Rv3596c - c.1014G>C
Drug resistance types
81 Sensitive
24 RR-TB
36 HR-TB
17 MDR-TB
13 Pre-XDR-TB
0 XDR-TB
47 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 19 |
| lineage4 | 22 |
| lineage4.4 | 1 |
| 25 | |
| lineage2.2.1.1 | 1 |
| La1.7.1 | 2 |
| lineage4.9 | 53 |
| lineage4.8 | 38 |
| lineage3 | 7 |
| lineage4;lineage2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4.7 | 4 |
| lineage4.1.1.2 | 1 |
| La1.2.BCG | 1 |
| lineage3.1.1 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2 | 1 |
| lineage4.8.1 | 1 |
| lineage4.9.1 | 1 |
| lineage2.2 | 3 |
| La1.8.1 | 2 |
| lineage4.2.2.1 | 1 |
| La1.3 | 3 |
| lineage4.9;La1.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage6 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.6.1.1 | 1 |
| lineage4.6.1 | 2 |
| La1.6 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 218 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16156832 | RR-TB | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR21469201 | Other | La1.7.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | ERR4815310 | Other | None | SRR3675488 | HR-TB | None | SRR3105762 | HR-TB | None | SRR3675222 | Other | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814690 | Sensitive | lineage2.2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR4815550 | Other | lineage4 | None | ERR4815524 | HR-TB | None | ERR2179857 | RR-TB | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675501 | HR-TB | None | ERR2229745 | HR-TB | lineage4.8 | None | ERR2229728 | Sensitive | lineage4.8 | dk | ERR4815909 | Other | lineage4.8 | None | ERR2229040 | Sensitive | lineage4 | None | ERR2229241 | Other | lineage4.8 | None | ERR2229046 | Sensitive | lineage4.8 | dk | ERR212125 | HR-TB | lineage4 | None | ERR2229156 | Sensitive | lineage4.8 | None | ERR4816470 | Other | lineage3 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR2229078 | Sensitive | lineage4.8 | None | ERR2229104 | Sensitive | lineage4.8 | None | ERR2229588 | Sensitive | lineage4.8 | None | ERR2229150 | Sensitive | lineage4.8 | dk | ERR2229805 | Sensitive | lineage4.8 | dk | ERR216965 | HR-TB | lineage4.9 | None | ERR2229628 | Sensitive | lineage4.8 | None | ERR2229311 | Sensitive | lineage4.8 | None | ERR2229630 | Sensitive | lineage4.8 | None | ERR2229322 | Sensitive | lineage4.8 | None | ERR2229403 | Sensitive | lineage4.8 | None | ERR2229381 | Sensitive | lineage4.8 | None | ERR2229387 | Sensitive | lineage4.8 | None | ERR2229332 | RR-TB | lineage4.8 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR2229382 | Sensitive | lineage4.8 | None | ERR2229411 | Sensitive | lineage4 | None | ERR2229393 | Other | lineage4.8 | None | ERR2229410 | Sensitive | lineage4.8 | None | ERR2229406 | Other | lineage4.8 | None | ERR2229462 | Other | lineage4.8 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR2229698 | RR-TB | lineage4.8 | None | ERR2229438 | Sensitive | lineage4.8 | None | ERR2229701 | Sensitive | lineage4.8 | None | ERR2229492 | Sensitive | lineage4.8 | None | ERR2229456 | Sensitive | lineage4.8 | dk | ERR2229477 | Sensitive | lineage4.8 | None | ERR2228819 | RR-TB | lineage4.8 | None | ERR2229506 | Sensitive | lineage4.8 | None | ERR2513054 | Other | lineage4.2.2.2 | None | ERR2229521 | Sensitive | lineage4.8 | None | ERR2229720 | Other | lineage4.8 | None | ERR4818668 | Sensitive | lineage4.1.2.1 | None | ERR2229726 | Sensitive | lineage4.8 | None | ERR2228902 | Sensitive | lineage4 | None | ERR4817987 | Other | lineage4.7 | None | ERR2432997 | Other | lineage4.8 | None | SRR5535715 | HR-TB | lineage2.2.1 | None | ERR4818936 | Other | lineage4.1.2.1 | None | ERR2513632 | Sensitive | lineage4.7 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341313 | HR-TB | None | ERR2514869 | Other | lineage3 | None | SRR5341315 | Sensitive | None | ERR2514977 | Sensitive | lineage3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818908 | Other | La1.2.BCG | None | ERR4818396 | Sensitive | lineage4.1.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR2513317 | Sensitive | lineage4.8 | gb | SRR5341373 | HR-TB | lineage4 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | SRR6046210 | Other | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821946 | Sensitive | lineage2.2.1 | gb | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6257066 | MDR-TB | lineage4.3.3 | None | SRR6045399 | Other | None | ERR4830353 | Other | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323045 | HR-TB | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR036207 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR1063859 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063862 | HR-TB | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4028196 | Sensitive | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400529 | Other | lineage3 | None | ERR4407557 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769516 | Other | La1.3 | None | ERR4769521 | HR-TB | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR736875 | HR-TB | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR6358991 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR9285855 | Sensitive | lineage4.3.4.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1002693 | MDR-TB | lineage4.3.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9787336 | Other | lineage6 | None | SRR10272564 | Sensitive | lineage4.4.1.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1172717 | Other | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR10808805 | Sensitive | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972240 | MDR-TB | lineage2.2.1 | None | SRR11972257 | Other | lineage4 | None | SRR11972392 | MDR-TB | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972158 | MDR-TB | lineage2.2 | None | SRR11972166 | Sensitive | lineage1.1.3.1 | None | SRR11972256 | Pre-XDR-TB | lineage2.2.1 | None | SRR12199469 | Sensitive | lineage1.1.1 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR13986566 | Other | La1.7.1 | None | SRR14088354 | Sensitive | lineage3 | None | SRR14088362 | Sensitive | lineage3 | None |
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