Rv3596c - c.874_876delTTGinsCTC
Drug resistance types
63 Sensitive
30 RR-TB
64 HR-TB
25 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 67 |
| lineage2.2.1 | 23 |
| 48 | |
| lineage4.8 | 7 |
| lineage4.9 | 46 |
| lineage4.6.2.2 | 1 |
| lineage4.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2 | 2 |
| lineage4.7 | 1 |
| lineage4.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3 | 10 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 6 |
| lineage4.9;La1.3 | 2 |
| lineage4.3.4 | 1 |
| lineage1.1.3.1 | 2 |
| lineage4.1.2.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.6.1.2 | 5 |
| La1.8.1 | 2 |
| lineage3.1.1 | 2 |
| lineage4.4.2 | 2 |
| lineage4.4 | 1 |
| La1.4 | 1 |
| La1.7.1 | 2 |
| lineage3.1.3 | 1 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage2.1 | 1 |
| lineage3.1 | 1 |
| lineage4.5 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage6 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 259 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6044835 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045892 | Sensitive | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046133 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | SRR6982246 | Sensitive | lineage4 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7535082 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323066 | Sensitive | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR036207 | Other | lineage4.9 | None | ERR067699 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR4024991 | Other | None | ERR4596910 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769495 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6358979 | Other | None | ERR6866410 | Sensitive | None | ERR6866022 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR6866639 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1180440 | Other | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173777 | Other | lineage4 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1180446 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801749 | Sensitive | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR16156775 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16278274 | Other | La1.4 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR21469201 | Other | La1.7.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815310 | Other | None | ERR4815777 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675270 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR4815550 | Other | lineage4 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675246 | Sensitive | lineage4 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817069 | RR-TB | None | ERR212001 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2432997 | Other | lineage4.8 | None | ERR4818086 | Sensitive | lineage4.8 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR5341366 | Sensitive | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819357 | Other | lineage4.9 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4819772 | RR-TB | lineage1.1.3.1 | None | SRR5341425 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR1023509 | Other | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045519 | HR-TB | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | ERR4821334 | RR-TB | lineage4.1.3 | None |
|---|
