TB-Profiler result

Run: SRR10315558
Summary

Run ID: SRR10315558

Sample name:

Date: 02-04-2023 17:09:44

Number of reads: 3764194

Percentage reads mapped: 63.62

Strain: lineage2.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
mshA 576108 p.Ala254Gly missense_variant 0.34
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 0.11
rpoB 761027 c.1221A>G synonymous_variant 0.15
rpoB 761036 c.1230G>C synonymous_variant 0.13
rpoB 761037 c.1231T>C synonymous_variant 0.13
rpoB 761057 c.1251G>C synonymous_variant 0.14
rpoB 761064 p.Ala420Ser missense_variant 0.15
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.22
rpoB 761102 c.1296A>G synonymous_variant 0.22
rpoB 761126 c.1320G>C synonymous_variant 0.2
rpoB 761132 c.1326G>T synonymous_variant 0.2
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.2
rpoB 761150 c.1344A>T synonymous_variant 0.16
rpoB 761153 c.1347G>C synonymous_variant 0.15
rpoB 762002 c.2196C>G synonymous_variant 0.17
rpoB 762003 p.Asn733Gln missense_variant 0.17
rpoB 762011 c.2205G>C synonymous_variant 0.17
rpoB 762015 p.Glu737Gln missense_variant 0.16
rpoB 762020 p.Glu738Asp missense_variant 0.16
rpoB 762026 c.2220G>C synonymous_variant 0.18
rpoB 762030 p.Thr742Ser missense_variant 0.18
rpoB 762053 c.2247T>C synonymous_variant 0.19
rpoB 762057 p.Ile751Val missense_variant 0.2
rpoB 762062 c.2256T>C synonymous_variant 0.2
rpoB 762065 c.2259T>C synonymous_variant 0.19
rpoB 762068 c.2262C>T synonymous_variant 0.19
rpoB 762080 c.2274G>C synonymous_variant 0.2
rpoB 762083 c.2277T>C synonymous_variant 0.19
rpoB 762084 p.Ala760Pro missense_variant 0.19
rpoB 762101 c.2295C>G synonymous_variant 0.24
rpoB 762114 p.Ile770Val missense_variant 0.2
rpoB 762122 p.Asp772Glu missense_variant 0.19
rpoB 762128 c.2322G>C synonymous_variant 0.19
rpoB 762140 c.2334G>C synonymous_variant 0.19
rpoB 762143 c.2337T>C synonymous_variant 0.19
rpoB 762149 c.2343G>C synonymous_variant 0.21
rpoB 762156 p.Val784Ile missense_variant 0.23
rpoB 762176 c.2370T>C synonymous_variant 0.21
rpoB 762177 p.Arg791Asp missense_variant 0.19
rpoB 762181 p.Asp792Ala missense_variant 0.2
rpoB 762185 c.2379G>C synonymous_variant 0.21
rpoB 762209 c.2403C>G synonymous_variant 0.22
rpoB 762212 c.2406G>C synonymous_variant 0.23
rpoB 762233 c.2427G>C synonymous_variant 0.24
rpoB 762245 c.2439G>C synonymous_variant 0.21
rpoB 762251 c.2445G>C synonymous_variant 0.19
rpoB 762254 c.2448T>C synonymous_variant 0.2
rpoB 762257 c.2451C>G synonymous_variant 0.2
rpoB 762275 c.2469C>G synonymous_variant 0.22
rpoB 762284 c.2478G>C synonymous_variant 0.17
rpoB 762293 c.2487T>C synonymous_variant 0.17
rpoC 762863 c.-507T>C upstream_gene_variant 0.12
rpoC 762866 c.-504C>G upstream_gene_variant 0.13
rpoB 762879 p.Met1025Leu missense_variant 0.13
rpoC 762899 c.-471G>C upstream_gene_variant 0.12
rpoB 762909 p.Ile1035Leu missense_variant 0.12
rpoC 762917 c.-453C>G upstream_gene_variant 0.12
rpoC 762923 c.-447C>G upstream_gene_variant 0.12
rpoC 762929 c.-441G>T upstream_gene_variant 0.12
rpoC 762932 c.-438G>C upstream_gene_variant 0.12
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763456 c.87A>G synonymous_variant 0.16
rpoC 763468 c.99G>C synonymous_variant 0.19
rpoC 763483 c.114G>C synonymous_variant 0.22
rpoC 763486 c.117T>C synonymous_variant 0.22
rpoC 763495 c.126G>A synonymous_variant 0.27
rpoC 763504 c.135C>G synonymous_variant 0.3
rpoC 763507 c.138G>C synonymous_variant 0.32
rpoC 763528 c.159G>T synonymous_variant 0.31
rpoC 763534 c.165T>C synonymous_variant 0.34
rpoC 763537 c.168C>G synonymous_variant 0.36
rpoC 763546 c.177A>G synonymous_variant 0.38
rpoC 763573 c.204G>C synonymous_variant 0.41
rpoC 763594 c.225C>T synonymous_variant 0.42
rpoC 763633 c.264T>C synonymous_variant 0.4
rpoC 763660 c.291T>C synonymous_variant 0.33
rpoC 763666 c.297G>T synonymous_variant 0.34
rpoC 763672 c.303C>G synonymous_variant 0.34
rpoC 763696 c.327T>C synonymous_variant 0.27
rpoC 763699 c.330G>C synonymous_variant 0.25
rpoC 763708 c.339G>C synonymous_variant 0.22
rpoC 763714 c.345G>C synonymous_variant 0.19
rpoC 763717 c.348T>C synonymous_variant 0.2
rpoC 763729 c.360G>C synonymous_variant 0.18
rpoC 763732 c.363C>G synonymous_variant 0.17
rpoC 763744 c.375G>C synonymous_variant 0.11
rpoC 763751 p.Ile128Val missense_variant 0.11
rpoC 764470 c.1101C>G synonymous_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.17
rpoC 764491 c.1122G>C synonymous_variant 0.18
rpoC 764497 c.1128A>G synonymous_variant 0.18
rpoC 764498 p.Ser377Ala missense_variant 0.18
rpoC 764503 c.1134G>C synonymous_variant 0.18
rpoC 764512 c.1143G>C synonymous_variant 0.2
rpoC 764521 c.1152T>C synonymous_variant 0.2
rpoC 764536 c.1167G>C synonymous_variant 0.23
rpoC 764545 c.1176C>G synonymous_variant 0.3
rpoC 764548 c.1179G>C synonymous_variant 0.31
rpoC 764551 c.1182G>C synonymous_variant 0.33
rpoC 764566 c.1197C>G synonymous_variant 0.36
rpoC 764575 c.1206T>C synonymous_variant 0.4
rpoC 764581 c.1212T>C synonymous_variant 0.39
rpoC 764582 p.Leu405Met missense_variant 0.4
rpoC 764605 c.1236G>C synonymous_variant 0.4
rpoC 764611 c.1242G>T synonymous_variant 0.4
rpoC 764620 c.1251G>C synonymous_variant 0.38
rpoC 764635 c.1266C>G synonymous_variant 0.36
rpoC 764644 c.1275G>C synonymous_variant 0.33
rpoC 764646 p.Gly426Ala missense_variant 0.31
rpoC 764650 c.1281G>T synonymous_variant 0.3
rpoC 764653 c.1284G>C synonymous_variant 0.29
rpoC 764656 c.1287C>G synonymous_variant 0.29
rpoC 764662 c.1293G>C synonymous_variant 0.29
rpoC 764668 c.1299C>T synonymous_variant 0.29
rpoC 764701 c.1332C>G synonymous_variant 0.23
rpoC 764705 p.Leu446Ala missense_variant 0.23
rpoC 764722 c.1353G>C synonymous_variant 0.2
rpoC 764746 c.1377G>C synonymous_variant 0.18
rpoC 764752 c.1383G>C synonymous_variant 0.15
rpoC 764758 c.1389C>G synonymous_variant 0.13
rpoC 764858 c.1489T>C synonymous_variant 0.14
rpoC 764872 c.1503A>G synonymous_variant 0.11
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781793 c.234G>C synonymous_variant 0.15
rpsL 781796 p.Met79Ile missense_variant 0.15
rpsL 781802 c.243G>C synonymous_variant 0.17
rpsL 781808 c.249C>T synonymous_variant 0.15
rpsL 781811 c.252C>T synonymous_variant 0.16
rpsL 781817 c.258G>T synonymous_variant 0.17
rpsL 781832 c.273T>G synonymous_variant 0.16
rpsL 781838 c.279G>T synonymous_variant 0.17
rpsL 781859 c.300T>C synonymous_variant 0.16
rpsL 781862 c.303G>C synonymous_variant 0.16
rpsL 781865 c.306G>C synonymous_variant 0.16
rpsL 781868 c.309T>C synonymous_variant 0.16
rpsL 781871 c.312G>C synonymous_variant 0.16
rpsL 781892 c.333A>G synonymous_variant 0.14
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.12
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.12
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.13
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.13
rrs 1471991 n.146T>C non_coding_transcript_exon_variant 0.13
rrs 1471997 n.152T>C non_coding_transcript_exon_variant 0.14
rrs 1471998 n.153G>T non_coding_transcript_exon_variant 0.14
rrs 1472005 n.160T>G non_coding_transcript_exon_variant 0.13
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.44
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.43
rrs 1472107 n.262A>G non_coding_transcript_exon_variant 0.43
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.43
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.43
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.42
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.64
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.64
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.66
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.63
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.6
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.31
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.28
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.28
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.28
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.3
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.27
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.3
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.3
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.3
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.35
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.35
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.36
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.35
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.2
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.38
rrs 1472494 n.649A>T non_coding_transcript_exon_variant 0.4
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.39
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.42
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.52
rrs 1472508 n.663T>C non_coding_transcript_exon_variant 0.53
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.7
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.69
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.69
rrs 1472583 n.738T>A non_coding_transcript_exon_variant 0.68
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.7
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.73
rrs 1472673 n.828T>C non_coding_transcript_exon_variant 0.67
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.66
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.65
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.66
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.66
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.68
rrs 1472793 n.948A>C non_coding_transcript_exon_variant 0.53
rrs 1472803 n.958T>C non_coding_transcript_exon_variant 0.53
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.52
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.52
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.53
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.51
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.52
rrs 1472844 n.999C>A non_coding_transcript_exon_variant 0.48
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.44
rrs 1472851 n.1006A>G non_coding_transcript_exon_variant 0.49
rrs 1472856 n.1011T>C non_coding_transcript_exon_variant 0.5
rrs 1472862 n.1017T>C non_coding_transcript_exon_variant 0.49
rrs 1472863 n.1018T>C non_coding_transcript_exon_variant 0.51
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.54
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.54
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.56
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.6
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.59
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.59
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.59
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.59
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.59
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.58
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.6
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.62
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.71
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.66
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.66
rrs 1473062 n.1217T>G non_coding_transcript_exon_variant 0.67
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.68
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.68
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 0.68
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.67
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.67
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.67
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.68
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 0.68
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.68
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.68
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.71
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.71
rrs 1473201 n.1356A>T non_coding_transcript_exon_variant 0.68
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.68
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.73
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.71
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.67
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.6
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.59
rrl 1474166 n.509G>C non_coding_transcript_exon_variant 0.14
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.15
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.15
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.15
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 0.16
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.17
rrl 1474232 n.575C>G non_coding_transcript_exon_variant 0.18
rrl 1474239 n.582G>C non_coding_transcript_exon_variant 0.18
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.14
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.13
rrl 1474476 n.819C>G non_coding_transcript_exon_variant 0.23
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.24
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.25
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.25
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.25
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.25
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.24
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.24
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.25
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.25
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.25
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.25
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.24
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.25
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.24
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.24
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.24
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.28
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.3
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.29
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.28
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.29
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.28
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.28
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.29
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.29
rrl 1474651 n.995delT non_coding_transcript_exon_variant 0.33
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.35
rrl 1474662 n.1005C>G non_coding_transcript_exon_variant 0.34
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.44
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.47
rrl 1474688 n.1031G>C non_coding_transcript_exon_variant 0.54
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.55
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.63
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.59
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.6
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.6
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.6
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.61
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.65
rrl 1474777 n.1120T>G non_coding_transcript_exon_variant 0.66
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.66
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.66
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.66
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.67
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.67
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.68
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.64
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.6
rrl 1474896 n.1239A>T non_coding_transcript_exon_variant 0.48
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.39
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.38
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.35
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.22
rrl 1474934 n.1277C>T non_coding_transcript_exon_variant 0.22
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.13
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.35
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.37
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.38
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.44
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.45
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.46
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.45
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.45
rrl 1475760 n.2103_2104insACATTT non_coding_transcript_exon_variant 0.46
rrl 1475763 n.2106C>G non_coding_transcript_exon_variant 0.45
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.45
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.44
rrl 1475766 n.2109G>T non_coding_transcript_exon_variant 0.44
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.47
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.53
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.55
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.59
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.71
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.7
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.7
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.7
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.72
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.69
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.69
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.67
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.62
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.58
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.57
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 0.57
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.58
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.58
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.58
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.32
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.31
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.31
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.3
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.31
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.31
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.31
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.31
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.31
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.16
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.31
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.31
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.31
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.3
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.3
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.34
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.39
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.38
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.44
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.49
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.48
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.49
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.48
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.48
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.48
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.45
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.34
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.34
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.34
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.34
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.34
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.34
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.34
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.36
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.36
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.37
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.63
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.63
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.66
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.53
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.49
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.48
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.45
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.45
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.45
rrl 1476530 n.2873C>A non_coding_transcript_exon_variant 0.45
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.43
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.42
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.42
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.43
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.21
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.2
rpsA 1833697 c.156C>G synonymous_variant 0.13
rpsA 1833706 c.165C>T synonymous_variant 0.14
rpsA 1833709 c.168C>T synonymous_variant 0.14
rpsA 1833733 c.192C>G synonymous_variant 0.17
rpsA 1833734 p.Ala65Ser missense_variant 0.17
rpsA 1833742 c.201A>G synonymous_variant 0.17
rpsA 1833745 c.204G>C synonymous_variant 0.17
rpsA 1833748 c.207C>G synonymous_variant 0.17
rpsA 1833781 c.240T>C synonymous_variant 0.12
rpsA 1833782 p.Ser81Ala missense_variant 0.12
rpsA 1833790 c.249T>C synonymous_variant 0.12
rpsA 1833952 c.411C>T synonymous_variant 0.19
rpsA 1833955 c.414G>C synonymous_variant 0.19
rpsA 1833970 c.429G>C synonymous_variant 0.16
rpsA 1833973 c.432G>C synonymous_variant 0.15
rpsA 1833976 c.435C>T synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.17
rpsA 1833988 c.447C>G synonymous_variant 0.17
rpsA 1833994 c.453G>C synonymous_variant 0.17
rpsA 1833997 c.456G>C synonymous_variant 0.17
rpsA 1834000 c.459G>C synonymous_variant 0.17
rpsA 1834012 c.471G>C synonymous_variant 0.16
rpsA 1834015 c.474G>C synonymous_variant 0.15
rpsA 1834024 c.483G>C synonymous_variant 0.15
rpsA 1834034 p.Ile165Val missense_variant 0.15
rpsA 1834046 p.Ile169Leu missense_variant 0.16
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 0.12
rpsA 1834264 c.723G>C synonymous_variant 0.11
rpsA 1834298 p.Gln253Glu missense_variant 0.12
rpsA 1834303 c.762T>C synonymous_variant 0.12
rpsA 1834306 c.765T>C synonymous_variant 0.12
rpsA 1834307 p.Asp256Gln missense_variant 0.11
rpsA 1834312 c.771G>A synonymous_variant 0.11
rpsA 1834327 c.786G>C synonymous_variant 0.14
rpsA 1834348 c.807T>C synonymous_variant 0.14
rpsA 1834354 c.813G>T synonymous_variant 0.12
rpsA 1834357 c.816T>C synonymous_variant 0.12
rpsA 1834360 c.819G>C synonymous_variant 0.12
rpsA 1834361 c.820T>C synonymous_variant 0.12
rpsA 1834366 c.825A>G synonymous_variant 0.12
rpsA 1834369 c.828C>G synonymous_variant 0.12
rpsA 1834378 c.837T>C synonymous_variant 0.15
rpsA 1834395 p.Arg285Gln missense_variant 0.17
rpsA 1834399 p.His286Gln missense_variant 0.17
rpsA 1834408 c.867C>G synonymous_variant 0.15
rpsA 1834411 c.870T>G synonymous_variant 0.14
rpsA 1834415 p.Ala292Gln missense_variant 0.14
rpsA 1834423 c.882G>C synonymous_variant 0.13
rpsA 1834427 p.Ile296Val missense_variant 0.13
rpsA 1834432 c.891G>T synonymous_variant 0.13
rpsA 1834435 c.894G>C synonymous_variant 0.12
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.14
rpsA 1834459 c.918G>C synonymous_variant 0.14
rpsA 1834465 c.924T>C synonymous_variant 0.15
rpsA 1834468 c.927A>G synonymous_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2103226 c.-184C>G upstream_gene_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv2752c 3065446 p.Ile249Ser missense_variant 0.12
ald 3086739 c.-81G>A upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339734 p.Ala206Gly missense_variant 0.28
fbiD 3339736 p.Thr207Pro missense_variant 0.15
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
clpC1 4039481 p.Ala408Ser missense_variant 0.11
clpC1 4039517 c.1188C>G synonymous_variant 0.13
clpC1 4039526 c.1179G>C synonymous_variant 0.13
clpC1 4039532 p.Asn391Ser missense_variant 0.12
clpC1 4039541 c.1164C>G synonymous_variant 0.13
clpC1 4039570 p.Met379Leu missense_variant 0.17
clpC1 4039574 p.Ala377Ser missense_variant 0.16
clpC1 4039577 c.1128T>C synonymous_variant 0.17
clpC1 4039586 c.1119G>C synonymous_variant 0.19
clpC1 4039589 c.1116G>C synonymous_variant 0.19
clpC1 4039601 c.1104G>C synonymous_variant 0.2
clpC1 4039622 c.1083C>T synonymous_variant 0.23
clpC1 4039647 p.Glu353Pro missense_variant 0.14
clpC1 4039651 p.Val352Leu missense_variant 0.14
clpC1 4039654 p.Thr351Ser missense_variant 0.14
clpC1 4039655 c.1050G>C synonymous_variant 0.14
clpC1 4039661 p.Gly348Ala missense_variant 0.14
clpC1 4039664 c.1041G>C synonymous_variant 0.15
clpC1 4039670 p.Val345Ile missense_variant 0.15
clpC1 4039673 c.1032G>C synonymous_variant 0.16
clpC1 4039709 p.Ile332Leu missense_variant 0.19
clpC1 4039714 p.Tyr331His missense_variant 0.19
clpC1 4039724 c.981A>G synonymous_variant 0.2
clpC1 4039733 c.972G>C synonymous_variant 0.21
clpC1 4039739 c.966C>G synonymous_variant 0.21
clpC1 4039742 c.963C>T synonymous_variant 0.19
clpC1 4039751 c.954A>G synonymous_variant 0.2
clpC1 4039754 c.951G>C synonymous_variant 0.19
clpC1 4039757 c.948A>G synonymous_variant 0.21
clpC1 4039766 c.939T>C synonymous_variant 0.21
clpC1 4039773 p.Lys311Met missense_variant 0.19
clpC1 4039778 c.927A>G synonymous_variant 0.19
clpC1 4039781 c.924G>C synonymous_variant 0.2
clpC1 4039817 c.888A>C synonymous_variant 0.2
clpC1 4039820 c.885T>G synonymous_variant 0.2
clpC1 4039823 c.882T>C synonymous_variant 0.2
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.19
clpC1 4039832 c.873C>G synonymous_variant 0.2
clpC1 4039850 c.855T>C synonymous_variant 0.2
clpC1 4039858 p.Ile283Val missense_variant 0.19
clpC1 4039865 c.840T>C synonymous_variant 0.19
clpC1 4039875 p.Asn277Arg missense_variant 0.16
clpC1 4039889 c.816G>C synonymous_variant 0.15
clpC1 4039898 c.807C>G synonymous_variant 0.15
clpC1 4039904 c.801A>G synonymous_variant 0.14
clpC1 4039958 c.747G>C synonymous_variant 0.12
clpC1 4039967 p.Gln246His missense_variant 0.13
clpC1 4039982 c.723G>C synonymous_variant 0.17
clpC1 4040000 p.His235Lys missense_variant 0.2
clpC1 4040003 c.702G>C synonymous_variant 0.2
clpC1 4040015 c.690G>C synonymous_variant 0.19
clpC1 4040024 c.681A>G synonymous_variant 0.2
clpC1 4040033 c.672G>C synonymous_variant 0.19
clpC1 4040063 c.642G>C synonymous_variant 0.18
clpC1 4040066 c.639G>C synonymous_variant 0.18
clpC1 4040087 c.618G>C synonymous_variant 0.19
clpC1 4040090 c.615T>G synonymous_variant 0.18
clpC1 4040117 c.588A>G synonymous_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.4
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0