Run ID: ERR3470682
Sample name:
Date: 01-04-2023 02:31:10
Number of reads: 4850881
Percentage reads mapped: 76.3
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9596 | c.2295G>T | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 0.99 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764181 | p.Asp271Gly | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472518 | n.673G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472526 | n.681G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472544 | n.699C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472579 | n.734G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472591 | n.746G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472599 | n.754G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472600 | n.755C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472698 | n.853A>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472705 | n.860G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472708 | n.863T>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475713 | n.2056C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475747 | n.2090A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475751 | n.2094C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475781 | n.2124T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475843 | n.2186G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1475853 | n.2196C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475874 | n.2217C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476238 | n.2581T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476248 | n.2591G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476259 | n.2602C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476298 | n.2642_2644delCGA | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476306 | n.2649A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476572 | n.2915G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476573 | n.2916A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.23 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170769 | c.-157C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568418 | p.Lys88Gln | missense_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |