lineage | Count |
---|---|
lineage3 | 70 |
lineage4.2.2.2 | 5 |
lineage2.2.1 | 127 |
lineage4.3.4.2.1 | 6 |
10 | |
lineage4.1.1.3 | 24 |
lineage1.1.2 | 13 |
lineage4.2.2.2;lineage3 | 1 |
lineage4.9 | 62 |
lineage4.4 | 2 |
lineage4.1.2.1 | 67 |
lineage4.4.1.1 | 20 |
lineage3.1.1 | 8 |
lineage4.1.1.3.1 | 4 |
lineage4.8;lineage3 | 1 |
lineage4.1.2 | 12 |
lineage4.7 | 10 |
lineage1.1.3.3 | 1 |
lineage4 | 22 |
lineage4.5 | 8 |
lineage1.2.2.2 | 4 |
lineage4.2.1 | 18 |
lineage3.1.2.2 | 3 |
lineage4.8 | 62 |
lineage4.6.5 | 1 |
lineage2.2.1.1 | 6 |
lineage4.2.1.1 | 2 |
lineage4.3.3 | 27 |
La1.3 | 3 |
lineage4.3.2 | 5 |
lineage2.2 | 8 |
lineage4.1 | 2 |
lineage6.2.1 | 1 |
lineage4.3.4.1 | 10 |
lineage5.1.1 | 2 |
lineage6.3.1 | 2 |
lineage4.3 | 2 |
La1.8.1 | 11 |
lineage4.3.4.2 | 12 |
lineage4.6 | 4 |
lineage4.6.2.2 | 14 |
lineage4.3.2.1 | 3 |
lineage4.2.1;lineage2.2.1 | 1 |
La1.2 | 3 |
lineage1.1.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4.9;lineage1.1 | 2 |
lineage4.9;lineage4.1 | 1 |
lineage4.9;lineage4.3.4 | 1 |
lineage4.1.1 | 5 |
lineage4.3.4 | 1 |
lineage4.4.1.2 | 1 |
lineage6.2.3;lineage1.1.2 | 1 |
lineage2.2.2 | 11 |
lineage4.7;lineage4.3.4.2 | 1 |
lineage4.1.1.2 | 3 |
lineage4.3.1.1 | 2 |
lineage4.4.1.1.1 | 2 |
lineage4.8;lineage4.3.3 | 4 |
lineage4.6.1.2 | 6 |
lineage4.9;lineage2.2.1 | 1 |
La2 | 1 |
lineage4.4.2 | 6 |
lineage4.2.2.1 | 4 |
La1.4 | 2 |
lineage2.2.2;lineage2.2.1 | 1 |
lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
lineage4.2.2 | 2 |
lineage6 | 1 |
lineage1.2.1.2 | 1 |
La1.7.1 | 4 |
lineage1.1.1 | 2 |
lineage4.9;lineage3.1.1 | 1 |
lineage1.1.3 | 3 |
lineage3.1 | 2 |
lineage3.1.2.1 | 6 |
lineage4.8.2 | 3 |
lineage5 | 2 |
lineage3.1.3 | 2 |
lineage1.2.1.1 | 1 |
lineage1 | 1 |
La1.2.BCG | 1 |
lineage4;lineage3 | 1 |
lineage3.1.2 | 1 |
lineage4.8.1 | 1 |
La3 | 1 |
lineage6.1.3 | 1 |
lineage1.1.3.1 | 2 |
lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 778 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045743 | Other | lineage3 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR5818685 | Sensitive | None | SRR5818660 | Sensitive | lineage4.1.1.3 | dj | SRR5818677 | Sensitive | lineage1.1.2 | dj | SRR5818684 | Other | lineage4.2.2.2 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044787 | Other | lineage4.4 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044946 | Other | lineage4.1.2.1 | gb | SRR6045178 | Other | lineage3 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6044978 | Sensitive | lineage4.1.1.3.1 | gb | SRR6046020 | Other | lineage3 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045986 | Other | lineage3 | None | SRR6045135 | Other | lineage3 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6045261 | Other | lineage1.1.2 | gb | SRR6045365 | Other | lineage3 | gb | SRR6045384 | Other | lineage4.1.2 | None | SRR6046217 | Other | lineage3 | gb | SRR6045248 | Other | lineage3.1.1 | None | SRR6045264 | Sensitive | lineage2.2.1 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6046064 | Other | lineage3 | gb | SRR6046343 | Other | lineage2.2.1 | None | SRR6046250 | Other | lineage4.9 | None | ERR2851359 | Other | lineage4.9 | None | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR4829207 | Other | lineage2.2.1 | None | ERR4829907 | HR-TB | lineage4.1.2.1 | it | SRR6046602 | HR-TB | lineage4.1.2.1 | gb | ERR4829333 | RR-TB | lineage4 | None | ERR4829360 | Sensitive | lineage4.7 | None | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | SRR6046433 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR6046484 | Other | lineage1.2.2.2 | None | ERR4829359 | Other | lineage4.7 | None | ERR4828977 | MDR-TB | lineage4.2.1 | it | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046641 | Other | lineage4.8 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046646 | Other | lineage4.7 | gb | SRR6046779 | Other | lineage4.1.2.1 | gb | SRR6046839 | Other | lineage4.9 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046860 | Other | lineage4.4.1.1 | None | SRR6152838 | Other | lineage2.2.1.1 | ca | SAMN02585928 | Other | lineage4.1.1.3 | za | SRR6398013 | Other | lineage4.1.2 | ca | SRR6397640 | Other | lineage4.2.1.1 | None | SRR6398010 | Sensitive | lineage4.2.1 | ca | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR3077969 | Other | La1.3 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6896198 | Other | lineage2.2 | None | ERR3276155 | Other | lineage4.1.2.1 | nl | SRR6785282 | Other | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6896444 | Other | lineage2.2.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR502525 | Sensitive | lineage6.2.1 | gh | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR502523 | Other | lineage6.3.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5087846 | Other | La1.8.1 | None | ERR3275190 | Other | lineage3 | nl | ERR5087596 | Other | La1.8.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR7131053 | Other | lineage2.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131054 | Sensitive | lineage4.1.2 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131104 | HR-TB | lineage4.3.4.2 | None | SRR7131114 | Other | lineage4.1.2 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131134 | Sensitive | lineage4.1.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131156 | Other | lineage4.6 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131288 | Other | lineage4.6.2.2 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR7535086 | Other | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645895 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645974 | Other | lineage4.3.4.1 | None | SRR7645929 | MDR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | SRR7646014 | MDR-TB | lineage4.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7755642 | MDR-TB | lineage4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7755652 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR9971113 | Other | lineage2.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9217359 | MDR-TB | lineage1.1.2 | None | SRR9971223 | Other | lineage2.2.1 | None | SRR7851312 | Other | La1.2 | None | DRR185000 | Other | lineage1.1.1.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR036207 | Other | lineage4.9 | None | ERR038289 | Other | lineage4.3.3 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10796556 | Other | lineage4.3.4.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796588 | Other | lineage4 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR10796627 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796622 | Other | lineage4.8 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796629 | Other | lineage4 | None | ERR10796634 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796635 | Other | lineage4 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR10796640 | Other | lineage4.1.2.1 | None | ERR117692 | Sensitive | lineage4.5 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283053 | Other | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR4011116 | Pre-XDR-TB | lineage2.2.2 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR400319 | Other | lineage4.8 | gb | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797068 | Other | La1.8.1 | None | ERR3957933 | Sensitive | lineage4.1.1.3 | None | ERR4769418 | Other | La1.2 | None | ERR4187652 | Other | lineage4.9 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4772215 | Other | La1.3 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR4811708 | HR-TB | lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR5865106 | MDR-TB | lineage4.2.1 | None | ERR5908124 | Other | lineage4.8 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR5987447 | MDR-TB | lineage2.2.1 | None | ERR6197022 | Other | lineage4.9 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6197032 | Other | lineage4.9 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR6197034 | Other | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR751345 | Other | lineage5.1.1 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117728 | Other | lineage3 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR1013531 | MDR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1013527 | RR-TB | lineage2.2 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR11349178 | MDR-TB | lineage4.4.1.1.1 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869285 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR11342699 | Sensitive | lineage4.4.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10869203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1173310 | MDR-TB | None | SRR1172213 | Sensitive | lineage4.9 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1184012 | Other | lineage4.1.1.3 | None | SRR1173740 | Other | None | SRR1175473 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181130 | Other | lineage4.1.1.3 | None | SRR1183034 | Sensitive | lineage4.9 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR12199457 | Sensitive | lineage4.9;lineage1.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13180301 | HR-TB | lineage3 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14801720 | RR-TB | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16058124 | Sensitive | lineage3 | None | SRR16149126 | MDR-TB | lineage4.2.2.1 | None | SRR16058726 | Other | lineage2.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR16370694 | Sensitive | lineage4.1.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR16278292 | Other | La1.4 | None | SRR16278274 | Other | La1.4 | None | SRR1792011 | Other | La1.8.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR1792024 | Other | La1.8.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR1792025 | Other | La1.8.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002986 | MDR-TB | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18002997 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18213684 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR19303805 | Other | lineage4.8 | None | SRR19233762 | Sensitive | lineage4.1.1 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303916 | Other | lineage4.1.2.1 | None | SRR19303876 | Other | lineage4.7 | None | SRR19303899 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | SRR2100254 | Sensitive | lineage4.5 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19304094 | Other | lineage6 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303985 | Other | lineage4.8 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304096 | Other | La1.2 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR21469200 | Other | La1.7.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR4815268 | Other | lineage4.8 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR5758348 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815104 | Other | lineage4.8 | None | ERR4815278 | Other | lineage4.8 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4814291 | Sensitive | lineage4.3.2 | gb | ERR4815281 | Other | lineage4.4.2 | None | ERR4814341 | Other | lineage4.7 | None | ERR4815310 | Other | None | SRR3105797 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814438 | HR-TB | lineage4.1.2.1 | gb | ERR4814496 | RR-TB | lineage4.1.2 | None | ERR4815680 | Other | lineage1.1.2 | gb | ERR1815538 | Other | La1.7.1 | None | ERR4815775 | Other | lineage4.3.4.2 | gb | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR1750882 | Sensitive | lineage4.1.1.3 | zw | ERR4814700 | Other | lineage4.3.3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4814671 | Other | lineage3 | gb | ERR4814709 | Other | lineage4.1.1 | None | ERR4814714 | Other | lineage3 | None | ERR1750873 | Sensitive | lineage4.8 | bw | ERR1750905 | Sensitive | lineage4.3.3 | za | ERR1750889 | Other | lineage4.4.1.1 | None | ERR4818401 | HR-TB | lineage2.2.1 | gb | ERR1750899 | Sensitive | lineage4.1.1.3 | zw | ERR1750907 | RR-TB | None | ERR1750906 | Sensitive | lineage4.3.3 | za | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR1750909 | RR-TB | lineage4.1.1.2 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR1750929 | Sensitive | lineage4.1.1.3 | za | ERR4815787 | Other | lineage2.2.1 | None | ERR1750931 | Sensitive | lineage4.1.2.1 | za | ERR4815502 | Other | lineage4.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4814843 | Other | lineage1.1.3 | None | SRR3675265 | Other | lineage4 | None | ERR4815738 | Other | lineage3 | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | ERR176605 | HR-TB | lineage4.3.4.2.1 | mw | ERR4815532 | Other | lineage3 | gb | ERR4814905 | Other | lineage4.8 | gb | ERR4815550 | Other | lineage4 | None | ERR4814911 | Other | lineage4.3.3 | None | SRR3675282 | Other | None | ERR4814954 | Other | lineage3.1 | gb | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR4815556 | RR-TB | lineage3 | None | ERR4815584 | Other | lineage4.3.4.2.1 | gb | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815036 | Sensitive | lineage4.8 | None | SRR3675453 | Sensitive | lineage4.8.2 | gb | ERR4815079 | RR-TB | lineage3 | None | ERR4815065 | Other | lineage4.1.2.1 | gb | ERR4815101 | Other | lineage3 | gb | ERR2446456 | HR-TB | lineage4.4.1.1 | None | ERR4816944 | RR-TB | lineage2.2 | None | ERR4815849 | Other | lineage3.1.1 | None | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | SRR3675509 | Other | lineage4.9 | None | ERR4816951 | HR-TB | lineage4.1.2.1 | gb | SRR3675513 | Other | lineage4.8 | None | ERR4815905 | Other | lineage1.2.2.2 | gb | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4815919 | Other | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None | ERR4816015 | HR-TB | lineage4.4.1.1 | None | ERR4816001 | Other | lineage3 | None | ERR4816009 | Other | lineage1.1.2 | None | ERR4816031 | Other | lineage4.3.3 | gb | ERR4816029 | Other | lineage2.2.1 | None | ERR4816249 | Other | lineage1.1.2 | gb | ERR2027220 | Other | lineage3.1.3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR4816186 | Sensitive | lineage3 | gb | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR4816231 | Other | lineage4 | None | ERR4816232 | Other | lineage4 | None | ERR2027247 | Sensitive | lineage4.4.1.1 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4816293 | Other | lineage4.1.2.1 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | SRR3675565 | Other | lineage3 | None | ERR4817069 | RR-TB | None | ERR2229760 | Other | lineage4.8 | dk | ERR4816417 | Other | lineage4.9 | None | ERR4817475 | Other | lineage4.1.1.3 | gb | ERR4817109 | Other | lineage3 | None | ERR4816441 | Sensitive | lineage3 | None | ERR4816464 | Other | lineage3 | None | ERR2446509 | Other | lineage3 | nl | ERR4816474 | Other | lineage4.9 | None | ERR4816562 | Other | lineage4 | None | ERR4816493 | Other | lineage4.1.2.1 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4816476 | Other | lineage3.1.2.1 | None | ERR4817135 | Other | lineage4.1.2.1 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816604 | RR-TB | lineage4.1.2 | None | ERR2229665 | Sensitive | lineage4.8 | dk | ERR4816571 | Other | lineage1.1.2 | None | ERR4816627 | Other | lineage2.2 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816691 | Other | lineage4.1.2.1 | gb | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816699 | Other | lineage4.6 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4817434 | Other | lineage3 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR4033490 | Other | lineage2.2.2 | za | SRR4033523 | Other | lineage2.2 | None | ERR4816907 | Other | lineage1.1.1 | None | ERR4817665 | Other | lineage4.8 | None | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4818988 | Other | lineage1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817672 | Other | lineage1.1.2 | None | ERR4818663 | Other | lineage3 | None | ERR4818691 | Other | lineage4.8 | None | ERR4817895 | Other | lineage4.1.2.1 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4818696 | Other | lineage4.8 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817907 | Other | lineage3 | gb | ERR2510768 | Other | lineage4.8 | it | ERR4817926 | HR-TB | lineage4.6.2.2 | gb | ERR4817943 | Other | lineage4.1.2.1 | gb | ERR4817948 | Other | lineage3 | gb | ERR4819007 | Other | lineage2.2.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4818753 | Other | lineage3 | gb | ERR4818752 | Other | lineage3 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR2510796 | HR-TB | lineage4.3.4.2 | it | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2510794 | Other | lineage4.3.4.2 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4818176 | Other | lineage4.1.2.1 | None | ERR2515055 | Other | lineage3 | None | ERR4818825 | HR-TB | lineage4.1.2.1 | None | ERR3276144 | Other | lineage3 | nl | ERR4818064 | Other | lineage4.8 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | ERR4818831 | Other | lineage3 | None | ERR2432997 | Other | lineage4.8 | None | ERR4818853 | Other | lineage4.1.2 | gb | ERR4818192 | Other | lineage4.1.2.1 | gb | ERR4818219 | Other | lineage4.3.2.1 | gb | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818190 | Other | lineage4.8 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4818296 | Other | lineage4.2.2 | None | ERR4818287 | Other | lineage4.5 | gb | ERR4818874 | Other | lineage4.1.2.1 | gb | ERR4818313 | Other | lineage2.2.1 | None | ERR4818890 | Other | lineage4.7 | None | ERR4818371 | Other | lineage4.3.4.1 | None | ERR4818892 | MDR-TB | lineage4.2.2.1 | None | ERR4818351 | Other | lineage1.1.3 | None | ERR4818918 | Other | lineage1.1.2 | gb | ERR2509885 | RR-TB | lineage3 | None | ERR4818432 | HR-TB | lineage4.5 | gb | ERR4818440 | Other | lineage6.3.1 | None | ERR2513273 | Other | lineage4.1.2.1 | None | ERR4818497 | HR-TB | lineage3 | gb | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4818509 | RR-TB | La1.2.BCG | gb | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR1873436 | Pre-XDR-TB | lineage2.2.2 | za | ERR2446397 | Sensitive | lineage4.3.3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4819046 | Other | lineage2.2.1 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007172 | Sensitive | lineage4.1.2.1 | None | ERR4817555 | RR-TB | lineage3 | None | ERR4818570 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818952 | Other | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2513728 | Other | lineage3 | gb | ERR4817619 | Other | lineage4.1.2.1 | gb | ERR4819093 | Other | lineage4.3.3 | None | SRR5152914 | MDR-TB | lineage2.2.1 | None | ERR4819166 | Other | lineage3 | gb | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4819196 | Other | lineage4.1.1 | gb | ERR4819198 | Other | lineage2.2.1 | None | ERR1873555 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820713 | HR-TB | lineage4.8 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR2513794 | Other | lineage4.8 | gb | ERR2513910 | Other | lineage3 | gb | ERR2513903 | Other | lineage4.4.1.1 | gb | ERR4819615 | Other | lineage4.3.4.2.1 | None | ERR4820729 | Other | lineage2.2.1 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819550 | Other | lineage3 | None | ERR4819567 | Other | lineage2.2.1 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4819385 | Other | lineage2.2.1 | gb | ERR2514173 | Other | lineage4.5 | gb | ERR4819491 | Other | lineage4.1.2.1 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4820369 | Other | lineage2.2.1 | None | ERR4819524 | Other | lineage3 | None | ERR4820367 | Sensitive | lineage3.1.1 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819575 | Sensitive | lineage4 | None | ERR2514389 | Other | lineage3 | None | ERR4820759 | Sensitive | lineage4.1.2.1 | gb | ERR4819766 | Other | lineage4.4.1.1 | None | ERR2514394 | Other | lineage4.3.4.2 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820769 | Other | lineage4.8 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR2514550 | MDR-TB | lineage3 | gb | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2514515 | Other | lineage4.2.1 | None | ERR4820478 | Other | lineage3.1.3 | None | ERR4819770 | Other | lineage4.8 | gb | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR2514613 | Other | lineage4.8 | gb | ERR4820492 | Other | lineage2.2.1 | None | ERR2514668 | Other | lineage4.8.1 | gb | ERR4820889 | Other | lineage3 | gb | ERR4819872 | HR-TB | lineage4.4.1.1 | None | ERR4819950 | RR-TB | lineage4.1.1.3 | gb | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4820558 | Other | lineage4.8 | gb | ERR1023509 | Other | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820012 | Other | lineage4.1.2.1 | None | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR2514943 | Other | lineage4.8 | gb | ERR4820829 | Other | lineage4.8 | None | ERR2515077 | Sensitive | lineage3 | gb | ERR4820028 | Other | lineage4.3.3 | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4820193 | Other | lineage3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820926 | Other | lineage4.8 | gb | ERR4820891 | Other | lineage4.9 | gb | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820188 | Other | lineage3 | gb | ERR4820907 | Other | lineage4.1.2.1 | gb | SRR6045420 | Other | lineage4.1.2.1 | gb | ERR4821030 | Other | lineage4.8 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR4821802 | Other | La3 | gb | ERR4821812 | Other | lineage4.8 | gb | ERR4821136 | Other | lineage4.2.1 | gb | ERR4821054 | Other | lineage3 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045544 | Other | lineage2.2.1 | gb | ERR4821139 | Other | lineage4.8 | gb | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821154 | Other | lineage2.2.1 | gb | ERR4821159 | MDR-TB | lineage4.2.2.1 | gb | ERR4821167 | Other | lineage4.8 | gb | ERR4821891 | Other | lineage4.8 | None | ERR4821264 | Other | lineage1.1.3 | None | ERR4821198 | Other | lineage3 | gb | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821371 | Other | lineage4.8 | gb | ERR4821288 | Other | lineage4.7 | None | ERR4821310 | Other | lineage5 | None | ERR4821286 | Other | lineage4.8 | None | ERR4822021 | Other | lineage4.8 | gb | ERR4821519 | Other | lineage3 | gb | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821373 | HR-TB | lineage4.1.2.1 | None | ERR4821492 | HR-TB | lineage3 | None | ERR4821584 | Other | lineage4.8.2 | None | ERR4821523 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4821550 | Other | lineage2.2.1 | None | ERR4822176 | Other | lineage4.1.1.2 | None | ERR4822190 | Other | lineage1.1.3.1 | gb | ERR4821572 | Other | lineage2.1 | None | ERR4821578 | Other | lineage4.1.2.1 | None | ERR4821719 | Other | lineage3 | gb | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821718 | Other | lineage4.2.2.2 | gb | ERR4821725 | Other | lineage4.8.2 | gb | ERR4821731 | Other | lineage3 | gb | SRR6045591 | Other | lineage4.1.2.1 | None | ERR4821746 | Other | lineage4.4.1.1 | gb | ERR4821722 | Other | lineage2.2.1 | None | ERR4821736 | HR-TB | lineage2.2.1 | gb | ERR4821761 | Other | lineage3 | gb | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR6045614 | Other | lineage4.8 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818440 | Other | lineage4.9 | None |
---|