TB lineage4.3.3 None
SRR29093616 Pre-XDR-TB lineage4.3.3 None
ERR5987215 MDR-TB lineage4.3.3 None
ERR4423490 MDR-TB lineage4.3.3 None
SRR1140949 Pre-XDR-TB lineage4.3.3 None
ERR10748489 MDR-TB lineage4.3.3 None
SAMN01925659 Pre-XDR-TB lineage4.3.3 None
SRR9971273 MDR-TB lineage4.3.3 None
ERR7361962 Pre-XDR-TB lineage4.3.3 None
SAMN01925650 Pre-XDR-TB lineage4.3.3 None
ERR7737888 MDR-TB lineage4.3.3 None
SRR1173403 MDR-TB lineage4.3.3 None
SRR9971170 MDR-TB lineage4.3.3 None
SRR3055712 MDR-TB lineage4.3.3 None
SRR1167289 MDR-TB lineage4.3.3 None
SRR1169212 Pre-XDR-TB lineage4.3.3 None
SRR6855944 MDR-TB lineage4.3.3 None
SRR1173107 MDR-TB lineage4.3.3 None
SRR1173555 MDR-TB lineage4.3.3 None
SRR1173780 Pre-XDR-TB lineage4.3.3 None
SRR1167331 MDR-TB lineage4.3.3 None
SRR1196523 MDR-TB lineage4.3.3 None
SRR29055678 Pre-XDR-TB lineage4.3.3 None
SRR1184293 MDR-TB lineage4.3.3 None
SRR1169276 MDR-TB lineage4.3.3 None
SRR1196518 MDR-TB lineage4.3.3 None
SRR1173442 MDR-TB lineage4.3.3 None
SRR1172816 MDR-TB lineage4.3.3 None
SRR1011461 MDR-TB lineage4.3.3 None
SRR9971336 Pre-XDR-TB lineage4.3.3 None
SRR832980 MDR-TB lineage4.3.3 None
ERR4423544 MDR-TB lineage4.3.3 None
SRR9971040 Pre-XDR-TB lineage4.3.3 None
SRR833123 MDR-TB lineage4.3.3 None
SRR9971335 Pre-XDR-TB lineage4.3.3 None
SRR1196587 MDR-TB lineage4.3.3 None
SRR29093691 Pre-XDR-TB lineage4.3.3 None
SRR29094027 MDR-TB lineage4.3.3 None
SAMN02586050 MDR-TB lineage4.3.3 za
ERR11775618 MDR-TB lineage4.3.3 None
SRR833191 Pre-XDR-TB lineage4.3.3 None
SRR9971126 Pre-XDR-TB lineage4.3.3 None
ERR9119971 MDR-TB lineage4.3.3 None
SAMN02585982 MDR-TB lineage4.3.3 None
SRR9971039 XDR-TB lineage4.3.3 None
SRR1172140 MDR-TB lineage4.3.3 None
SAMN01925641 Pre-XDR-TB lineage4.3.3 None
ERR13260890 MDR-TB lineage4.3.3 None
SRR833048 MDR-TB lineage4.3.3 None
ERR11773708 Pre-XDR-TB lineage4.3.3 None
ERR11773720 Pre-XDR-TB lineage4.3.3 None
SRR847782 Pre-XDR-TB lineage4.3.3 za
SRR9971187 Pre-XDR-TB lineage4.3.3 None
SRR1173574 MDR-TB lineage4.3.3 None
SRR9971180 XDR-TB lineage4.3.3 None
SRR924697 Pre-XDR-TB lineage4.3.3 None
SRR1196530 Pre-XDR-TB lineage4.3.3 None
SRR924214 Pre-XDR-TB lineage4.3.3 None
SRR3055714 Pre-XDR-TB lineage4.3.3 None
SRR1173023 MDR-TB lineage4.3.3 None
SRR1196533 Pre-XDR-TB lineage4.3.3 None
SRR1175065 Pre-XDR-TB lineage4.3.3 None
SRR833149 MDR-TB lineage4.3.3 None
SRR1196504 Pre-XDR-TB lineage4.3.3 None
SRR10315611 Pre-XDR-TB lineage4.3.3 None
SRR29056095 Pre-XDR-TB lineage4.3.3 None
SRR847792 Pre-XDR-TB lineage4.3.3 za
ERR9992620 MDR-TB lineage4.3.3 None
SRR1165625 MDR-TB lineage4.3.3 None
SRR1144815 Pre-XDR-TB lineage4.3.3 None
SRR10869188 Pre-XDR-TB lineage4.3.3 None
ERR9120081 MDR-TB lineage4.3.3 None
SRR1019170 MDR-TB lineage4.3.3 None
SRR1062825 Pre-XDR-TB lineage4.3.3 None
SAMN02053807 Pre-XDR-TB lineage4.3.3 None
SAMN02350414 Pre-XDR-TB lineage4.3.3 za
SRR1144793 MDR-TB lineage4.3.3 None
SRR10315612 Pre-XDR-TB lineage4.3.3 None
SRR1140955 Pre-XDR-TB lineage4.3.3 None
ERR6362445 MDR-TB lineage4.3.3 None
ERR9993040 Pre-XDR-TB lineage4.3.3 None
SAMN02053768 MDR-TB lineage4.3.3 za
ERR7361961 Pre-XDR-TB lineage4.3.3 None
ERR7361976 MDR-TB lineage4.3.3 None
SRR1165640 MDR-TB lineage4.3.3 None
SRR857286 MDR-TB lineage4.3.3 None
SRR924230 Pre-XDR-TB lineage4.3.3 None
SRR1173391 Pre-XDR-TB lineage4.3.3 None
SRR1180328 Pre-XDR-TB lineage4.3.3 None
SRR1180422 Pre-XDR-TB lineage4.3.3 None
SRR1181260 Pre-XDR-TB lineage4.3.3 None
SRR1184374 MDR-TB lineage4.3.3 None
SRR1175351 MDR-TB lineage4.3.3 None
SRR1173561 Pre-XDR-TB lineage4.3.3 None
SRR1180302 MDR-TB lineage4.3.3 None
SRR1184304 MDR-TB lineage4.3.3 None
SRR1181321 Pre-XDR-TB lineage4.3.3 None
SRR1173080 MDR-TB lineage4.3.3 None
ERR10748480 MDR-TB lineage4.3.3 None
ERR7737638 MDR-TB lineage4.3.3 None
SRR1062847 MDR-TB lineage4.3.3 None
ERR279481 MDR-TB lineage4.3.3 None
SRR29096324 Pre-XDR-TB lineage4.3.3 None
SRR29055959 Pre-XDR-TB lineage4.3.3 None
SRR11342641 MDR-TB lineage4.3.3 None
SRR833067 MDR-TB lineage4.3.3 None
SRR857283 MDR-TB lineage4.3.3 None
SRR29053131 MDR-TB lineage4.3.3 None
ERR9993090 XDR-TB lineage4.3.3 None
SRR9971123 Pre-XDR-TB lineage4.3.3 None
SRR9971131 MDR-TB lineage4.3.3 None
SRR9971240 Pre-XDR-TB lineage4.3.3 None
ERR9993127 MDR-TB lineage4.3.3 None
ERR9992615 XDR-TB lineage4.3.3 None
SRR1196492 MDR-TB lineage4.3.3 None
SRR29093176 Pre-XDR-TB lineage4.3.3 None
SRR29056339 MDR-TB lineage4.3.3 None
SRR16156723 Pre-XDR-TB lineage4.3.3 None
SRR924227 Pre-XDR-TB lineage4.3.3 None
SRR1183101 Pre-XDR-TB lineage4.3.3 None
SRR1173294 Pre-XDR-TB lineage4.3.3 None
SAMN01925669 Pre-XDR-TB lineage4.3.3 None
SAMN01925666 Pre-XDR-TB lineage4.3.3 None
SRR29096344 MDR-TB lineage2.2.2;lineage4.3.3 None
ERR4423543 MDR-TB lineage4.3.3 None
ERR473327 Pre-XDR-TB lineage4.3.3 None
ERR7361975 Pre-XDR-TB lineage4.3.3 None
SRR1173276 XDR-TB lineage4.3.3 None
SRR1173396 MDR-TB lineage4.3.3 None
SRR1181138 Pre-XDR-TB lineage4.3.3 None
SRR1183125 MDR-TB lineage4.3.3 None
SRR1184297 Pre-XDR-TB lineage4.3.3 None
SRR1184368 MDR-TB lineage4.3.3 None
SRR1184389 MDR-TB lineage4.3.3 None
SRR924234 Pre-XDR-TB lineage4.3.3 None
SRR847801 Pre-XDR-TB lineage4.3.3 None
SRR8758885 Pre-XDR-TB lineage4.3.3 None
SRR833029 Pre-XDR-TB lineage4.3.3 None
SRR1180407 MDR-TB lineage4.3.3 None
SRR1184319 MDR-TB lineage4.3.3 None
ERR9992884 MDR-TB lineage4.3.3 None
SRR1184333 Pre-XDR-TB lineage4.3.3 None
ERR13260872 MDR-TB lineage4.3.3 None
SAMN01925615 Pre-XDR-TB lineage4.3.3 None
SRR1011468 Pre-XDR-TB lineage4.3.3 None
SAMN01925660 Pre-XDR-TB lineage4.3.3 None
ERR7361957 Pre-XDR-TB lineage4.3.3 None
ERR7361964 Pre-XDR-TB lineage4.3.3 None
ERR9992621 MDR-TB lineage4.3.3 None
SRR1165716 MDR-TB lineage4.3.3 None
SRR9971227 Pre-XDR-TB lineage4.3.3 None
SRR1196568 HR-TB lineage4.3.3 None
ERR9993020 XDR-TB lineage4.3.3 None
SRR833006 MDR-TB lineage4.3.3 None
SRR833060 MDR-TB lineage4.3.3 None
ERR7361984 Pre-XDR-TB lineage4.3.3 None
SRR833080 MDR-TB lineage4.3.3 None
ERR13260894 Pre-XDR-TB lineage4.3.3 None
SRR10315699 MDR-TB lineage4.3.3 None
SRR832991 Pre-XDR-TB lineage4.3.3 None
ERR7361995 Pre-XDR-TB lineage4.3.3 None
SRR9971303 Pre-XDR-TB lineage4.3.3 None
SRR1180258 Pre-XDR-TB lineage4.3.3 None
SRR1181174 Pre-XDR-TB lineage4.3.3 None
SRR857296 MDR-TB lineage4.3.3 None
SRR1196496 MDR-TB lineage4.3.3 None
SRR833013 Pre-XDR-TB lineage4.3.3 None
SRR833058 Pre-XDR-TB lineage4.3.3 za
SRR924226 Pre-XDR-TB lineage4.3.3 None
SRR9971169 Pre-XDR-TB lineage4.3.3 None
SRR1196575 Pre-XDR-TB lineage4.3.3 None
ERR10748210 MDR-TB lineage4.3.3 None
SRR6855820 HR-TB lineage4.3.3 None
SRR16156718 Pre-XDR-TB lineage4.3.3 None
SRR833137 MDR-TB lineage4.3.3 None
ERR4831552 MDR-TB lineage4.3.3 None
SRR1169147 MDR-TB lineage4.3.3 None
ERR5987399 MDR-TB lineage4.3.3 None
SRR924228 Pre-XDR-TB lineage4.3.3 None
ERR9993015 MDR-TB lineage4.3.3 None
ERR9992941 MDR-TB lineage4.3.3 None
SAMN01925639 Pre-XDR-TB lineage4.3.3 None
SAMN02350440 Pre-XDR-TB lineage4.3.3 za