Run ID: ERR2432997
Sample name:
Date: 31-03-2023 18:11:42
Number of reads: 700233
Percentage reads mapped: 76.66
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472359 | n.514A>C | non_coding_transcript_exon_variant | 0.83 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.19 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.12 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.1 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.11 |
rpoB | 761060 | c.1254C>G | synonymous_variant | 0.11 |
rpoB | 761066 | c.1260G>C | synonymous_variant | 0.1 |
rpoB | 761084 | c.1278C>G | synonymous_variant | 0.11 |
rpoB | 761087 | c.1281C>G | synonymous_variant | 0.11 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.12 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.13 |
rpoB | 761105 | c.1299C>T | synonymous_variant | 0.88 |
rpoB | 762122 | p.Asp772Glu | missense_variant | 0.12 |
rpoB | 762128 | c.2322G>C | synonymous_variant | 0.13 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.12 |
rpoB | 762134 | c.2328C>G | synonymous_variant | 0.12 |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.12 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.12 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.12 |
rpoB | 762156 | p.Val784Ile | missense_variant | 0.11 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.11 |
rpoB | 762174 | c.2370delT | frameshift_variant | 0.11 |
rpoB | 762181 | p.Asp792Gly | missense_variant | 0.11 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.14 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.17 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.17 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.17 |
rpoC | 762947 | c.-423C>G | upstream_gene_variant | 0.24 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.24 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.22 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 0.24 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.23 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.23 |
rpoC | 763022 | c.-348C>G | upstream_gene_variant | 0.21 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.22 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.21 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 0.18 |
rpoC | 763053 | c.-317_-315delTTGinsCTC | upstream_gene_variant | 0.18 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.16 |
rpoB | 763072 | c.3268_3270delACC | conservative_inframe_deletion | 0.16 |
rpoB | 763078 | c.3272_3273insGCC | disruptive_inframe_insertion | 0.17 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.12 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.13 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.18 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.19 |
rpoC | 763618 | c.249C>G | synonymous_variant | 0.19 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.19 |
rpoC | 763630 | c.261G>C | synonymous_variant | 0.19 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.19 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.19 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.19 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.19 |
rpoC | 763686 | p.Tyr106Phe | missense_variant | 0.19 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.17 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.18 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.15 |
rpoC | 763714 | c.345G>C | synonymous_variant | 0.15 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.15 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.14 |
rpoC | 764507 | p.Ala380Ser | missense_variant | 0.11 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.11 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.14 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.12 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.16 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.18 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.2 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.19 |
rpoC | 764722 | c.1353G>C | synonymous_variant | 0.16 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.17 |
rpoC | 764749 | c.1380G>C | synonymous_variant | 0.17 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.17 |
rpoC | 764780 | c.1411_1413delAGCinsTCG | synonymous_variant | 0.17 |
rpoC | 764785 | c.1416C>G | synonymous_variant | 0.18 |
rpoC | 764797 | c.1428G>C | synonymous_variant | 0.17 |
rpoC | 764804 | p.Gln479Ala | missense_variant | 0.14 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.14 |
rpoC | 764813 | p.Gln482Val | missense_variant | 0.13 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.13 |
rpoC | 764833 | c.1464A>G | synonymous_variant | 0.15 |
rpoC | 764843 | p.Ala492Thr | missense_variant | 0.16 |
rpoC | 764857 | c.1488G>C | synonymous_variant | 0.11 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406302 | c.1039C>A | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472434 | n.589_590insC | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472437 | n.592T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472438 | n.594delC | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472446 | n.602dupC | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472450 | n.606delC | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472456 | n.611T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472460 | n.615T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472461 | n.616G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472462 | n.617T>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472467 | n.622G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472473 | n.628G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472474 | n.629C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472476 | n.631A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472504 | n.659A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472574 | n.729T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472583 | n.738T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472863 | n.1018T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472867 | n.1022T>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472869 | n.1024G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472870 | n.1025T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472873 | n.1028C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472875 | n.1030T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472880 | n.1035G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474627 | n.970G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474630 | n.973T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474660 | n.1003G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474676 | n.1019T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474690 | n.1033C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474709 | n.1053_1056delTGGT | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474717 | n.1060_1061insGCCAG | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475186 | n.1529C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476146 | n.2489G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476661 | n.3004A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476665 | n.3008T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476668 | n.3011C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476675 | n.3018C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476682 | n.3026delT | non_coding_transcript_exon_variant | 0.18 |
inhA | 1674542 | p.Ala114Val | missense_variant | 0.13 |
inhA | 1674672 | c.471C>A | synonymous_variant | 0.11 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.19 |
rpsA | 1833877 | c.336C>G | synonymous_variant | 0.19 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.15 |
rpsA | 1833893 | p.Ala118Lys | missense_variant | 0.18 |
rpsA | 1833896 | p.Leu119Ile | missense_variant | 0.19 |
rpsA | 1833905 | p.Lys122Glu | missense_variant | 0.2 |
rpsA | 1833912 | p.Glu124Gly | missense_variant | 0.21 |
rpsA | 1833915 | p.Ala125Val | missense_variant | 0.21 |
rpsA | 1833921 | p.Lys127Thr | missense_variant | 0.25 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.23 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.23 |
rpsA | 1833955 | c.414G>C | synonymous_variant | 0.2 |
rpsA | 1833970 | c.429G>T | synonymous_variant | 0.22 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.2 |
rpsA | 1833997 | c.456G>C | synonymous_variant | 0.19 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.19 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.2 |
rpsA | 1834012 | c.471G>T | synonymous_variant | 0.2 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 |
rpoA | 3878595 | c.-88C>T | upstream_gene_variant | 0.67 |
clpC1 | 4039691 | c.1014G>C | synonymous_variant | 0.14 |
clpC1 | 4039711 | p.Ile332Val | missense_variant | 0.12 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.13 |
clpC1 | 4039736 | c.969C>G | synonymous_variant | 0.12 |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.12 |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.12 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.17 |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.12 |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.12 |
clpC1 | 4039773 | p.Lys311Met | missense_variant | 0.12 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.12 |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.12 |
clpC1 | 4039787 | c.916_918delTCGinsAGC | synonymous_variant | 0.13 |
clpC1 | 4039817 | c.888A>T | synonymous_variant | 0.2 |
clpC1 | 4039820 | c.885T>G | synonymous_variant | 0.21 |
clpC1 | 4039829 | c.874_876delTTGinsCTC | synonymous_variant | 0.22 |
clpC1 | 4039832 | c.873C>G | synonymous_variant | 0.22 |
clpC1 | 4039838 | p.Leu289Ile | missense_variant | 0.23 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.21 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.24 |
clpC1 | 4039871 | c.834C>G | synonymous_variant | 0.23 |
clpC1 | 4039875 | p.Asn277Arg | missense_variant | 0.24 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.3 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.3 |
clpC1 | 4039925 | c.780C>G | synonymous_variant | 0.27 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.25 |
clpC1 | 4039937 | c.768G>C | synonymous_variant | 0.23 |
clpC1 | 4039945 | p.Ser254Ala | missense_variant | 0.24 |
clpC1 | 4039946 | c.759A>C | synonymous_variant | 0.24 |
clpC1 | 4039949 | c.756G>C | synonymous_variant | 0.24 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.24 |
clpC1 | 4039955 | c.750G>C | synonymous_variant | 0.24 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.27 |
clpC1 | 4039988 | c.717C>G | synonymous_variant | 0.28 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 0.28 |
clpC1 | 4040001 | p.His235Arg | missense_variant | 0.24 |
clpC1 | 4040010 | p.Ala232Asp | missense_variant | 0.28 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.25 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.24 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.27 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.17 |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 0.21 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |