EBG00000313339 - n.2112T>C
Drug resistance types
62 Sensitive
27 RR-TB
36 HR-TB
46 MDR-TB
29 Pre-XDR-TB
0 XDR-TB
139 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 15 |
| lineage4.9 | 78 |
| La1.3 | 5 |
| lineage4.1.1.3 | 9 |
| lineage4.3.2 | 1 |
| lineage2.2.1 | 64 |
| lineage4.8.1 | 5 |
| lineage4.2.2.2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage6.1.3 | 1 |
| La1.8.1 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La2 | 1 |
| lineage4.4.1.1 | 7 |
| lineage4.4.1.2 | 2 |
| lineage3.1.1 | 5 |
| lineage4.4.1.1.1 | 2 |
| lineage4.2.2 | 7 |
| lineage2.2.1.1 | 7 |
| lineage4.2.1 | 7 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 18 |
| lineage4.3.3 | 7 |
| lineage4.3.4.1 | 3 |
| lineage3 | 17 |
| lineage4.4.2 | 9 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.9 | 2 |
| lineage3;lineage4.2.2.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2.2.2 | 5 |
| lineage2.2.1;lineage4 | 2 |
| La3;lineage4 | 1 |
| lineage3.1.2.2 | 2 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.2.1.1 | 3 |
| lineage4.3 | 2 |
| lineage4.1.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 3 |
| lineage4.3.2.1 | 3 |
| lineage4.3.4.2 | 4 |
| lineage4.5 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage5.1.1 | 2 |
| lineage4.1.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.1 | 2 |
| lineage6.3.1 | 1 |
| lineage4.7 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage4.1.1.3.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 339 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR19304104 | Other | lineage4.8 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR3675582 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR3675509 | Other | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR19303815 | Other | lineage4.8 | None | DRR120409 | HR-TB | La2 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4769516 | Sensitive | lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR7070154 | Other | lineage4.4.1.1 | None | ERR10796553 | Other | lineage4.9 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | SRR18003052 | Other | lineage2.2.1.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR3559286 | HR-TB | lineage4.2.2 | None | ERR867571 | Other | lineage4.9 | None | SRR6807688 | Pre-XDR-TB | lineage4.2.1 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR6045384 | Other | lineage4.1.2.1 | None | SRR15368914 | MDR-TB | lineage2.2.1 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR7069783 | Other | lineage4.1.2.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796577 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1181368 | Other | lineage4.9 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR4769442 | Sensitive | lineage4.9 | None | ERR5979407 | Other | lineage3 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR9786076 | Sensitive | lineage3 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | ERR2600574 | MDR-TB | lineage2.2.1 | None | SRR6045986 | Other | lineage3 | None | SRR6046141 | Other | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR10796591 | Other | lineage4.9 | None | SRR5818694 | Other | lineage3;lineage4.2.2.2 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR7236369 | Other | La1.8.1 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | ERR2600576 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR5007163 | Other | lineage3;lineage4.9 | None | SRR21240012 | Sensitive | lineage4.1.2.1 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR3470682 | Other | lineage3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | ERR473279 | Other | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR867569 | Other | lineage4.9 | None | ERR10796581 | Other | lineage4.1.2 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR10796618 | Other | lineage4.3.4.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR2101087 | Other | lineage4.4.2 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR1063855 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR867572 | Other | lineage4.9 | None | ERR3559275 | HR-TB | lineage4.2.2 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR10796596 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR10796593 | Other | lineage4.3 | None | ERR4769552 | Sensitive | La1.3 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR502517 | Other | lineage5.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR4769514 | Other | La1.3 | None | ERR4769555 | Sensitive | La1.3 | None | SRR19303899 | Other | lineage3 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR5818684 | Other | lineage4.2.2.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4817840 | Other | lineage3.1.2.2 | gb | SRR9971122 | MDR-TB | lineage4.8 | None | ERR10796635 | Other | lineage4.8 | None | SRR11342646 | HR-TB | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR6046729 | Other | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR6045778 | Other | lineage3.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | SRR6045832 | Other | lineage4.9 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR10796560 | Other | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR4817499 | Sensitive | lineage2.2.1.1 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | SRR7131294 | Other | lineage6.3.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | SRR1180345 | Other | lineage4.9 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1173719 | Other | lineage4.9 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR13180204 | Other | lineage3 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR10796634 | Other | lineage4.7 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR7131196 | Other | lineage4.8 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070251 | Sensitive | lineage4.1.1.3.1 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR6824357 | Pre-XDR-TB | lineage4.4.2 | None | ERR4769525 | Sensitive | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR7069082 | Other | lineage4.1.2.1 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR3675389 | Other | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR19303960 | Sensitive | lineage4.4.1.2 | None | ERR10796582 | Other | lineage4.3.4.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR7069074 | Other | lineage3 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR7131234 | Other | lineage4.9 | None | SRR7070351 | Sensitive | lineage3 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR10796566 | Other | lineage4.9 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | ERR2229148 | Other | lineage4.8 | dk | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR4811101 | Other | lineage4.4.2 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1180250 | Other | lineage4.9 | None | ERR2600577 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3559281 | HR-TB | lineage4.2.2 | None | ERR3559282 | HR-TB | lineage4.2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR7070553 | Other | lineage3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR2513259 | Other | lineage3 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR4863405 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | ERR3559279 | HR-TB | lineage4.2.2 | None | SRR6045553 | Other | lineage4.1.2.1;lineage4.9 | None | SRR7070521 | Other | lineage4.2.1.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR176780 | Sensitive | lineage4.9 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR21240093 | Other | lineage4.1.2.1 | None | ERR4811708 | HR-TB | lineage4 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR3559276 | HR-TB | lineage4.2.2 | None | SRR6046020 | Other | lineage3 | None |
|---|
