TB-Profiler result

Run: ERR3283008
Summary

Run ID: ERR3283008

Sample name:

Date: 01-04-2023 01:17:12

Number of reads: 29155

Percentage reads mapped: 1.03

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.82 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.82 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 620245 c.355T>C synonymous_variant 1.0
ccsA 620249 p.Ser120Cys missense_variant 1.0
ccsA 620256 c.366C>G synonymous_variant 1.0
ccsA 620257 p.Ile123Leu missense_variant 1.0
ccsA 620269 p.Val127Ile missense_variant 1.0
ccsA 620275 c.385C>T synonymous_variant 1.0
ccsA 620283 c.393T>C synonymous_variant 1.0
ccsA 620284 p.Ala132Pro missense_variant 1.0
ccsA 620288 p.Arg133Gln missense_variant 1.0
ccsA 620295 c.405G>T synonymous_variant 1.0
ccsA 620367 c.477T>C synonymous_variant 1.0
rpoB 760181 c.375T>C synonymous_variant 1.0
rpoB 760184 c.378A>G synonymous_variant 1.0
rpoB 760196 c.390C>G synonymous_variant 1.0
rpoB 760223 c.417T>C synonymous_variant 1.0
rpoB 760235 c.429T>C synonymous_variant 1.0
rpoB 760283 c.477G>C synonymous_variant 1.0
rpoB 760307 c.501T>C synonymous_variant 1.0
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761261 c.1455G>T synonymous_variant 1.0
rpoB 761327 c.1521A>G synonymous_variant 1.0
rpoB 761360 c.1554T>C synonymous_variant 0.67
rpoB 761362 p.Ser519Thr missense_variant 0.67
rpoB 762008 c.2202C>G synonymous_variant 1.0
rpoB 762011 c.2205G>C synonymous_variant 0.67
rpoB 762017 c.2211A>G synonymous_variant 1.0
rpoB 762024 p.Val740Ile missense_variant 0.67
rpoB 762051 p.His749Tyr missense_variant 0.67
rpoB 762062 c.2256T>C synonymous_variant 1.0
rpoB 762065 c.2259T>C synonymous_variant 1.0
rpoB 762083 c.2277T>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762101 c.2295C>G synonymous_variant 0.4
rpoB 762114 p.Ile770Val missense_variant 0.8
rpoB 762122 c.2316C>T synonymous_variant 0.4
rpoB 762131 c.2325C>G synonymous_variant 0.5
rpoB 762140 c.2334G>C synonymous_variant 0.67
rpoB 762143 c.2337T>C synonymous_variant 0.67
rpoB 762149 c.2343G>C synonymous_variant 0.67
rpoB 762158 c.2352G>C synonymous_variant 0.5
rpoB 762170 c.2364C>G synonymous_variant 0.5
rpoB 762173 c.2367G>A synonymous_variant 0.5
rpoB 762176 c.2370T>C synonymous_variant 0.75
rpoB 762197 c.2391C>A synonymous_variant 0.5
rpoB 762233 c.2427G>C synonymous_variant 0.6
rpoB 762284 c.2478G>C synonymous_variant 0.5
rpoB 762293 c.2487T>C synonymous_variant 0.5
rpoC 762929 c.-441G>C upstream_gene_variant 0.75
rpoC 762938 c.-432G>C upstream_gene_variant 0.6
rpoC 762959 c.-411G>C upstream_gene_variant 0.33
rpoC 762962 c.-408C>T upstream_gene_variant 0.5
rpoC 762971 c.-399G>C upstream_gene_variant 0.4
rpoC 762989 c.-381G>C upstream_gene_variant 0.8
rpoC 762995 c.-375G>C upstream_gene_variant 0.75
rpoB 763002 c.3197dupA frameshift_variant 0.33
rpoB 763006 c.3201delC frameshift_variant 0.4
rpoB 763014 p.Met1070Leu missense_variant 0.43
rpoB 763017 p.Gln1071Glu missense_variant 0.43
rpoC 763028 c.-342T>C upstream_gene_variant 0.43
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.43
rpoC 763040 c.-330C>G upstream_gene_variant 0.83
rpoB 763046 p.Gln1080His missense_variant 0.33
rpoC 763049 c.-321G>A upstream_gene_variant 0.33
rpoB 763050 p.Leu1082Met missense_variant 0.4
rpoB 763053 p.Leu1083Met missense_variant 0.33
rpoB 763060 p.Ile1085Thr missense_variant 0.33
rpoC 763064 c.-306G>A upstream_gene_variant 0.29
rpoC 763070 c.-300T>C upstream_gene_variant 0.5
rpoC 763085 c.-285C>G upstream_gene_variant 0.67
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763465 c.96G>A synonymous_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763483 c.114G>C synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 764266 c.897T>C synonymous_variant 1.0
rpoC 764269 c.900G>C synonymous_variant 1.0
rpoC 764272 c.903G>C synonymous_variant 1.0
rpoC 764278 c.909A>G synonymous_variant 1.0
rpoC 764623 c.1254C>G synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764632 c.1263T>A synonymous_variant 1.0
rpoC 764644 c.1275G>C synonymous_variant 0.5
rpoC 764650 c.1281G>T synonymous_variant 0.75
rpoC 764653 c.1284G>C synonymous_variant 0.5
rpoC 764656 c.1287C>G synonymous_variant 0.5
rpoC 764672 p.Gln435Ser missense_variant 0.5
rpoC 764701 c.1332C>G synonymous_variant 0.6
rpoC 764706 p.Leu446Pro missense_variant 0.6
rpoC 764713 c.1344G>C synonymous_variant 0.5
rpoC 764716 c.1347G>C synonymous_variant 0.6
rpoC 764752 c.1383G>C synonymous_variant 0.67
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 767098 c.3729T>C synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpsL 781682 c.123T>G synonymous_variant 1.0
rpsL 781715 c.156T>C synonymous_variant 1.0
rpsL 781718 c.159C>G synonymous_variant 1.0
rpsL 781728 c.169T>C synonymous_variant 1.0
rpsL 781736 c.177T>C synonymous_variant 1.0
rplC 800612 c.-197A>G upstream_gene_variant 1.0
rplC 800618 c.-191T>C upstream_gene_variant 1.0
rplC 800844 c.36T>C synonymous_variant 1.0
rplC 800867 p.Ser20Asn missense_variant 1.0
rplC 800874 c.66A>G synonymous_variant 1.0
rplC 800889 c.81C>G synonymous_variant 1.0
rplC 800907 c.99C>G synonymous_variant 1.0
rplC 800916 c.108A>G synonymous_variant 1.0
rplC 800934 c.126C>G synonymous_variant 0.67
rplC 800937 c.129A>G synonymous_variant 1.0
rplC 800939 p.Arg44Gln missense_variant 0.67
rplC 800946 c.138T>C synonymous_variant 1.0
rplC 800949 c.141T>C synonymous_variant 1.0
rplC 800967 c.159C>G synonymous_variant 1.0
rplC 800970 c.162T>C synonymous_variant 1.0
fbiC 1304568 c.1638T>C synonymous_variant 1.0
fbiC 1304574 c.1644C>G synonymous_variant 1.0
fbiC 1304580 c.1650T>C synonymous_variant 1.0
fbiC 1304613 c.1683T>C synonymous_variant 1.0
rrs 1471878 n.33C>T non_coding_transcript_exon_variant 1.0
rrs 1472083 n.238G>T non_coding_transcript_exon_variant 0.75
rrs 1472096 n.251T>A non_coding_transcript_exon_variant 0.43
rrs 1472100 n.255T>C non_coding_transcript_exon_variant 0.56
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.78
rrs 1472118 n.273A>T non_coding_transcript_exon_variant 0.39
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.44
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.5
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.39
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 0.33
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.68
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.92
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.3
rrs 1472251 n.406G>C non_coding_transcript_exon_variant 0.93
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.4
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.53
rrs 1472279 n.434T>G non_coding_transcript_exon_variant 0.56
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472517 n.672T>C non_coding_transcript_exon_variant 0.76
rrs 1472524 n.679G>A non_coding_transcript_exon_variant 0.3
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.46
rrs 1472535 n.690C>T non_coding_transcript_exon_variant 0.28
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.97
rrs 1472545 n.700A>G non_coding_transcript_exon_variant 0.76
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.41
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.9
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.32
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.32
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.66
rrs 1472572 n.727T>C non_coding_transcript_exon_variant 0.37
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.41
rrs 1472574 n.729T>A non_coding_transcript_exon_variant 0.37
rrs 1472579 n.734G>A non_coding_transcript_exon_variant 0.36
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.53
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.62
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.43
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.45
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.42
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.32
rrs 1472659 n.814G>A non_coding_transcript_exon_variant 0.77
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.82
rrs 1472664 n.819A>G non_coding_transcript_exon_variant 0.64
rrs 1472666 n.821G>A non_coding_transcript_exon_variant 0.64
rrs 1472677 n.832C>G non_coding_transcript_exon_variant 0.74
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 1.0
rrs 1472694 n.849C>T non_coding_transcript_exon_variant 0.8
rrs 1472697 n.852T>G non_coding_transcript_exon_variant 0.97
rrs 1472707 n.862A>G non_coding_transcript_exon_variant 0.78
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.95
rrs 1472715 n.870C>T non_coding_transcript_exon_variant 0.78
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.79
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.25
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.85
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 1.0
rrs 1472838 n.993A>T non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 1.0
rrs 1472841 n.996G>C non_coding_transcript_exon_variant 1.0
rrs 1472845 n.1001delC non_coding_transcript_exon_variant 1.0
rrs 1472849 n.1004_1005insG non_coding_transcript_exon_variant 1.0
rrs 1472858 n.1013G>C non_coding_transcript_exon_variant 0.75
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.75
rrs 1472861 n.1016G>C non_coding_transcript_exon_variant 0.75
rrs 1472874 n.1029C>G non_coding_transcript_exon_variant 0.75
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.75
rrs 1472878 n.1033G>T non_coding_transcript_exon_variant 0.75
rrs 1472879 n.1034T>C non_coding_transcript_exon_variant 0.75
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.75
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.75
rrs 1472896 n.1051T>C non_coding_transcript_exon_variant 0.5
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.62
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.67
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.88
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.67
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.85
rrs 1472973 n.1128A>C non_coding_transcript_exon_variant 0.67
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.29
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.31
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.27
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.76
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.96
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.83
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.86
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.67
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.63
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.34
rrs 1473034 n.1189A>G non_coding_transcript_exon_variant 0.68
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.84
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.75
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.81
rrs 1473089 n.1244A>C non_coding_transcript_exon_variant 0.89
rrs 1473093 n.1248C>A non_coding_transcript_exon_variant 0.83
rrs 1473099 n.1254T>C non_coding_transcript_exon_variant 0.88
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.5
rrs 1473102 n.1257C>G non_coding_transcript_exon_variant 0.39
rrs 1473107 n.1262G>C non_coding_transcript_exon_variant 0.39
rrs 1473109 n.1264T>C non_coding_transcript_exon_variant 0.39
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.94
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.94
rrs 1473116 n.1271A>G non_coding_transcript_exon_variant 0.82
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.73
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.62
rrs 1473127 n.1282G>A non_coding_transcript_exon_variant 0.83
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.61
rrs 1473147 n.1302G>C non_coding_transcript_exon_variant 0.31
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.96
rrs 1473158 n.1313T>C non_coding_transcript_exon_variant 0.59
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.96
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.71
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.87
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.79
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.83
rrs 1473215 n.1370A>G non_coding_transcript_exon_variant 0.75
rrs 1473259 n.1414C>G non_coding_transcript_exon_variant 0.82
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.49
rrs 1473264 n.1419A>G non_coding_transcript_exon_variant 0.82
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.91
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.39
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.32
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 0.3
rrs 1473295 n.1450G>T non_coding_transcript_exon_variant 0.56
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.96
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.89
rrl 1473384 n.-274A>C upstream_gene_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.67
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 0.67
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.83
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.88
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474468 n.811G>A non_coding_transcript_exon_variant 0.9
rrl 1474476 n.819C>G non_coding_transcript_exon_variant 0.94
rrl 1474479 n.822A>C non_coding_transcript_exon_variant 0.94
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.94
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.94
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.94
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.89
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.89
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.89
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.89
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.89
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.89
rrl 1474555 n.898T>G non_coding_transcript_exon_variant 0.89
rrl 1474558 n.901G>C non_coding_transcript_exon_variant 0.88
rrl 1474581 n.924C>T non_coding_transcript_exon_variant 0.88
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 0.89
rrl 1474732 n.1075A>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.22
rrl 1474752 n.1096delA non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.67
rrl 1474766 n.1109A>G non_coding_transcript_exon_variant 0.75
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.86
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 1.0
rrl 1474783 n.1126G>T non_coding_transcript_exon_variant 1.0
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>G non_coding_transcript_exon_variant 0.62
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.31
rrl 1474826 n.1169T>C non_coding_transcript_exon_variant 0.27
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 1.0
rrl 1474852 n.1195T>C non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.68
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>T non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 1.0
rrl 1474945 n.1288C>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.8
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 1.0
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.78
rrl 1475696 n.2039T>G non_coding_transcript_exon_variant 0.92
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.33
rrl 1475703 n.2046A>C non_coding_transcript_exon_variant 0.85
rrl 1475706 n.2049A>C non_coding_transcript_exon_variant 0.93
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.77
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.93
rrl 1475735 n.2078T>C non_coding_transcript_exon_variant 0.86
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.95
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.86
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.94
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.91
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.93
rrl 1475791 n.2134A>G non_coding_transcript_exon_variant 0.88
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.95
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.97
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.33
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.95
rrl 1475897 n.2240T>G non_coding_transcript_exon_variant 0.97
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.95
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.95
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.97
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.97
rrl 1475938 n.2281C>A non_coding_transcript_exon_variant 0.9
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.89
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.89
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.83
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.86
rrl 1475977 n.2320A>C non_coding_transcript_exon_variant 0.82
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.4
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.4
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.6
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.75
rrl 1476187 n.2530T>C non_coding_transcript_exon_variant 0.5
rrl 1476189 n.2532C>G non_coding_transcript_exon_variant 0.6
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.83
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.33
rrl 1476197 n.2540T>C non_coding_transcript_exon_variant 0.33
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.67
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.83
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.33
rrl 1476209 n.2552A>G non_coding_transcript_exon_variant 0.33
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.33
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.33
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.5
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.5
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.4
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.44
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.33
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.5
rrl 1476252 n.2595T>A non_coding_transcript_exon_variant 0.6
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.25
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.38
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.88
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.57
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.29
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.5
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.6
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.33
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.33
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.6
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.71
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.89
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.89
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.57
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.47
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.46
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.28
rrl 1476357 n.2700T>A non_coding_transcript_exon_variant 0.51
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.63
rrl 1476359 n.2702C>T non_coding_transcript_exon_variant 0.55
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.38
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.48
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.66
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.41
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.49
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.3
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.45
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.57
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.28
rrl 1476443 n.2786G>C non_coding_transcript_exon_variant 0.48
rrl 1476455 n.2798C>G non_coding_transcript_exon_variant 0.5
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.3
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.52
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.87
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.75
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.3
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.64
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.36
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.79
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.31
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.88
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.85
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.36
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.75
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.42
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.92
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.27
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.55
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.58
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.91
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.71
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.33
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.38
rrl 1476595 n.2938C>A non_coding_transcript_exon_variant 0.5
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834213 c.672G>T synonymous_variant 0.67
rpsA 1834225 c.684C>G synonymous_variant 0.6
rpsA 1834231 c.690T>C synonymous_variant 0.4
rpsA 1834234 c.693G>T synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 0.8
rpsA 1834244 p.Val235Ile missense_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>T synonymous_variant 0.8
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834288 c.747C>T synonymous_variant 0.4
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Lys missense_variant 1.0
rpsA 1834303 c.762T>C synonymous_variant 0.8
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834309 c.768C>T synonymous_variant 0.4
rpsA 1834310 p.Glu257Lys missense_variant 1.0
rpsA 1834513 c.972C>G synonymous_variant 1.0
rpsA 1834528 c.987T>C synonymous_variant 1.0
rpsA 1834546 c.1005T>C synonymous_variant 1.0
ndh 2102212 c.831G>C synonymous_variant 1.0
ndh 2102221 c.822G>A synonymous_variant 1.0
ndh 2102230 c.813G>C synonymous_variant 1.0
ndh 2102247 p.Val266Ile missense_variant 1.0
ndh 2102269 c.774C>G synonymous_variant 0.67
ndh 2102317 c.726A>G synonymous_variant 1.0
ndh 2102344 c.699T>C synonymous_variant 1.0
kasA 2518657 c.543G>C synonymous_variant 1.0
kasA 2518672 c.558G>C synonymous_variant 1.0
kasA 2518678 c.564C>T synonymous_variant 0.67
kasA 2518684 c.570C>G synonymous_variant 0.67
kasA 2518693 c.579C>G synonymous_variant 0.67
kasA 2518696 c.582C>G synonymous_variant 0.67
kasA 2518702 c.588C>T synonymous_variant 0.67
kasA 2518705 c.591T>C synonymous_variant 0.67
kasA 2518711 c.597A>G synonymous_variant 0.67
kasA 2518714 c.600A>C synonymous_variant 0.67
kasA 2518732 c.618C>G synonymous_variant 0.67
thyX 3067802 c.144C>G synonymous_variant 1.0
rpoA 3877553 p.Glu319Gln missense_variant 1.0
rpoA 3877889 p.Ala207Ser missense_variant 1.0
rpoA 3877896 c.612G>C synonymous_variant 1.0
rpoA 3877900 p.Ser203Thr missense_variant 1.0
rpoA 3877905 c.603A>G synonymous_variant 1.0
rpoA 3877909 p.Asn200Ser missense_variant 1.0
rpoA 3877950 c.558C>T synonymous_variant 0.67
rpoA 3877962 c.546G>T synonymous_variant 1.0
rpoA 3877989 c.519A>G synonymous_variant 1.0
rpoA 3878001 c.507A>C synonymous_variant 1.0
rpoA 3878022 c.486T>C synonymous_variant 1.0
rpoA 3878028 c.480G>C synonymous_variant 1.0
clpC1 4038755 c.1950G>C synonymous_variant 1.0
clpC1 4038773 c.1932T>C synonymous_variant 0.67
clpC1 4038794 p.Ser637Thr missense_variant 0.5
clpC1 4038801 p.Tyr635Phe missense_variant 0.5
clpC1 4038806 p.Glu633Asp missense_variant 0.5
clpC1 4038810 p.Gln632Pro missense_variant 0.5
clpC1 4038812 c.1893T>C synonymous_variant 0.5
clpC1 4038815 c.1890G>A synonymous_variant 1.0
clpC1 4038821 c.1884G>A synonymous_variant 0.5
clpC1 4038845 c.1860G>C synonymous_variant 0.67
clpC1 4038869 c.1836G>A synonymous_variant 0.67
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4039391 c.1314T>G synonymous_variant 1.0
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.67
clpC1 4039931 c.774T>C synonymous_variant 1.0
clpC1 4039934 c.771G>C synonymous_variant 0.67
clpC1 4039937 c.768G>C synonymous_variant 0.67
clpC1 4039946 c.759A>C synonymous_variant 1.0
clpC1 4039952 c.753T>C synonymous_variant 0.67
clpC1 4039979 c.726C>G synonymous_variant 0.67
clpC1 4039988 c.717C>G synonymous_variant 1.0
clpC1 4039991 c.714G>C synonymous_variant 0.67
clpC1 4040021 c.684A>C synonymous_variant 1.0
clpC1 4040024 c.681A>G synonymous_variant 1.0
clpC1 4040033 c.672G>C synonymous_variant 0.67
clpC1 4040036 c.669C>G synonymous_variant 0.67