EBG00000313339 - n.2217C>T
Drug resistance types
17 Sensitive
3 RR-TB
53 HR-TB
26 MDR-TB
33 Pre-XDR-TB
0 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 13 |
| lineage4.9 | 16 |
| lineage3.1.2 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.1.2.1 | 8 |
| lineage3.1.1 | 5 |
| lineage1.1.2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage2.2 | 20 |
| lineage2.2.1 | 31 |
| lineage2.2.2 | 18 |
| 16 | |
| lineage4 | 5 |
| lineage4.9;lineage2.2 | 1 |
| lineage4;lineage2.2.2 | 1 |
| lineage4.4.2 | 3 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage4.5 | 3 |
| lineage4.9;lineage2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.4 | 2 |
| lineage4.3.3 | 5 |
| lineage4.3.4 | 1 |
| lineage4.8 | 6 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage1.1 | 2 |
| lineage4.1.1.3 | 5 |
| La1.8.2 | 1 |
| lineage4.1.1.3.1 | 4 |
| lineage4.6.2.2 | 1 |
| lineage4.9.1 | 1 |
| lineage3.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.1.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.3.2 | 1 |
| La1.7.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 191 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9117728 | Other | lineage3 | None | ERR736850 | Sensitive | lineage4.9 | None | ERR9117714 | Other | lineage3.1.2 | None | ERR6197041 | MDR-TB | lineage4.3.4.2 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117730 | Other | lineage1.1.2 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013598 | HR-TB | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013599 | HR-TB | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013617 | MDR-TB | None | SRR1013618 | MDR-TB | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048885 | MDR-TB | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048982 | HR-TB | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049041 | MDR-TB | None | SRR1049027 | Pre-XDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1172753 | MDR-TB | lineage4.4.1.1.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1172713 | MDR-TB | lineage4.4 | None | SRR1175304 | MDR-TB | lineage4.3.3 | None | SRR1173113 | RR-TB | lineage4.3.4 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1173720 | Other | lineage4.9 | None | SRR1175073 | Other | lineage4.9 | None | SRR1172816 | MDR-TB | lineage4.3.3 | None | SRR1173074 | Other | lineage4.9 | None | SRR1173416 | Other | lineage4.9 | None | SRR1173764 | Sensitive | lineage4.9 | None | SRR12634543 | Sensitive | lineage4.8 | None | SRR1184379 | Other | lineage4 | None | SRR11972323 | RR-TB | lineage1.1.3.2 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | SRR12199428 | Sensitive | lineage4.9;lineage1.1 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | SRR14164405 | Sensitive | lineage4.3.4.2 | None | SRR14782555 | Pre-XDR-TB | lineage2.2.1 | None | SRR15014764 | MDR-TB | lineage1.1.2 | None | SRR15296951 | Other | La1.8.2 | None | SRR18213684 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR19303792 | Sensitive | lineage4.1.2.1 | None | ERR1750905 | Sensitive | lineage4.3.3 | za | SRR3675288 | Other | lineage3 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | ERR216901 | Other | lineage3.1.1 | None | SRR3675557 | Other | lineage4.9 | None | ERR2229133 | Sensitive | lineage4.8 | None | ERR216928 | Other | lineage4.9.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | ERR2229336 | Other | lineage4.8 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | ERR4816755 | Other | lineage4.1.1.3 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02585982 | MDR-TB | lineage4.3.3 | None | SRR5073829 | Sensitive | lineage2.2.1 | vn | ERR245790 | Sensitive | None | SAMN02360577 | HR-TB | lineage3 | None | ERR2512867 | Sensitive | lineage4.1.2.1 | gb | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045778 | Other | lineage3.1 | None | ERR4820845 | MDR-TB | lineage4.8 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6046152 | Other | lineage4.9 | None | SRR6044774 | Other | lineage3 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6044787 | Other | lineage4.4 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044975 | Other | lineage3 | gb | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR6045024 | Other | lineage4.1.1.2 | None | SRR6045162 | Sensitive | lineage4.9 | None | SRR6045110 | Other | lineage3 | None | SRR6045232 | Other | lineage4.1.1.3 | gb | SRR6045164 | Other | lineage4.1.2.1 | None | SRR6045178 | Other | lineage3 | None | SRR6045248 | Other | lineage3.1.1 | None | SRR6046481 | Other | lineage4.1.1.3.1 | None | SRR6045289 | Other | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6045379 | Other | None | SRR6046246 | Other | lineage3 | None | SRR6046273 | Other | lineage3.1.2 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046558 | Other | lineage3 | gb | SRR6046739 | Other | lineage1.1.2 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6896352 | Sensitive | lineage4.1.1.3 | None | ERR3148546 | Other | lineage4.3.2 | None | SRR6785282 | Other | lineage4.3.3 | None | SRR7131030 | Other | lineage4.1.2.1 | None | SRR6896534 | Sensitive | None | ERR1063855 | Other | lineage4 | None | SRR7131169 | Other | lineage4.1.2.1 | None | ERR323041 | HR-TB | None | SRR7131123 | Other | lineage4.8 | None | ERR10796630 | HR-TB | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR3261389 | Other | lineage4.9 | None | ERR3797074 | Sensitive | lineage4.9 | None | ERR3797078 | Sensitive | lineage4.9 | None | ERR3470682 | Other | lineage3 | None | ERR4450956 | Other | La1.7.1 | None |
|---|
