TB-Profiler result

Run: ERR4796472
Summary

Run ID: ERR4796472

Sample name:

Date: 01-04-2023 06:52:27

Number of reads: 855762

Percentage reads mapped: 62.56

Strain: lineage2.2.1

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 0.99
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrB 6750 p.Ala504Val missense_variant 1.0 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
gyrA 7570 p.Ala90Val missense_variant 1.0 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
fabG1 1673425 c.-15C>T upstream_gene_variant 1.0 isoniazid, ethionamide
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
katG 2155693 p.Ser140Asn missense_variant 0.16 isoniazid
pncA 2289162 p.Leu27Pro missense_variant 1.0 pyrazinamide
embA 4243222 c.-11C>A upstream_gene_variant 1.0 ethambutol
embB 4247429 p.Met306Val missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6775 c.-527G>T upstream_gene_variant 0.17
gyrA 6787 c.-515G>A upstream_gene_variant 0.17
gyrB 6798 p.Gly520Ala missense_variant 0.17
gyrA 6802 c.-500G>A upstream_gene_variant 0.17
gyrA 6811 c.-491C>T upstream_gene_variant 0.17
gyrA 6835 c.-467C>T upstream_gene_variant 0.15
gyrA 6844 c.-458T>C upstream_gene_variant 0.15
gyrA 6853 c.-449A>G upstream_gene_variant 0.17
gyrA 6862 c.-440C>G upstream_gene_variant 0.18
gyrA 6869 c.-433T>C upstream_gene_variant 0.15
gyrA 6872 c.-430T>C upstream_gene_variant 0.15
gyrA 6877 c.-425G>T upstream_gene_variant 0.17
gyrA 6878 c.-424T>C upstream_gene_variant 0.17
gyrA 6881 c.-421T>C upstream_gene_variant 0.17
gyrA 6889 c.-413G>C upstream_gene_variant 0.16
gyrA 6898 c.-404G>C upstream_gene_variant 0.17
gyrA 6904 c.-398C>G upstream_gene_variant 0.15
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9374 c.2075delC frameshift_variant 0.12
fgd1 491742 c.960T>C synonymous_variant 1.0
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 759641 c.-166T>A upstream_gene_variant 0.12
rpoB 760172 c.366G>C synonymous_variant 0.14
rpoB 760181 c.375T>G synonymous_variant 0.14
rpoB 760184 c.378A>G synonymous_variant 0.14
rpoB 760185 c.379C>T synonymous_variant 0.14
rpoB 760199 c.393C>G synonymous_variant 0.14
rpoB 760283 c.477G>C synonymous_variant 0.15
rpoB 760287 p.Ile161Val missense_variant 0.15
rpoB 761234 c.1428G>C synonymous_variant 0.16
rpoB 761249 c.1443A>G synonymous_variant 0.15
rpoB 761255 c.1449T>G synonymous_variant 0.13
rpoB 761261 c.1455G>C synonymous_variant 0.12
rpoB 761264 c.1458C>G synonymous_variant 0.12
rpoB 761273 c.1467T>C synonymous_variant 0.15
rpoB 761288 c.1482G>C synonymous_variant 0.14
rpoB 761289 p.Ser495Ala missense_variant 0.15
rpoB 761297 c.1491C>T synonymous_variant 0.17
rpoB 761318 c.1512G>C synonymous_variant 0.2
rpoB 761327 c.1521A>G synonymous_variant 0.21
rpoB 761336 c.1530C>T synonymous_variant 0.15
rpoB 761339 c.1533C>G synonymous_variant 0.15
rpoB 761342 c.1536G>A synonymous_variant 0.14
rpoB 761345 c.1539G>C synonymous_variant 0.13
rpoB 761346 p.Val514Ile missense_variant 0.13
rpoB 761360 c.1554T>C synonymous_variant 0.14
rpoB 761362 p.Ser519Thr missense_variant 0.14
rpoB 761948 c.2142G>C synonymous_variant 0.16
rpoB 761951 c.2145G>C synonymous_variant 0.23
rpoB 761954 c.2148C>G synonymous_variant 0.23
rpoB 761969 c.2163G>A synonymous_variant 0.22
rpoB 762002 c.2196C>G synonymous_variant 0.23
rpoB 762003 p.Asn733Gln missense_variant 0.24
rpoB 762011 c.2205G>C synonymous_variant 0.25
rpoB 762014 c.2208C>G synonymous_variant 0.25
rpoB 762017 c.2211A>G synonymous_variant 0.25
rpoB 762020 p.Glu738Asp missense_variant 0.25
rpoB 762023 c.2217C>T synonymous_variant 0.26
rpoB 762026 c.2220G>C synonymous_variant 0.26
rpoB 762041 c.2235C>T synonymous_variant 0.28
rpoB 762047 c.2241G>A synonymous_variant 0.29
rpoB 762053 c.2247T>C synonymous_variant 0.32
rpoB 762062 c.2256T>C synonymous_variant 0.35
rpoB 762065 c.2259T>C synonymous_variant 0.35
rpoB 762071 c.2265C>T synonymous_variant 0.34
rpoB 762083 c.2277T>C synonymous_variant 0.24
rpoB 762086 c.2280G>C synonymous_variant 0.24
rpoB 762101 c.2295C>G synonymous_variant 0.25
rpoB 762114 p.Ile770Val missense_variant 0.33
rpoB 762131 c.2325C>G synonymous_variant 0.26
rpoB 762137 c.2331C>T synonymous_variant 0.23
rpoB 762143 c.2337T>C synonymous_variant 0.24
rpoB 762158 c.2352G>A synonymous_variant 0.29
rpoB 762161 c.2355C>T synonymous_variant 0.29
rpoB 762170 c.2364C>G synonymous_variant 0.29
rpoB 762176 c.2370T>C synonymous_variant 0.29
rpoB 762185 c.2379G>C synonymous_variant 0.25
rpoB 762188 c.2382C>T synonymous_variant 0.25
rpoB 762221 c.2415G>A synonymous_variant 0.21
rpoB 762233 c.2427G>C synonymous_variant 0.21
rpoB 762236 c.2430G>C synonymous_variant 0.2
rpoB 762254 c.2448T>C synonymous_variant 0.12
rpoB 762257 c.2451C>G synonymous_variant 0.12
rpoB 762275 c.2469C>G synonymous_variant 0.13
rpoB 762290 c.2484C>T synonymous_variant 0.14
rpoC 762923 c.-447C>G upstream_gene_variant 0.15
rpoC 762929 c.-441G>T upstream_gene_variant 0.22
rpoC 762947 c.-423C>G upstream_gene_variant 0.17
rpoC 762983 c.-387C>T upstream_gene_variant 0.14
rpoC 762995 c.-375G>C upstream_gene_variant 0.14
rpoC 762998 c.-372G>A upstream_gene_variant 0.14
rpoC 763004 c.-366G>A upstream_gene_variant 0.13
rpoC 763028 c.-342T>C upstream_gene_variant 0.19
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763049 c.-321G>A upstream_gene_variant 0.21
rpoC 763053 c.-317T>C upstream_gene_variant 0.21
rpoC 763070 c.-300T>C upstream_gene_variant 0.19
rpoB 763074 p.Thr1090Val missense_variant 0.19
rpoC 763079 c.-291C>G upstream_gene_variant 0.19
rpoC 763085 c.-285C>G upstream_gene_variant 0.17
rpoC 763088 c.-282C>G upstream_gene_variant 0.17
rpoC 763094 c.-276G>C upstream_gene_variant 0.18
rpoC 763115 c.-255T>C upstream_gene_variant 0.17
rpoC 763124 c.-246C>T upstream_gene_variant 0.15
rpoC 763363 c.-7G>A upstream_gene_variant 0.24
rpoC 763375 c.6C>A synonymous_variant 0.21
rpoC 763402 c.33C>G synonymous_variant 0.26
rpoC 763408 c.39T>C synonymous_variant 0.29
rpoC 763411 c.42T>G synonymous_variant 0.3
rpoC 763414 c.45T>C synonymous_variant 0.3
rpoC 763420 c.51G>C synonymous_variant 0.26
rpoC 763430 c.61_63delAGGinsCGT synonymous_variant 0.3
rpoC 763433 p.Gln22Asn missense_variant 0.29
rpoC 763444 c.75T>C synonymous_variant 0.29
rpoC 763453 c.84C>G synonymous_variant 0.32
rpoC 763456 c.87A>G synonymous_variant 0.32
rpoC 763459 c.90G>A synonymous_variant 0.32
rpoC 763468 c.99G>C synonymous_variant 0.3
rpoC 763486 c.117T>C synonymous_variant 0.29
rpoC 763505 c.136C>T synonymous_variant 0.22
rpoC 763528 c.159G>T synonymous_variant 0.24
rpoC 763531 c.162G>C synonymous_variant 0.24
rpoC 763534 c.165T>C synonymous_variant 0.22
rpoC 763537 c.168C>G synonymous_variant 0.22
rpoC 763546 c.177A>G synonymous_variant 0.26
rpoC 763558 c.189C>T synonymous_variant 0.25
rpoC 763570 c.201G>C synonymous_variant 0.21
rpoC 763573 c.204G>C synonymous_variant 0.21
rpoC 763594 c.225C>T synonymous_variant 0.19
rpoC 763597 c.228G>A synonymous_variant 0.17
rpoC 763633 c.264T>C synonymous_variant 0.17
rpoC 763651 c.282C>T synonymous_variant 0.13
rpoC 763657 c.288G>A synonymous_variant 0.13
rpoC 763660 c.291T>G synonymous_variant 0.19
rpoC 763666 c.297G>C synonymous_variant 0.19
rpoC 763669 c.300C>G synonymous_variant 0.22
rpoC 763702 c.333C>G synonymous_variant 0.17
rpoC 763703 c.334_336delTCGinsAGC synonymous_variant 0.17
rpoC 763711 c.342G>C synonymous_variant 0.25
rpoC 763714 c.345G>T synonymous_variant 0.26
rpoC 763717 c.348T>C synonymous_variant 0.26
rpoC 763723 c.354G>C synonymous_variant 0.26
rpoC 763726 c.357C>T synonymous_variant 0.28
rpoC 763732 c.363C>G synonymous_variant 0.29
rpoC 763741 c.372C>T synonymous_variant 0.31
rpoC 763747 c.378G>A synonymous_variant 0.29
rpoC 763765 c.396T>C synonymous_variant 0.24
rpoC 763774 c.405G>C synonymous_variant 0.17
rpoC 763781 p.Ser138Ala missense_variant 0.17
rpoC 763792 p.Glu141Asp missense_variant 0.14
rpoC 763801 c.432C>G synonymous_variant 0.15
rpoC 763807 c.438T>C synonymous_variant 0.14
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.13
rpoC 764032 p.Asp221Glu missense_variant 0.14
rpoC 764387 c.1018T>C synonymous_variant 0.19
rpoC 764398 c.1029G>C synonymous_variant 0.17
rpoC 764404 c.1035C>T synonymous_variant 0.17
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.24
rpoC 764428 c.1059G>C synonymous_variant 0.19
rpoC 764431 c.1062G>C synonymous_variant 0.19
rpoC 764434 c.1065A>G synonymous_variant 0.19
rpoC 764435 c.1066_1068delAGGinsCGA synonymous_variant 0.2
rpoC 764446 c.1077T>C synonymous_variant 0.22
rpoC 764449 c.1080G>C synonymous_variant 0.23
rpoC 764458 c.1089G>C synonymous_variant 0.22
rpoC 764461 c.1092A>G synonymous_variant 0.26
rpoC 764497 c.1128A>G synonymous_variant 0.2
rpoC 764521 c.1152T>C synonymous_variant 0.17
rpoC 764539 c.1170C>G synonymous_variant 0.17
rpoC 764548 c.1179G>C synonymous_variant 0.2
rpoC 764566 c.1197C>G synonymous_variant 0.18
rpoC 764572 c.1203G>C synonymous_variant 0.19
rpoC 764575 c.1206T>G synonymous_variant 0.19
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.19
rpoC 764593 c.1224C>T synonymous_variant 0.28
rpoC 764611 c.1242G>C synonymous_variant 0.27
rpoC 764626 c.1257C>T synonymous_variant 0.33
rpoC 764632 c.1263T>C synonymous_variant 0.36
rpoC 764644 c.1275G>C synonymous_variant 0.35
rpoC 764647 c.1278C>T synonymous_variant 0.33
rpoC 764650 c.1281G>T synonymous_variant 0.31
rpoC 764662 c.1293G>C synonymous_variant 0.32
rpoC 764677 c.1308C>G synonymous_variant 0.19
rpoC 764680 c.1311G>A synonymous_variant 0.2
rpoC 764701 c.1332C>G synonymous_variant 0.31
rpoC 764722 c.1353G>C synonymous_variant 0.34
rpoC 764728 c.1359G>A synonymous_variant 0.34
rpoC 764752 c.1383G>C synonymous_variant 0.39
rpoC 764758 c.1389C>G synonymous_variant 0.39
rpoC 764779 c.1410G>A synonymous_variant 0.36
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.36
rpoC 764785 c.1416C>G synonymous_variant 0.34
rpoC 764791 c.1422C>G synonymous_variant 0.34
rpoC 764803 c.1434C>G synonymous_variant 0.39
rpoC 764809 c.1440C>G synonymous_variant 0.41
rpoC 764812 c.1443C>G synonymous_variant 0.4
rpoC 764815 c.1446A>G synonymous_variant 0.4
rpoC 764851 c.1482C>T synonymous_variant 0.35
rpoC 764854 c.1485G>C synonymous_variant 0.33
rpoC 764857 c.1488G>T synonymous_variant 0.32
rpoC 764858 c.1489T>C synonymous_variant 0.32
rpoC 764869 c.1500C>T synonymous_variant 0.32
rpoC 764872 c.1503A>G synonymous_variant 0.33
rpoC 764875 c.1506C>G synonymous_variant 0.33
rpoC 764887 c.1518G>C synonymous_variant 0.15
rpoC 764888 c.1519_1521delTTGinsCTC synonymous_variant 0.18
rpoC 765008 c.1639T>C synonymous_variant 0.13
rpoC 765011 c.1642_1644delAGCinsTCG synonymous_variant 0.13
rpoC 765016 c.1647C>G synonymous_variant 0.13
rpoC 765019 c.1650A>G synonymous_variant 0.14
rpoC 765034 c.1665T>C synonymous_variant 0.13
rpoC 765040 c.1671T>C synonymous_variant 0.13
rpoC 765041 c.1672T>C synonymous_variant 0.13
rpoC 765047 c.1678T>C synonymous_variant 0.13
rpoC 765055 c.1686C>G synonymous_variant 0.12
rpoC 765076 c.1707A>G synonymous_variant 0.12
rpoC 765079 c.1710T>C synonymous_variant 0.12
rpoC 765082 c.1713G>C synonymous_variant 0.12
rpoC 765085 c.1716T>G synonymous_variant 0.12
rpoC 765089 c.1720T>C synonymous_variant 0.12
rpoC 765100 c.1731G>C synonymous_variant 0.13
rpoC 765751 c.2382C>G synonymous_variant 0.16
rpoC 765753 p.Asp795Ala missense_variant 0.19
rpoC 765757 c.2388C>T synonymous_variant 0.19
rpoC 765772 c.2403C>G synonymous_variant 0.21
rpoC 765781 c.2412C>T synonymous_variant 0.24
rpoC 765784 c.2415C>G synonymous_variant 0.24
rpoC 765793 c.2424C>G synonymous_variant 0.26
rpoC 765796 c.2427C>T synonymous_variant 0.26
rpoC 765811 c.2442T>C synonymous_variant 0.3
rpoC 765814 c.2445A>T synonymous_variant 0.3
rpoC 765817 c.2448G>C synonymous_variant 0.3
rpoC 765820 c.2451G>C synonymous_variant 0.3
rpoC 765823 c.2454C>G synonymous_variant 0.32
rpoC 765844 c.2475C>G synonymous_variant 0.33
rpoC 765871 c.2502T>G synonymous_variant 0.29
rpoC 765875 p.Val836Ile missense_variant 0.32
rpoC 765880 c.2511G>A synonymous_variant 0.32
rpoC 765886 c.2517C>G synonymous_variant 0.29
rpoC 765898 c.2529C>T synonymous_variant 0.25
rpoC 765907 c.2538G>T synonymous_variant 0.19
rpoC 765910 c.2541G>C synonymous_variant 0.21
rpoC 765934 c.2565C>T synonymous_variant 0.14
rpoC 766488 p.Pro1040Arg missense_variant 1.0
rpoC 766666 c.3297C>G synonymous_variant 0.12
rpoC 766672 c.3303T>C synonymous_variant 0.13
rpoC 766678 c.3309C>T synonymous_variant 0.12
rpoC 766690 c.3321G>C synonymous_variant 0.12
rpoC 766703 p.Met1112Leu missense_variant 0.17
rpoC 766712 p.Ser1115Ala missense_variant 0.17
rpoC 766717 c.3348C>G synonymous_variant 0.17
rpoC 766720 c.3351C>T synonymous_variant 0.17
rpoC 766726 c.3357T>C synonymous_variant 0.18
rpoC 766738 c.3369G>C synonymous_variant 0.2
rpoC 766742 p.Gln1125Met missense_variant 0.2
rpoC 766753 c.3384C>G synonymous_variant 0.18
rpoC 766754 p.Glu1129Gln missense_variant 0.18
rpoC 766765 c.3396A>C synonymous_variant 0.21
rpoC 766774 c.3405T>C synonymous_variant 0.21
rpoC 766776 p.Arg1136His missense_variant 0.21
rpoC 766843 c.3474T>C synonymous_variant 0.14
rpoC 766936 p.Glu1189Asp missense_variant 0.14
rpoC 766945 c.3576A>G synonymous_variant 0.13
rpoC 766948 c.3579G>C synonymous_variant 0.13
rpoC 766951 c.3582G>C synonymous_variant 0.15
rpoC 766963 c.3594T>C synonymous_variant 0.15
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpS5 778581 p.Gly109Ser missense_variant 0.14
mmpL5 778861 c.-381G>A upstream_gene_variant 0.12
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 0.18
rpsL 781805 c.246G>C synonymous_variant 0.17
rpsL 781814 c.255C>T synonymous_variant 0.2
rpsL 781817 c.258G>T synonymous_variant 0.22
rpsL 781829 c.270G>T synonymous_variant 0.22
rpsL 781832 c.273T>C synonymous_variant 0.22
rpsL 781853 c.294C>T synonymous_variant 0.23
rpsL 781868 c.309T>C synonymous_variant 0.21
rpsL 781871 c.312G>C synonymous_variant 0.21
rpsL 781880 c.321C>G synonymous_variant 0.24
rpsL 781889 c.330C>T synonymous_variant 0.22
rpsL 781892 c.333A>G synonymous_variant 0.22
rpsL 781898 c.339A>C synonymous_variant 0.19
rpsL 781916 c.357T>C synonymous_variant 0.17
rpsL 781929 p.Gly124Ser missense_variant 0.14
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
atpE 1461116 c.72C>T synonymous_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.21
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.22
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.22
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.21
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.22
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.22
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.23
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.21
rrs 1471978 n.133C>T non_coding_transcript_exon_variant 0.3
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.39
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.38
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.32
rrs 1472029 n.185_188delGGGA non_coding_transcript_exon_variant 0.25
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.27
rrs 1472041 n.196C>G non_coding_transcript_exon_variant 0.27
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.21
rrs 1472057 n.212C>A non_coding_transcript_exon_variant 0.21
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.2
rrs 1472068 n.223T>C non_coding_transcript_exon_variant 0.21
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.21
rrs 1472070 n.225G>A non_coding_transcript_exon_variant 0.21
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.33
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.32
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.23
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.25
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.24
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.21
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.26
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.22
rrs 1472286 n.441C>A non_coding_transcript_exon_variant 0.22
rrs 1472288 n.443A>T non_coding_transcript_exon_variant 0.23
rrs 1472289 n.444T>C non_coding_transcript_exon_variant 0.22
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.23
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.22
rrs 1472326 n.481T>A non_coding_transcript_exon_variant 0.2
rrs 1472328 n.483G>T non_coding_transcript_exon_variant 0.2
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 0.2
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.13
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 0.12
rrs 1472437 n.592T>A non_coding_transcript_exon_variant 0.12
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.12
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.13
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.13
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.13
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.13
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.13
rrs 1472467 n.622G>T non_coding_transcript_exon_variant 0.18
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.25
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.32
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.32
rrs 1472497 n.652G>T non_coding_transcript_exon_variant 0.36
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.45
rrs 1472580 n.735C>A non_coding_transcript_exon_variant 0.56
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.56
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.56
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.32
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.32
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.24
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.24
rrs 1472844 n.999C>A non_coding_transcript_exon_variant 0.2
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.2
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.2
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.2
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.19
rrs 1472855 n.1011_1012insGT non_coding_transcript_exon_variant 0.19
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.28
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.36
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.34
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.5
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.48
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.49
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.55
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.56
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.62
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.59
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.59
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.58
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.58
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.55
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.57
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.5
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.46
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.34
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.35
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.33
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.15
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.19
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.21
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.21
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.21
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 0.3
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.3
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.48
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.5
rrl 1473833 n.176_177insT non_coding_transcript_exon_variant 0.67
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.62
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.43
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.43
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.55
rrl 1473887 n.230_231insA non_coding_transcript_exon_variant 0.55
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.45
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.45
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.45
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.4
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.4
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.32
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.32
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.3
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.3
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.3
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.3
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.32
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.32
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.38
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.3
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.25
rrl 1474286 n.630_631insGCGAGT non_coding_transcript_exon_variant 0.15
rrl 1474291 n.635_644delTTCCTCTCCG non_coding_transcript_exon_variant 0.15
rrl 1474303 n.646A>T non_coding_transcript_exon_variant 0.12
rrl 1474306 n.649A>C non_coding_transcript_exon_variant 0.15
rrl 1474307 n.650G>T non_coding_transcript_exon_variant 0.17
rrl 1474309 n.652G>T non_coding_transcript_exon_variant 0.17
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.41
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.43
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.43
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.45
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.43
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.42
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.4
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.39
rrl 1474412 n.756_768delACCCACACGCGCA non_coding_transcript_exon_variant 0.39
rrl 1474427 n.770A>T non_coding_transcript_exon_variant 0.4
rrl 1474429 n.773_783delCGCGTGTGAAT non_coding_transcript_exon_variant 0.43
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.43
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.46
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.65
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.65
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.62
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.61
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.53
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.23
rrl 1474688 n.1031G>A non_coding_transcript_exon_variant 0.15
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.14
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.25
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.25
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.25
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.29
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.31
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.33
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.31
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.31
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.31
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.31
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.31
rrl 1474831 n.1174A>C non_coding_transcript_exon_variant 0.31
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.29
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.13
rrl 1474903 n.1246T>C non_coding_transcript_exon_variant 0.13
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.13
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.33
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.36
rrl 1475067 n.1410A>G non_coding_transcript_exon_variant 0.36
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.42
rrl 1475079 n.1422T>C non_coding_transcript_exon_variant 0.42
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.42
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.42
rrl 1475095 n.1438A>G non_coding_transcript_exon_variant 0.17
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 0.38
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.42
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.42
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.17
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.33
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.36
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.36
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.29
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.28
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.29
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 0.29
rrl 1475482 n.1825A>G non_coding_transcript_exon_variant 0.29
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.29
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.28
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.28
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.29
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.29
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.28
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.28
rrl 1475555 n.1898T>C non_coding_transcript_exon_variant 0.28
rrl 1475655 n.1998T>A non_coding_transcript_exon_variant 0.25
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.25
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.43
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.45
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.36
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.36
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.36
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.42
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.46
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.53
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.53
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.53
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.52
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.57
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.65
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.65
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.61
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.59
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.59
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.71
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.75
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.75
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.57
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.57
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.54
rrl 1476103 n.2446C>A non_coding_transcript_exon_variant 0.41
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.41
rrl 1476110 n.2453G>T non_coding_transcript_exon_variant 0.41
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.44
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.48
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.5
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.56
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.47
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.47
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.5
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.51
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.55
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.48
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.5
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.52
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.54
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.54
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.55
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.55
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.54
rrl 1476300 n.2643G>A non_coding_transcript_exon_variant 0.54
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.54
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.57
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.52
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.36
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.35
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.41
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.39
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.27
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.29
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.19
rpsA 1833646 c.105T>C synonymous_variant 0.17
rpsA 1833652 c.111C>T synonymous_variant 0.17
rpsA 1833664 c.123C>A synonymous_variant 0.17
rpsA 1833679 c.138G>C synonymous_variant 0.21
rpsA 1833685 c.144G>C synonymous_variant 0.25
rpsA 1833694 c.153G>C synonymous_variant 0.27
rpsA 1833697 c.156C>G synonymous_variant 0.27
rpsA 1833709 c.168C>T synonymous_variant 0.22
rpsA 1833715 c.174G>A synonymous_variant 0.23
rpsA 1833727 c.186G>C synonymous_variant 0.26
rpsA 1833730 c.189C>T synonymous_variant 0.27
rpsA 1833733 c.192C>G synonymous_variant 0.29
rpsA 1833734 p.Ala65Ser missense_variant 0.28
rpsA 1833742 c.201A>G synonymous_variant 0.27
rpsA 1833745 c.204G>C synonymous_variant 0.28
rpsA 1833754 c.213G>A synonymous_variant 0.28
rpsA 1833760 c.219C>T synonymous_variant 0.27
rpsA 1833769 c.228C>G synonymous_variant 0.27
rpsA 1833787 c.246C>G synonymous_variant 0.25
rpsA 1833790 c.249T>C synonymous_variant 0.24
rpsA 1833793 c.252C>T synonymous_variant 0.24
rpsA 1833799 c.258C>G synonymous_variant 0.22
rpsA 1833802 c.261A>G synonymous_variant 0.22
rpsA 1833811 c.270G>C synonymous_variant 0.24
rpsA 1833835 c.294C>T synonymous_variant 0.12
rpsA 1833856 c.315A>G synonymous_variant 0.12
rpsA 1833859 c.318C>G synonymous_variant 0.13
rpsA 1833862 c.321G>T synonymous_variant 0.16
rpsA 1833874 c.333T>C synonymous_variant 0.17
rpsA 1833886 c.345C>G synonymous_variant 0.22
rpsA 1833894 p.Ala118Glu missense_variant 0.2
rpsA 1833919 c.378C>T synonymous_variant 0.19
rpsA 1833920 p.Lys127Arg missense_variant 0.19
rpsA 1833928 c.387G>C synonymous_variant 0.19
rpsA 1833931 c.390C>G synonymous_variant 0.19
rpsA 1833949 c.408T>C synonymous_variant 0.17
rpsA 1833952 c.411C>T synonymous_variant 0.18
rpsA 1833964 c.423C>T synonymous_variant 0.16
rpsA 1833970 c.429G>T synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1833991 c.450C>A synonymous_variant 0.3
rpsA 1834000 c.459G>C synonymous_variant 0.29
rpsA 1834012 c.471G>C synonymous_variant 0.29
rpsA 1834015 c.474G>C synonymous_variant 0.29
rpsA 1834021 c.480C>T synonymous_variant 0.29
rpsA 1834030 c.489C>G synonymous_variant 0.25
rpsA 1834034 p.Ile165Val missense_variant 0.23
rpsA 1834093 c.552G>T synonymous_variant 0.25
rpsA 1834099 c.558C>G synonymous_variant 0.29
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 0.15
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834273 c.732C>T synonymous_variant 0.15
rpsA 1834279 c.738C>T synonymous_variant 0.19
rpsA 1834298 p.Gln253Glu missense_variant 0.21
rpsA 1834303 c.762T>C synonymous_variant 0.22
rpsA 1834306 c.765T>C synonymous_variant 0.21
rpsA 1834307 p.Asp256Asn missense_variant 0.21
rpsA 1834327 c.786G>T synonymous_variant 0.34
rpsA 1834340 p.Met267Leu missense_variant 0.37
rpsA 1834348 c.807T>C synonymous_variant 0.33
rpsA 1834354 c.813G>T synonymous_variant 0.33
rpsA 1834357 c.816T>C synonymous_variant 0.33
rpsA 1834361 c.820T>C synonymous_variant 0.33
rpsA 1834366 c.825A>G synonymous_variant 0.33
rpsA 1834369 c.828C>G synonymous_variant 0.33
rpsA 1834378 c.837T>C synonymous_variant 0.37
rpsA 1834387 c.846C>T synonymous_variant 0.36
rpsA 1834399 p.His286Gln missense_variant 0.33
rpsA 1834411 c.870T>C synonymous_variant 0.31
rpsA 1834417 c.876G>C synonymous_variant 0.31
rpsA 1834423 c.882G>C synonymous_variant 0.31
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.32
rpsA 1834456 c.915T>C synonymous_variant 0.33
rpsA 1834465 c.924T>C synonymous_variant 0.3
rpsA 1834468 c.927A>G synonymous_variant 0.3
rpsA 1834489 c.948T>C synonymous_variant 0.27
rpsA 1834528 c.987T>C synonymous_variant 0.27
rpsA 1834534 c.993C>G synonymous_variant 0.24
rpsA 1834540 c.999G>C synonymous_variant 0.22
rpsA 1834543 c.1002C>G synonymous_variant 0.21
rpsA 1834546 c.1005T>C synonymous_variant 0.21
rpsA 1834552 c.1011G>C synonymous_variant 0.21
rpsA 1834555 c.1014T>G synonymous_variant 0.21
rpsA 1834557 p.Ala339Val missense_variant 0.21
rpsA 1834564 c.1023C>T synonymous_variant 0.21
rpsA 1834591 c.1050C>T synonymous_variant 0.24
rpsA 1834609 c.1068T>C synonymous_variant 0.19
rpsA 1834619 c.1078T>C synonymous_variant 0.17
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.17
rpsA 1834633 c.1092A>G synonymous_variant 0.21
rpsA 1834639 c.1098T>C synonymous_variant 0.21
rpsA 1834650 p.Thr370Ser missense_variant 0.18
rpsA 1834652 p.Glu371Pro missense_variant 0.15
rpsA 1834663 c.1122C>T synonymous_variant 0.16
rpsA 1834667 p.Ala376Ser missense_variant 0.17
rpsA 1834678 c.1137C>T synonymous_variant 0.17
rpsA 1834690 c.1149T>C synonymous_variant 0.19
rpsA 1834733 p.Ala398Pro missense_variant 0.25
rpsA 1834738 c.1197A>G synonymous_variant 0.25
rpsA 1834753 c.1212T>C synonymous_variant 0.14
rpsA 1834759 c.1218A>C synonymous_variant 0.17
rpsA 1834765 p.Glu408Asp missense_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155316 p.Ile266Phe missense_variant 0.12
katG 2155680 c.432G>C synonymous_variant 0.16
katG 2155691 c.421T>C synonymous_variant 0.15
katG 2155696 p.Ala139Gly missense_variant 0.17
katG 2155716 c.396T>G synonymous_variant 0.16
katG 2155722 c.390G>A synonymous_variant 0.16
katG 2155735 p.Met126Gln missense_variant 0.15
katG 2155743 c.369G>T synonymous_variant 0.15
katG 2155746 p.Ala122Gly missense_variant 0.15
katG 2155765 p.His116Ile missense_variant 0.18
katG 2155768 p.Ile115Thr missense_variant 0.18
katG 2155785 p.Ala109Ser missense_variant 0.16
katG 2155794 c.318G>C synonymous_variant 0.16
katG 2155806 p.Phe102Met missense_variant 0.14
katG 2155815 c.297G>C synonymous_variant 0.12
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2170008 p.Ala202Val missense_variant 0.13
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pepQ 2860611 c.-193T>A upstream_gene_variant 0.17
thyA 3073977 c.495A>G synonymous_variant 0.19
thyA 3073983 c.489C>G synonymous_variant 0.19
thyA 3073989 c.483T>C synonymous_variant 0.14
thyA 3073993 c.478_479delAGinsTC synonymous_variant 0.13
thyA 3073997 c.475C>T synonymous_variant 0.13
thyA 3074004 c.468T>C synonymous_variant 0.12
thyA 3074025 p.Phe149Leu missense_variant 0.12
thyA 3074055 p.Glu139Asp missense_variant 0.13
thyA 3074060 p.Ile138Leu missense_variant 0.14
thyA 3074065 p.Gly136Ala missense_variant 0.14
thyA 3074067 c.405C>G synonymous_variant 0.14
thyA 3074070 c.402C>T synonymous_variant 0.14
thyA 3074082 c.390G>C synonymous_variant 0.15
thyA 3074087 p.Ile129Leu missense_variant 0.14
thyA 3074088 p.Ile128Met missense_variant 0.14
thyA 3074100 c.372T>C synonymous_variant 0.14
thyA 3074103 c.369C>G synonymous_variant 0.14
thyA 3074106 c.366T>C synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3449573 p.Arg357Leu missense_variant 0.12
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568442 p.Lys80Gln missense_variant 1.0
whiB7 3568443 p.His79Gln missense_variant 1.0
whiB7 3568854 c.-176delG upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 0.16
rpoA 3877617 c.891G>C synonymous_variant 0.16
rpoA 3877638 c.870T>C synonymous_variant 0.16
rpoA 3877653 c.855C>T synonymous_variant 0.16
rpoA 3877656 c.852T>G synonymous_variant 0.17
rpoA 3877662 c.846C>T synonymous_variant 0.18
rpoA 3877665 c.843C>G synonymous_variant 0.19
rpoA 3877674 c.834C>G synonymous_variant 0.19
rpoA 3877680 c.828G>C synonymous_variant 0.19
rpoA 3877686 c.822A>G synonymous_variant 0.17
rpoA 3877692 c.816G>C synonymous_variant 0.17
rpoA 3877704 c.804G>T synonymous_variant 0.22
rpoA 3877716 c.792C>G synonymous_variant 0.24
rpoA 3877734 c.774G>C synonymous_variant 0.17
rpoA 3877737 c.771G>C synonymous_variant 0.17
rpoA 3877740 c.768G>C synonymous_variant 0.16
rpoA 3877875 c.633T>G synonymous_variant 0.13
rpoA 3877881 c.627G>C synonymous_variant 0.13
rpoA 3877884 c.624G>C synonymous_variant 0.13
rpoA 3877898 p.Pro204Ala missense_variant 0.14
rpoA 3877905 c.603A>C synonymous_variant 0.15
rpoA 3877908 c.600T>C synonymous_variant 0.15
rpoA 3877926 c.582G>C synonymous_variant 0.14
rpoA 3877932 c.576G>C synonymous_variant 0.15
rpoA 3877936 p.Lys191Arg missense_variant 0.16
rpoA 3877962 c.546G>T synonymous_variant 0.17
rpoA 3878630 c.-123G>C upstream_gene_variant 0.25
clpC1 4038767 c.1938G>C synonymous_variant 0.12
clpC1 4038770 c.1935C>T synonymous_variant 0.12
clpC1 4038773 c.1932T>C synonymous_variant 0.12
clpC1 4038795 p.Ser637Thr missense_variant 0.14
clpC1 4038812 c.1893T>C synonymous_variant 0.14
clpC1 4038815 c.1890G>C synonymous_variant 0.14
clpC1 4038860 c.1845G>C synonymous_variant 0.21
clpC1 4038878 c.1827A>G synonymous_variant 0.25
clpC1 4038905 c.1800A>G synonymous_variant 0.26
clpC1 4038911 c.1794G>T synonymous_variant 0.24
clpC1 4038914 c.1791G>C synonymous_variant 0.24
clpC1 4038917 c.1788C>T synonymous_variant 0.24
clpC1 4038923 c.1782A>G synonymous_variant 0.25
clpC1 4038932 c.1773G>C synonymous_variant 0.18
clpC1 4038941 c.1764G>C synonymous_variant 0.19
clpC1 4038953 c.1752A>G synonymous_variant 0.18
clpC1 4038956 c.1749T>C synonymous_variant 0.16
clpC1 4038962 c.1743C>T synonymous_variant 0.17
clpC1 4038965 c.1740T>C synonymous_variant 0.16
clpC1 4038971 c.1734T>C synonymous_variant 0.17
clpC1 4038974 c.1731T>C synonymous_variant 0.17
clpC1 4038980 c.1725C>T synonymous_variant 0.17
clpC1 4038989 c.1716T>C synonymous_variant 0.18
clpC1 4038997 c.1708T>C synonymous_variant 0.18
clpC1 4039004 c.1701C>G synonymous_variant 0.16
clpC1 4039022 c.1683A>G synonymous_variant 0.19
clpC1 4039079 c.1626C>G synonymous_variant 0.13
clpC1 4039091 c.1614G>C synonymous_variant 0.21
clpC1 4039097 c.1608G>T synonymous_variant 0.23
clpC1 4039103 c.1602T>C synonymous_variant 0.29
clpC1 4039106 c.1599G>C synonymous_variant 0.28
clpC1 4039121 c.1584T>C synonymous_variant 0.29
clpC1 4039124 c.1581C>G synonymous_variant 0.29
clpC1 4039136 c.1569C>T synonymous_variant 0.3
clpC1 4039142 c.1563A>G synonymous_variant 0.27
clpC1 4039145 c.1560G>C synonymous_variant 0.27
clpC1 4039169 p.Glu512Asp missense_variant 0.2
clpC1 4039172 c.1533A>G synonymous_variant 0.2
clpC1 4039178 c.1527G>T synonymous_variant 0.19
clpC1 4039181 c.1522_1524delTTGinsCTC synonymous_variant 0.19
clpC1 4039187 c.1518G>T synonymous_variant 0.19
clpC1 4039199 p.Ala502Glu missense_variant 0.23
clpC1 4039217 c.1488G>C synonymous_variant 0.2
clpC1 4039220 c.1485G>C synonymous_variant 0.21
clpC1 4039223 c.1482C>T synonymous_variant 0.18
clpC1 4039239 p.Gly489Ala missense_variant 0.15
clpC1 4039409 c.1296T>C synonymous_variant 0.12
clpC1 4039412 c.1293T>G synonymous_variant 0.14
clpC1 4039415 p.Glu430Asp missense_variant 0.14
clpC1 4039427 p.Glu426Asp missense_variant 0.14
clpC1 4039430 c.1275T>C synonymous_variant 0.14
clpC1 4039436 c.1269G>A synonymous_variant 0.14
clpC1 4039439 c.1266C>T synonymous_variant 0.14
clpC1 4039442 c.1263A>G synonymous_variant 0.12
clpC1 4039448 c.1257A>G synonymous_variant 0.12
clpC1 4039454 c.1251A>T synonymous_variant 0.13
clpC1 4039463 c.1242C>G synonymous_variant 0.13
clpC1 4039466 c.1239T>C synonymous_variant 0.14
clpC1 4039469 c.1236T>C synonymous_variant 0.13
clpC1 4039472 c.1233G>T synonymous_variant 0.12
clpC1 4039481 c.1224T>C synonymous_variant 0.12
clpC1 4039484 c.1221T>C synonymous_variant 0.11
clpC1 4039688 c.1017G>A synonymous_variant 0.14
clpC1 4039694 c.1011G>C synonymous_variant 0.18
clpC1 4039700 c.1005C>T synonymous_variant 0.18
clpC1 4039724 c.981A>G synonymous_variant 0.22
clpC1 4039733 c.972G>C synonymous_variant 0.21
clpC1 4039748 c.957G>C synonymous_variant 0.26
clpC1 4039751 c.954A>G synonymous_variant 0.26
clpC1 4039757 c.948A>G synonymous_variant 0.28
clpC1 4039766 c.939T>C synonymous_variant 0.33
clpC1 4039769 c.936C>G synonymous_variant 0.33
clpC1 4039778 c.927A>G synonymous_variant 0.31
clpC1 4039790 c.915C>T synonymous_variant 0.31
clpC1 4039793 c.912C>G synonymous_variant 0.32
clpC1 4039802 c.903G>C synonymous_variant 0.32
clpC1 4039817 c.888A>T synonymous_variant 0.39
clpC1 4039820 c.885T>G synonymous_variant 0.38
clpC1 4039831 c.874T>C synonymous_variant 0.39
clpC1 4039832 c.873C>G synonymous_variant 0.39
clpC1 4039835 c.870C>T synonymous_variant 0.39
clpC1 4039850 c.855T>C synonymous_variant 0.38
clpC1 4039865 c.840T>C synonymous_variant 0.32
clpC1 4039868 c.837C>T synonymous_variant 0.36
clpC1 4039898 c.807C>G synonymous_variant 0.34
clpC1 4039913 c.792C>T synonymous_variant 0.26
clpC1 4039931 c.774T>C synonymous_variant 0.28
clpC1 4039937 c.768G>C synonymous_variant 0.26
clpC1 4039943 c.762G>C synonymous_variant 0.26
clpC1 4039946 c.759A>T synonymous_variant 0.26
clpC1 4039952 c.753T>C synonymous_variant 0.26
clpC1 4039955 c.750G>C synonymous_variant 0.28
clpC1 4039958 c.747G>C synonymous_variant 0.21
clpC1 4039979 c.726C>G synonymous_variant 0.16
clpC1 4039982 c.723G>A synonymous_variant 0.16
clpC1 4039985 c.720G>A synonymous_variant 0.16
clpC1 4039991 c.714G>C synonymous_variant 0.17
clpC1 4040002 p.His235Asn missense_variant 0.17
clpC1 4040003 c.702G>C synonymous_variant 0.17
clpC1 4040015 c.690G>C synonymous_variant 0.16
clpC1 4040411 c.294T>C synonymous_variant 0.14
clpC1 4040423 c.282A>G synonymous_variant 0.14
clpC1 4040426 c.279T>C synonymous_variant 0.14
clpC1 4040431 c.274T>C synonymous_variant 0.14
clpC1 4040441 c.264C>G synonymous_variant 0.15
clpC1 4040444 c.261C>G synonymous_variant 0.13
clpC1 4040459 c.246C>G synonymous_variant 0.12
clpC1 4040480 c.225T>C synonymous_variant 0.14
clpC1 4040486 c.219G>C synonymous_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
ethA 4326513 p.Thr321Pro missense_variant 1.0
ethA 4326676 p.Ser266Arg missense_variant 1.0
whiB6 4338576 c.-55G>T upstream_gene_variant 0.12
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0