EBG00000313339 - n.2245T>C
Drug resistance types
38 Sensitive
21 RR-TB
24 HR-TB
24 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
172 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 16 |
| lineage3 | 42 |
| lineage1.2.2.2 | 8 |
| lineage1.1.3.1 | 4 |
| lineage2.2.1 | 26 |
| lineage3.1.2.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.6.2.2 | 3 |
| lineage4.9 | 41 |
| 5 | |
| lineage4.4.1.1 | 7 |
| lineage4.1.2.1 | 27 |
| lineage4.1.1.3 | 8 |
| lineage4.2.1 | 3 |
| lineage6.1.3 | 1 |
| lineage4.7 | 3 |
| lineage1.1.1.1 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.2.2.2 | 4 |
| lineage4.8.2 | 2 |
| lineage3.1.2.2 | 2 |
| lineage4 | 9 |
| lineage3.1.1 | 9 |
| lineage1.1.3.3 | 1 |
| lineage4.1.4 | 1 |
| lineage2.2.1.1 | 4 |
| La1.3 | 5 |
| lineage4.3.3 | 6 |
| lineage4.3.4.1 | 2 |
| La1.2 | 4 |
| lineage1.2.1.2.1 | 2 |
| La1.8.1 | 3 |
| lineage2.2.2 | 2 |
| lineage4.1.1 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage4.4.2 | 3 |
| lineage4.7;lineage4.3.4.2 | 1 |
| lineage5.1.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage6 | 1 |
| lineage1.2.1.2 | 2 |
| La1.4 | 1 |
| lineage1.1.2 | 8 |
| lineage1.1.1 | 3 |
| lineage4.1 | 1 |
| lineage5 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.5 | 7 |
| lineage4.3.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1.2 | 2 |
| lineage1.2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 297 |
Geographic prevalence
Country level data for this variant is available for 78 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4820484 | Other | lineage4.8 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2514576 | Other | lineage4.8 | gb | ERR2514613 | Other | lineage4.8 | gb | SRR5341295 | Sensitive | lineage1.2.2.2 | in | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4820492 | Other | lineage2.2.1 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR4820889 | Other | lineage3 | gb | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR2514896 | Other | lineage3 | gb | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR4820026 | Other | lineage3 | None | ERR4820073 | Sensitive | lineage4.9 | None | ERR2515022 | Sensitive | lineage3 | None | ERR4820130 | Other | lineage3 | None | ERR4820107 | RR-TB | None | ERR4820161 | Other | lineage3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4821007 | RR-TB | lineage1.2.2.2 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4820193 | Other | lineage3 | None | ERR4820944 | Other | lineage4.1.1.3 | gb | ERR4821154 | Other | lineage2.2.1 | gb | ERR4821136 | Other | lineage4.2.1 | gb | SRR6045496 | Other | lineage6.1.3 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821519 | Other | lineage3 | gb | ERR4821288 | Other | lineage4.7 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4821477 | Other | lineage4.8 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821579 | Other | lineage4.3.4.2 | gb | ERR4821564 | Sensitive | lineage4.2.2.2 | None | ERR4821551 | Sensitive | lineage4.9 | None | ERR4822182 | Sensitive | lineage4.9 | None | SRR6045726 | Other | lineage3 | None | ERR4821725 | Other | lineage4.8.2 | gb | SRR6046115 | Sensitive | lineage3 | None | SRR6045642 | Other | lineage3.1.2.2 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821718 | Other | lineage4.2.2.2 | gb | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818660 | Sensitive | lineage4.1.1.3 | dj | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6046152 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR5818684 | Other | lineage4.2.2.2 | None | SRR6045899 | Other | lineage4.1.2.1 | gb | SRR6045124 | Other | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046508 | Sensitive | lineage3.1.2.2 | gb | ERR4828962 | Other | lineage4.1.4 | it | SRR6046433 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | ERR4830493 | MDR-TB | lineage2.2.1 | None | ERR4830864 | MDR-TB | lineage4.4.1.1 | sz | SRR6152838 | Other | lineage2.2.1.1 | ca | SRR6046737 | Other | lineage4.9 | None | SRR6046602 | HR-TB | lineage4.1.2.1 | gb | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6257097 | Pre-XDR-TB | lineage2.2.1 | ru | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR3077969 | Other | La1.3 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | SRR6982246 | Sensitive | lineage4 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR7851312 | Other | La1.2 | None | SRR7517755 | HR-TB | lineage1.2.1.2.1 | None | SRR7517777 | MDR-TB | lineage2.2.1 | th | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | SRR8600288 | Other | La1.8.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | ERR10796590 | Other | lineage4.9 | None | DRR184903 | Sensitive | lineage2.2.2 | None | ERR10796597 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796623 | Other | lineage4.1.1 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4024892 | Sensitive | lineage4.1.2.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4627369 | Other | La1.8.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769453 | Other | La1.3 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR5866570 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4772206 | Other | La1.2 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769517 | Other | La1.3 | None | ERR4796257 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796941 | MDR-TB | lineage1.2.2.2 | in | ERR4811101 | Other | lineage4.4.2 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6197028 | Other | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR6197033 | Other | lineage4.7 | None | ERR6865855 | Sensitive | lineage4.1.2.1 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR6197041 | MDR-TB | lineage4.3.4.2 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR909753 | Other | lineage5.1.1 | None | ERR7737736 | MDR-TB | lineage2.2.1 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR7737918 | MDR-TB | lineage4.2.2.1 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9787033 | Sensitive | lineage6 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR11349180 | MDR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1181130 | Other | lineage4.1.1.3 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR12006547 | Sensitive | lineage1.2.1.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR13199734 | Other | La1.2 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR15522850 | HR-TB | lineage1.1.2 | None | SRR16156775 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR18213721 | Other | lineage4.8 | None | ERR4815278 | Other | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR6207283 | Sensitive | lineage4.3.3 | None | SRR18715102 | MDR-TB | lineage2.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR4815143 | HR-TB | lineage4.2.2.2 | None | ERR4815613 | Other | lineage3 | None | ERR4814415 | Other | lineage3.1.1 | None | ERR4815310 | Other | None | ERR4814362 | Other | lineage4.8 | None | ERR4815714 | Sensitive | lineage4.1.2.1 | gb | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4814610 | Sensitive | lineage3 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814623 | Other | lineage4.8 | None | ERR4814801 | Other | lineage4.8 | gb | ERR4812763 | Other | lineage2.2.1 | None | SRR8003011 | MDR-TB | lineage4.8 | in | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR4815502 | Other | lineage4.1 | None | ERR4814821 | Other | lineage2.2.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4815550 | Other | lineage4 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4814905 | Other | lineage4.8 | gb | ERR4814976 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815065 | Other | lineage4.1.2.1 | gb | ERR4815101 | Other | lineage3 | gb | ERR4816928 | HR-TB | lineage1.2.2.2 | None | ERR4815849 | Other | lineage3.1.1 | None | ERR4815836 | Other | lineage4.8.2 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4817464 | Other | lineage3.1.1 | None | ERR4815898 | Other | lineage3 | None | ERR4816982 | Other | lineage4 | None | ERR4816988 | Other | lineage3 | gb | ERR4816283 | Other | lineage4.1.2.1 | None | ERR4817055 | Other | lineage4.1.2.1 | None | ERR4816186 | Sensitive | lineage3 | gb | ERR4816249 | Other | lineage1.1.2 | gb | ERR4816397 | Other | lineage1.1.2 | None | ERR4816322 | Other | lineage4.9 | None | ERR4817070 | Other | lineage1.1.2 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR2446509 | Other | lineage3 | nl | ERR4816417 | Other | lineage4.9 | None | ERR4817110 | Other | lineage4.1.1.3 | None | ERR4817109 | Other | lineage3 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR2179662 | Sensitive | lineage4.5 | cn | ERR4816571 | Other | lineage1.1.2 | None | ERR4816779 | Other | lineage3 | gb | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816677 | Other | lineage4.5 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816654 | Sensitive | lineage3.1.1 | gb | ERR4817189 | Other | lineage4.7 | None | ERR4816756 | RR-TB | None | ERR4817497 | Other | lineage1.1.2 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4817434 | Other | lineage3 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR4818698 | HR-TB | lineage2.2.1 | gb | ERR4816883 | Other | lineage4.5 | None | ERR4817306 | Other | lineage3 | gb | ERR4817735 | Other | lineage4.8 | None | ERR4817670 | Sensitive | lineage4.8 | gb | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2512986 | Other | lineage3 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR2510654 | Pre-XDR-TB | lineage2.2.1 | it | ERR4817917 | Other | lineage2.2.1 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817941 | Other | lineage4.8 | gb | ERR4817948 | Other | lineage3 | gb | ERR2512599 | Other | lineage3 | gb | ERR2179696 | Sensitive | lineage4.4.2 | cn | ERR4818831 | Other | lineage3 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR2513589 | Other | lineage3.1.3 | None | ERR3276144 | Other | lineage3 | nl | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818265 | Other | lineage4.1.2.1 | None | ERR4818283 | Sensitive | lineage4.5 | gb | SRR1723899 | Sensitive | lineage4.5 | cn | ERR2512660 | Sensitive | lineage3 | gb | ERR4818432 | HR-TB | lineage4.5 | gb | ERR2513273 | Other | lineage4.1.2.1 | None | ERR4818476 | HR-TB | lineage4.6.2.2 | gb | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4818538 | Other | lineage3 | gb | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4818545 | Other | lineage4.1.2 | gb | ERR4817554 | Other | lineage1.1.1 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | ERR4818952 | Other | lineage3 | None | ERR2513509 | Sensitive | lineage3 | gb | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4817619 | Other | lineage4.1.2.1 | gb | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR2513657 | Other | lineage1.2.2.2 | gb | ERR4819171 | Sensitive | lineage1.2.2.2 | gb | ERR4819203 | RR-TB | lineage1.2.2.1 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR2513910 | Other | lineage3 | gb | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4820290 | Other | lineage3 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819425 | Other | lineage3 | gb | ERR4820335 | Other | lineage4.1.2.1 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4819503 | Other | lineage3 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819684 | Sensitive | lineage3 | gb | ERR2514533 | Other | lineage4.9 | None | ERR4820787 | Other | lineage3.1.1 | gb |
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