Rv3596c - c.1014G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
52 Sensitive
9 RR-TB
27 HR-TB
9 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.2.1 | 3 |
| lineage4.9.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.9 | 55 |
| lineage4.8 | 3 |
| lineage4.1.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4 | 2 |
| lineage2.2.1 | 11 |
| lineage1.2.2.2 | 1 |
| lineage4.1.1.3 | 4 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.4 | 1 |
| La1.7;lineage4.9 | 5 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage4.7 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage4.1.2.1 | 3 |
| lineage4.3.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage3 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| 1 | |
| La1;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage4.1.2 | 1 |
| lineage4.8.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2.1.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.3.4 | 1 |
| La2;lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 132 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR7496471 | Sensitive | lineage4 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR2229456 | Sensitive | lineage4.8 | dk | ERR11464970 | Sensitive | lineage4.3.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR11466143 | Sensitive | lineage4.4.1.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR400529 | Other | lineage3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358991 | HR-TB | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR9285855 | Sensitive | lineage4.3.4.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR11465623 | Sensitive | lineage4.1.1.3 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR12708418 | HR-TB | lineage2.2.1 | None |
|---|
