Rv3596c - c.750G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
48 Sensitive
13 RR-TB
42 HR-TB
15 MDR-TB
10 Pre-XDR-TB
1 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 20 |
| lineage4.9 | 86 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.2;lineage4.9 | 3 |
| lineage4.3.3;lineage4.8 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.8 | 3 |
| lineage3 | 5 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.3.3 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 5 |
| lineage2.2.2 | 3 |
| lineage4.1.2.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.4.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4 | 2 |
| M.canetti;lineage1 | 1 |
| lineage6.1.3 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.4.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.7 | 1 |
| 1 | |
| lineage1.1.2 | 1 |
| La1.3 | 1 |
| lineage1.2.2.2 | 1 |
| La1.7.1 | 1 |
| La1.2.BCG | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.6;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 182 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR176651 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR2432997 | Other | lineage4.8 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR7496471 | Sensitive | lineage4 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR3273109 | HR-TB | lineage4 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR323037 | Other | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR28351444 | MDR-TB | lineage3 | None | ERR212033 | Other | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4769436 | Other | La1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR9896144 | Other | lineage3 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1915487 | Other | La1.2.BCG | None | SRR1180270 | Other | lineage2.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6046385 | Sensitive | lineage4.9 | None |
|---|
