TB-Profiler result

Run: ERR4822138
Summary

Run ID: ERR4822138

Sample name:

Date: 01-04-2023 17:39:34

Number of reads: 878132

Percentage reads mapped: 58.79

Strain: lineage4.1.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1 Euro-American T;X;H None 1.0
lineage4.1.2 Euro-American T;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.72 streptomycin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.86 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 0.16
rpoC 763052 c.-318G>T upstream_gene_variant 0.2
rpoC 763053 c.-317T>C upstream_gene_variant 0.19
rpoC 763058 c.-312C>G upstream_gene_variant 0.19
rpoC 763070 c.-300T>C upstream_gene_variant 0.18
rpoB 763074 p.Thr1090Val missense_variant 0.19
rpoC 763079 c.-291C>T upstream_gene_variant 0.19
rpoC 763082 c.-288C>A upstream_gene_variant 0.18
rpoC 763085 c.-285C>T upstream_gene_variant 0.18
rpoC 763088 c.-282C>G upstream_gene_variant 0.18
rpoC 763094 c.-276G>C upstream_gene_variant 0.17
rpoC 763109 c.-261C>G upstream_gene_variant 0.16
rpoC 763115 c.-255T>C upstream_gene_variant 0.15
rpoB 763118 p.Glu1104Asp missense_variant 0.15
rpoC 763121 c.-249C>T upstream_gene_variant 0.15
rpoB 763130 p.Glu1108Asp missense_variant 0.15
rpoC 763148 c.-222G>C upstream_gene_variant 0.14
rpoC 763594 c.225C>T synonymous_variant 0.11
rpoC 763603 c.234C>T synonymous_variant 0.14
rpoC 763609 c.240C>T synonymous_variant 0.14
rpoC 763619 p.Arg84Lys missense_variant 0.14
rpoC 763622 p.Ala85Ser missense_variant 0.14
rpoC 763633 c.264T>C synonymous_variant 0.15
rpoC 763642 c.273G>C synonymous_variant 0.14
rpoC 763657 c.288G>A synonymous_variant 0.14
rpoC 763660 c.291T>G synonymous_variant 0.15
rpoC 763666 c.297G>T synonymous_variant 0.15
rpoC 763669 c.300C>A synonymous_variant 0.14
rpoC 763672 c.303C>G synonymous_variant 0.14
rpoC 763699 c.330G>T synonymous_variant 0.14
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471850 n.5G>T non_coding_transcript_exon_variant 0.13
rrs 1471852 n.7T>A non_coding_transcript_exon_variant 0.18
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.73
rrs 1471926 n.81C>T non_coding_transcript_exon_variant 0.74
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.74
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.82
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.82
rrs 1472027 n.183_189delACGGGAT non_coding_transcript_exon_variant 0.67
rrs 1472037 n.192_193insCTTTAG non_coding_transcript_exon_variant 0.73
rrs 1472057 n.212C>T non_coding_transcript_exon_variant 0.75
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.73
rrs 1472062 n.217G>T non_coding_transcript_exon_variant 0.72
rrs 1472069 n.224G>A non_coding_transcript_exon_variant 0.77
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.83
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.84
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.87
rrs 1472138 n.293C>A non_coding_transcript_exon_variant 0.84
rrs 1472147 n.302G>T non_coding_transcript_exon_variant 0.8
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 0.82
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.82
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.84
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 0.73
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 0.73
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.73
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.73
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.73
rrs 1472296 n.454_458delTCCGG non_coding_transcript_exon_variant 0.73
rrs 1472303 n.458G>C non_coding_transcript_exon_variant 0.72
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.71
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.71
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.76
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.85
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.85
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.85
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.85
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.85
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.85
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.86
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.86
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.87
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.89
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.91
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.91
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.89
rrs 1472504 n.659A>T non_coding_transcript_exon_variant 0.88
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.88
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.9
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.85
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.83
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.84
rrs 1472574 n.729T>A non_coding_transcript_exon_variant 0.84
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.87
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.86
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.87
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.89
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.85
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.86
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 0.91
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.91
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.87
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.74
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.7
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.69
rrs 1472843 n.998_999insT non_coding_transcript_exon_variant 0.63
rrs 1472846 n.1002delG non_coding_transcript_exon_variant 0.63
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.63
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.63
rrs 1472855 n.1011_1012insGT non_coding_transcript_exon_variant 0.67
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 0.73
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.76
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.84
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.93
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.94
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.93
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.91
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.9
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.74
rrs 1473091 n.1246G>C non_coding_transcript_exon_variant 0.73
rrs 1473094 n.1249T>A non_coding_transcript_exon_variant 0.75
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.75
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.8
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.77
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.79
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.72
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.76
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.75
rrs 1473120 n.1275C>G non_coding_transcript_exon_variant 0.71
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.76
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.73
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.75
rrs 1473135 n.1290C>T non_coding_transcript_exon_variant 0.77
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.8
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.79
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.76
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.86
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.84
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.83
rrl 1473719 n.62G>A non_coding_transcript_exon_variant 0.16
rrl 1474123 n.466A>G non_coding_transcript_exon_variant 0.69
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.76
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.8
rrl 1474143 n.486T>C non_coding_transcript_exon_variant 0.81
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.84
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.84
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.89
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.89
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.89
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.88
rrl 1474293 n.637_650delCCTCTCCGGAGGAG non_coding_transcript_exon_variant 0.86
rrl 1474309 n.652G>T non_coding_transcript_exon_variant 0.86
rrl 1474311 n.654_655insT non_coding_transcript_exon_variant 0.86
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.93
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 0.93
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.92
rrl 1474384 n.727C>T non_coding_transcript_exon_variant 0.86
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.78
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.64
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.76
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.77
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 0.75
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.75
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.72
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.72
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.7
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.7
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.7
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.7
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.7
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.68
rrl 1474527 n.870T>G non_coding_transcript_exon_variant 0.68
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.68
rrl 1474542 n.885A>C non_coding_transcript_exon_variant 0.68
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.87
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.88
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.77
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.73
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.76
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.8
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.89
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.88
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 0.88
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.87
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.87
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.86
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.86
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.87
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.87
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.88
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.9
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.87
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.87
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.86
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.83
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.79
rrl 1475514 n.1857G>A non_coding_transcript_exon_variant 0.31
rrl 1475522 n.1865A>T non_coding_transcript_exon_variant 0.31
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.36
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.36
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.33
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 0.33
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.33
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.33
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.36
rrl 1475574 n.1917C>T non_coding_transcript_exon_variant 0.33
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.78
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.91
rrl 1475757 n.2100_2101insG non_coding_transcript_exon_variant 0.91
rrl 1475877 n.2220C>G non_coding_transcript_exon_variant 0.92
rrl 1475878 n.2221T>A non_coding_transcript_exon_variant 0.93
rrl 1475879 n.2222T>C non_coding_transcript_exon_variant 0.93
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.93
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.93
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.92
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.92
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.92
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.91
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.89
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.92
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.8
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.78
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.7
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.5
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.5
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.5
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.31
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.56
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.56
rrl 1476188 n.2531C>T non_coding_transcript_exon_variant 0.56
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.58
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.54
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.54
rrl 1476213 n.2556G>T non_coding_transcript_exon_variant 0.54
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.54
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.54
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.67
rrl 1476234 n.2577G>A non_coding_transcript_exon_variant 0.68
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.68
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.68
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.67
rrl 1476255 n.2598A>T non_coding_transcript_exon_variant 0.67
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.67
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.65
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.65
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.76
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.79
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 0.79
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.79
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.79
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.8
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 0.78
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.95
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.91
rrl 1476523 n.2867delC non_coding_transcript_exon_variant 0.77
rrl 1476535 n.2878G>A non_coding_transcript_exon_variant 0.73
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.72
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.72
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.72
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.18
rpsA 1833949 c.408T>C synonymous_variant 0.24
rpsA 1833953 c.412C>T synonymous_variant 0.23
rpsA 1833961 c.420C>G synonymous_variant 0.22
rpsA 1833964 c.423C>T synonymous_variant 0.23
rpsA 1833967 c.426C>T synonymous_variant 0.24
rpsA 1833970 c.429G>T synonymous_variant 0.24
rpsA 1833976 c.435C>T synonymous_variant 0.27
rpsA 1833979 c.438T>C synonymous_variant 0.26
rpsA 1833988 c.447C>T synonymous_variant 0.3
rpsA 1833994 c.453G>C synonymous_variant 0.31
rpsA 1834003 c.462G>A synonymous_variant 0.31
rpsA 1834012 c.471G>C synonymous_variant 0.3
rpsA 1834015 c.474G>T synonymous_variant 0.3
rpsA 1834025 p.Gln162Glu missense_variant 0.31
rpsA 1834030 c.489C>A synonymous_variant 0.3
rpsA 1834036 c.495C>T synonymous_variant 0.31
rpsA 1834040 p.Lys167Gln missense_variant 0.31
rpsA 1834046 p.Ile169Leu missense_variant 0.29
rpsA 1834051 p.Glu170Asp missense_variant 0.29
rpsA 1834081 c.540C>T synonymous_variant 0.29
rpsA 1834090 c.549G>C synonymous_variant 0.16
rpsA 1834093 c.552G>T synonymous_variant 0.16
rpsA 1834102 c.561T>C synonymous_variant 0.18
rpsA 1834108 c.567C>A synonymous_variant 0.21
rpsA 1834110 p.Trp190Tyr missense_variant 0.17
rpsA 1834285 c.744G>A synonymous_variant 0.11
rpsA 1834327 c.786G>T synonymous_variant 0.1
rpsA 1834330 c.789C>G synonymous_variant 0.1
rpsA 1834468 c.927A>G synonymous_variant 0.26
rpsA 1834474 c.933C>T synonymous_variant 0.29
rpsA 1834483 c.942G>A synonymous_variant 0.28
rpsA 1834486 c.945G>A synonymous_variant 0.29
rpsA 1834489 c.948T>C synonymous_variant 0.3
rpsA 1834495 c.954G>A synonymous_variant 0.27
rpsA 1834504 c.963G>T synonymous_variant 0.3
rpsA 1834522 c.981C>T synonymous_variant 0.31
rpsA 1834523 p.Glu328Gln missense_variant 0.31
rpsA 1834528 c.987T>C synonymous_variant 0.32
rpsA 1834540 c.999G>T synonymous_variant 0.29
rpsA 1834543 c.1002C>A synonymous_variant 0.29
rpsA 1834546 c.1005T>C synonymous_variant 0.29
rpsA 1834552 c.1011G>T synonymous_variant 0.28
rpsA 1834555 c.1014T>C synonymous_variant 0.28
rpsA 1834556 p.Ala339Asn missense_variant 0.27
rpsA 1834561 c.1020C>T synonymous_variant 0.27
rpsA 1834567 p.Asp342Glu missense_variant 0.28
rpsA 1834570 p.Asp343Glu missense_variant 0.27
rpsA 1834573 c.1032G>C synonymous_variant 0.27
rpsA 1834600 c.1059G>C synonymous_variant 0.27
rpsA 1834606 c.1065C>T synonymous_variant 0.28
rpsA 1834612 c.1071G>T synonymous_variant 0.24
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2222891 p.Ile92Val missense_variant 0.12
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
kasA 2518606 c.492G>C synonymous_variant 0.1
kasA 2518609 p.Met165Ile missense_variant 0.11
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
alr 3841546 c.-126C>A upstream_gene_variant 1.0
alr 3841568 c.-148G>A upstream_gene_variant 1.0
alr 3841570 c.-151delA upstream_gene_variant 1.0
alr 3841574 c.-154T>G upstream_gene_variant 1.0
alr 3841578 c.-158G>T upstream_gene_variant 1.0
alr 3841582 c.-162A>G upstream_gene_variant 1.0
alr 3841584 c.-164C>A upstream_gene_variant 1.0
alr 3841589 c.-170delG upstream_gene_variant 1.0
alr 3841612 c.-193_-192insC upstream_gene_variant 1.0
clpC1 4038676 p.Val677Ile missense_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
aftB 4267089 p.Thr583Asn missense_variant 1.0
aftB 4268650 p.Trp63Arg missense_variant 0.11
whiB6 4338595 c.-75delG upstream_gene_variant 1.0