EBG00000313339 - n.2099T>C


Drug resistance types
32 Sensitive 63 RR-TB 31 HR-TB 32 MDR-TB 11 Pre-XDR-TB 0 XDR-TB 274 Other
lineage Counts
lineage Count
lineage4.1.1 7
lineage4.8 32
lineage4.4.1.1 18
lineage4.6.2.2 10
lineage4.3.2.1 5
lineage4.3.3 15
lineage4.4.1.1.1 2
lineage4.9 40
lineage2.2.1 38
lineage3 43
lineage2.2.2 4
lineage4.5 5
lineage4.2.2 3
lineage2.2.1.1 3
lineage4.1.2.1 44
lineage4.1.1.3 6
lineage4.4.1.2 1
lineage4.3.2 4
lineage1.2.2.2 5
lineage1.1.2 12
lineage4.4.2 3
lineage1.2.2 1
lineage4 16
lineage4.7 1
lineage3.1.1 9
lineage3.1.2 6
lineage4.1 6
lineage4.1.3 2
lineage4.9;lineage3.1.1 1
lineage1.2.1.1 2
lineage4.3.4.2 4
15
lineage4.8.2 4
lineage4.6 5
lineage5 2
lineage4.2.2.2 6
lineage1.1.3 3
lineage4.8;lineage4.2.1.1 1
lineage3.1 2
lineage4.1.2 4
lineage1.1.1 1
lineage1 2
lineage3.1.2.1 1
lineage6.3.1 1
lineage4;lineage3 1
lineage4.3.4.1 7
lineage4.2.2.1 1
lineage4.1.1.3.1 2
lineage1.2.1.2.1 3
lineage4.3.4.2.1 3
lineage4.2.1 1
lineage1.1.3.1 4
lineage4.6.1.2 1
lineage4.3.1.1 3
lineage2.1 1
La1.6 1
lineage3.1.3 1
lineage3.1.2.2 2
lineage1.1.3.3 1
lineage4.3.1 1
lineage1.1.1.1 2
lineage4.6.5 1
lineage5.1.1 1
lineage2.2 2
lineage4.9;lineage4.3.4 1
lineage4.3 2
lineage4.3.4 2
lineage6 2
La1.3 1
lineage4.4 1
spoligotype Counts
spoligotype Count
None 443
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR11342643 MDR-TB lineage4.1.1 None
SRR11342634 MDR-TB lineage4.8 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR11342677 HR-TB lineage4.6.2.2 None
SRR11349172 RR-TB lineage4.3.2.1 None
SRR11349153 RR-TB lineage4.1.1 None
SRR11349166 Pre-XDR-TB lineage4.3.3 None
SRR11349178 MDR-TB lineage4.4.1.1.1 None
SRR1181161 Other lineage4.9 None
SRR11349184 MDR-TB lineage2.2.1 None
SRR1180252 Other lineage4.9 None
SRR1172816 MDR-TB lineage4.3.3 None
SRR1180440 Other lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1181250 Other lineage4.9 None
SRR1183080 RR-TB lineage4.9 None
SRR15276982 Pre-XDR-TB lineage3 None
SRR14179705 Pre-XDR-TB lineage3 None
SRR14801652 MDR-TB lineage4.3.3 None
SRR18002872 Pre-XDR-TB lineage2.2.1 None
SRR16157123 Other lineage4.9 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002908 Other lineage2.2.1 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002888 RR-TB lineage2.2.1 None
SRR18002899 RR-TB lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18002926 Other lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002956 HR-TB lineage2.2.1 None
SRR18002954 Other lineage2.2.1 None
SRR18003007 MDR-TB lineage4.5 None
SRR18002976 Other lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18002985 HR-TB lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18213726 Other lineage3 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR19303796 Other lineage4.3.3 None
SRR18213736 MDR-TB lineage3 None
SRR18909918 Other lineage2.2.1.1 None
SRR19241806 Sensitive lineage4.1.2.1 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR19304109 Other lineage4.8 None
SRR19303815 Other lineage4.8 None
SRR19303820 RR-TB lineage4.8 None
SRR19304057 Sensitive lineage4.4.1.2 None
SRR19303907 Other lineage4.8 None
SRR19304115 Other lineage4.1.2.1 None
SRR19325518 MDR-TB lineage2.2.1 None
ERR4815121 HR-TB lineage4.6.2.2 None
SRR19325559 Sensitive lineage4.3.2 None
SRR21677886 Sensitive lineage4.9 None
SRR22048536 Other lineage4.3.3 None
ERR4815104 Other lineage4.8 None
ERR4815172 Other lineage1.2.2.2 None
ERR4815171 HR-TB lineage1.1.2 None
ERR4815193 MDR-TB lineage4.8 None
ERR4815281 Other lineage4.4.2 None
ERR4815225 RR-TB lineage1.2.2 None
ERR4815268 Other lineage4.8 None
SRR3675475 Other lineage4.1.1.3 None
SRR6046668 Sensitive lineage1.1.2 gb
ERR4814312 Other lineage4 None
ERR4815301 Other lineage4.4.2 None
ERR4814341 Other lineage4.7 None
ERR4815334 Other lineage3.1.1 None
ERR4814362 Other lineage4.8 None
SRR6046064 Other lineage3 gb
ERR4814356 Pre-XDR-TB lineage3.1.2 None
ERR4814415 Other lineage3.1.1 None
ERR4815777 Other lineage4.9 None
ERR4814681 Other lineage2.2.1 None
ERR4814554 Other lineage4.1 None
ERR4815780 MDR-TB lineage4.1.3 None
ERR171142 Other lineage4.9;lineage3.1.1 None
ERR4814714 Other lineage3 None
ERR4814709 Other lineage4.1.1 None
SRR3675227 Other lineage4.9 None
ERR4815467 Other lineage3 None
ERR4814821 Other lineage2.2.1 None
ERR4819579 HR-TB lineage4.3.3 None
ERR4814911 Other lineage4.3.3 None
SRR3675261 Other lineage1.2.1.1 None
ERR4814841 Other lineage4.1 None
ERR4814896 Other lineage2.2.1.1 None
ERR4814874 MDR-TB lineage1.1.2 None
ERR4814986 Other lineage4.3.4.2 None
ERR4814930 Other lineage4.4.1.1 None
ERR4815080 Other lineage4.1.2.1 None
SAMEA3501073 RR-TB lineage4.8 None
ERR4815572 Other lineage4.1.2.1 None
ERR4815883 Sensitive lineage4.1.2.1 None
SRR3675509 Other lineage4.9 None
SRR3675456 HR-TB None
ERR4815836 Other lineage4.8.2 None
SRR3675511 Sensitive lineage4.6 None
ERR4815898 Other lineage3 None
ERR4815944 HR-TB lineage4.1.2.1 None
ERR4816967 RR-TB lineage5 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR2027250 Other lineage3.1.2 None
SRR3675538 Other lineage4.8 None
ERR4817464 Other lineage3.1.1 None
ERR4815956 Other lineage1.1.2 None
ERR4816009 Other lineage1.1.2 None
SRR3675527 RR-TB lineage4.9 None
ERR2027232 Other lineage4.3.4.2 None
ERR4816086 Other lineage4.2.2.2 None
ERR4816101 Other lineage4.1.2.1 None
ERR4816093 Other lineage1.1.3 None
ERR2027252 Other lineage4.8;lineage4.2.1.1 None
ERR2027230 Other lineage4.2.2.2 None
ERR2027277 Other lineage4.8 None
ERR2027257 Other lineage4.1.2.1 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR4817349 Other lineage4.9 None
ERR2027290 RR-TB lineage3.1 None
ERR2027284 HR-TB lineage4.6.2.2 None
ERR4816283 Other lineage4.1.2.1 None
ERR4816227 RR-TB lineage3 None
ERR4816232 Other lineage4 None
ERR4817055 Other lineage4.1.2.1 None
ERR212034 HR-TB None
SRR3675552 RR-TB lineage4.9 None
ERR4816231 Other lineage4 None
SRR3675555 HR-TB None
ERR4816270 Other lineage4.1.2.1 None
ERR4817060 RR-TB None
ERR4816397 Other lineage1.1.2 None
ERR4816423 Other lineage3.1.2 None
ERR4816549 Other lineage2.2.1 None
ERR4816458 Other lineage1.2.2.2 None
ERR4816462 Other lineage4.1.2.1 None
ERR2229233 Sensitive lineage4 None
ERR2229234 RR-TB lineage4.8 None
ERR4816531 Other lineage4.1.2 None
ERR4816692 Other lineage4.1.2.1 None
ERR4816610 RR-TB lineage4.3.3 None
ERR4816649 Other lineage3 None
ERR4817665 Other lineage4.8 None
ERR4816696 Other lineage3 None
ERR4816699 Other lineage4.6 None
ERR4816856 Other lineage4.1.2.1 None
ERR4816866 Other lineage2.2.1 None
SRR4033549 HR-TB lineage2.2.2 None
ERR4816756 RR-TB None
ERR4817241 Sensitive lineage3 None
ERR4816804 Other lineage4.1 None
ERR4816831 Other lineage4.1.2.1 None
ERR4816883 Other lineage4.5 None
ERR2512986 Other lineage3 None
ERR4817703 Other lineage1.1.1 None
ERR4818655 Other lineage4.3.3 None
ERR4818988 Other lineage1 None
ERR4817826 RR-TB lineage4.5 None
ERR4819002 HR-TB lineage4.8 None
ERR4817874 Other lineage3 None
ERR2513401 HR-TB lineage3 None
ERR2513413 Other lineage3.1.2.1 None
ERR4818116 Other lineage4.3.4.2 None
ERR4818797 Other lineage4.5 None
ERR2515055 Other lineage3 None
ERR4818050 Other lineage4.6.2.2 None
ERR4818126 RR-TB lineage1 None
ERR4818128 RR-TB lineage4.1.2.1 None
ERR3275615 Sensitive lineage4.4.1.1 nl
ERR4818190 Other lineage4.8 None
ERR4818834 Other lineage4.1.2.1 None
ERR4818851 RR-TB lineage4.4.1.1 None
ERR4818351 Other lineage1.1.3 None
ERR2513223 Other lineage4.1.2.1 None
ERR4818407 Other lineage4.3.2 None
ERR4818393 RR-TB lineage3 None
ERR4818522 Pre-XDR-TB lineage3 None
ERR4818507 RR-TB lineage4.1.2.1 None
ERR3276170 Other lineage4.1.2.1 nl
ERR4818440 Other lineage6.3.1 None
SRR5007168 RR-TB lineage4.9 None
ERR4818556 Other lineage3 None
SRR5007163 MDR-TB lineage4;lineage3 None
SRR5007169 RR-TB lineage4.8.2 None
SRR5007170 RR-TB lineage4.9 None
ERR4817584 MDR-TB lineage3 None
ERR4817569 Other lineage4.3.4.1 None
ERR4817547 Other lineage4.2.2.1 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
ERR4818977 RR-TB lineage4.1.2.1 None
ERR4817645 Other lineage4.8 None
ERR4818964 Other lineage1.2.1.2.1 None
ERR4820266 RR-TB lineage3 None
ERR4820256 Other lineage2.2.1 None
ERR2512941 Other lineage1.1.2 None
ERR4819096 Other lineage4.4.1.1 None
ERR4819140 Other lineage4.1.2.1 None
ERR4819198 Other lineage2.2.1 None
ERR4820284 Other lineage4.9 None
ERR2513830 RR-TB lineage4.8 None
ERR4819242 HR-TB lineage4.6.2.2 None
ERR4820318 Other lineage4.2.2 None
ERR4819329 Sensitive lineage4.6.2.2 None
ERR4820742 Other lineage4.3.4.2.1 None
ERR2514073 Other lineage4.1.1.3.1 None
ERR4819423 Other lineage4.6.2.2 None
ERR4820324 Other lineage4 None
ERR4819528 RR-TB lineage3 None
ERR4820369 Other lineage2.2.1 None
ERR4819491 Other lineage4.1.2.1 None
ERR4819515 HR-TB lineage4.2.1 None
ERR4819555 Other lineage4.8 None
ERR4820746 RR-TB lineage3 None
ERR4819636 Other lineage3.1.2 None
ERR4819622 Other lineage4.1.2.1 None
ERR4820397 Other lineage4.9 None
ERR4820408 Other lineage4.1.2.1 None
ERR4819640 RR-TB lineage4.6.2.2 None
ERR4819772 RR-TB lineage1.1.3.1 None
ERR4820777 Other lineage4.1.2.1 None
ERR4819706 MDR-TB lineage4.3.4.2 None
SRR6398013 Sensitive lineage4.1.2 ca
ERR2514552 Sensitive lineage3 None
ERR4819766 Other lineage4.4.1.1 None
ERR4819765 Other lineage4.1 None
ERR4819784 Other lineage4.1.2.1 None
ERR4819787 Other lineage4.1.2.1 None
ERR2514645 Other lineage4.3.4.1 None
ERR4819948 Other lineage4.4.1.1 None
ERR4819830 Other lineage2.2.1 None
ERR2514692 Other None
ERR4819864 RR-TB lineage1.1.3.1 None
ERR4819876 HR-TB lineage4.3.4.2.1 None
ERR4819955 Other lineage3 None
ERR4820572 Other lineage1.2.1.2.1 None
ERR4820829 Other lineage4.8 None
ERR4819967 Other lineage4.3.3 None
ERR2515007 Other lineage3 None
ERR2515032 Other lineage3 None
ERR4820026 Other lineage3 None
ERR4820075 Other lineage4.1.2.1 None
ERR4820833 HR-TB None
ERR4820059 Other lineage3 None
ERR4820107 RR-TB None
ERR4820649 Other lineage4.6.1.2 None
SRR6045424 Other lineage1.1.2 None
ERR4820679 Other lineage4.8 None
ERR4820959 Other lineage4.1.2.1 None
SRR3675291 Sensitive lineage4.6 gb
ERR4821796 Other lineage4.1.1 None
ERR2446154 Sensitive lineage4.4.1.1 nl
ERR4821051 Other lineage1.2.1.2.1 None
SRR6045445 Other lineage4.3.1.1 None
ERR4821007 RR-TB lineage1.2.2.2 None
SRR6045485 Other lineage4.9 None
SRR6046096 Other lineage4.1.2.1 None
ERR4821214 RR-TB None
ERR4821119 Other lineage4.4.1.1 None
SRR6045516 Other lineage3.1.1 None
SRR6046117 RR-TB lineage4.9 None
ERR4821891 Other lineage4.8 None
SRR6045537 Pre-XDR-TB lineage2.2.1 None
SRR6045553 RR-TB lineage4.9 None
ERR4821899 Other lineage4.1 None
ERR4821222 Other lineage4.3.2.1 None
ERR4821334 RR-TB lineage4.1.3 None
ERR4821264 Other lineage1.1.3 None
ERR4821981 Other lineage4.1.2.1 None
ERR4821325 Other lineage3 None
ERR4821245 Other lineage4.1.2.1 None
ERR4821310 Other lineage5 None
ERR4822033 Other lineage3 None
ERR4821341 Other lineage4.3.4.1 None
ERR4821409 Other lineage4.8 None
ERR4821417 Other lineage1.1.3.1 None
ERR4822076 Other lineage4.1.2.1 None
ERR4822170 Other lineage4.1.1.3 None
ERR4822105 Other lineage4.1 None
ERR4822114 Other lineage4.1.2.1 None
ERR4822104 RR-TB lineage3 None
ERR4821572 Other lineage2.1 None
ERR4821610 Other lineage4.3.2 None
SRR6045565 Other lineage4.6.2.2 None
ERR4821773 Other La1.6 None
ERR2693227 Other lineage4.9 None
ERR4821679 Other lineage4.3.3 None
ERR4821704 MDR-TB lineage4.3.3 None
SRR6045599 Other lineage4.8 None
SRR6045613 Other lineage3.1.3 None
SRR6045591 Other lineage4.1.2.1 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045683 Other lineage3.1.2 None
SRR6045743 Other lineage3 None
SRR5818572 Sensitive lineage4.2.2.2 None
SRR6046152 Other lineage4.9 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR6045778 Other lineage3.1 None
SRR6045805 Other lineage4.3.1.1 None
SRR5818612 Other lineage4.2.2.2 None
SRR6045894 Other lineage4.8 None
SRR5818669 Sensitive lineage1.2.2.2 None
SRR6045843 Other lineage4.2.2.2 None
SRR6044841 Other lineage4.9 None
SRR6045944 Other lineage4.1.2.1 None
SRR6044936 Other lineage4 None
SRR6044958 Other lineage4.4.1.1 None
SRR6045017 Other lineage3.1.2.2 None
SRR6044983 Other lineage3.1.1 None
SRR6045071 Other lineage4.3.1.1 None
SRR6045321 Other lineage1.1.3.1 None
SRR6045159 Other lineage3.1.1 None
SRR6046020 Other lineage3 None
SRR6046159 Other lineage4.8.2 None
SRR6045986 Other lineage3 None
SRR6045125 Other lineage1.1.2 None
SRR6045267 RR-TB lineage4 None
SRR6045312 Other lineage1.1.3.3 None
SRR6046246 Other lineage3 None
SRR6045335 Other lineage4.1.2.1 None
SRR6046343 Other lineage2.2.1 None
SRR6046275 Other lineage3.1.1 None
SRR6046273 Other lineage3.1.2 None
SRR6046291 Other lineage3 None
ERR4830549 MDR-TB lineage4.1.1.3 None
ERR4829039 RR-TB lineage4.3.1 None
ERR4829816 RR-TB lineage4.4.1.1 None
ERR4829208 RR-TB lineage4.8 None
SRR6046521 Other lineage4.4.1.1 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046463 Other lineage4.4.1.1 None
SRR6046729 Other None
SRR6046534 Other lineage1.1.2 None
SRR6046641 Other lineage4.8 None
SRR6046612 Other lineage1.1.1.1 None
SRR6046815 Other lineage3 None
SRR6046737 Other lineage4.9 None
SRR6046733 Pre-XDR-TB lineage2.2.1 None
SRR6046766 Other lineage3.1.1 None
ERR2886463 Sensitive lineage2.2.1 None
SRR6046852 MDR-TB lineage3 None
SRR6367397 Other lineage4.1.2.1 None
SRR6046848 Other lineage4.6.5 None
ERR4817526 Other lineage4.4.1.1 gb
SRR9971229 RR-TB lineage4.3.2.1 None
ERR502517 MDR-TB lineage5.1.1 None
SRR7131004 Other lineage4.6.2.2 None
SRR7131123 Other lineage4.8 None
SRR9971246 MDR-TB lineage4.1.1.3 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7131152 MDR-TB lineage2.2.1 None
SRR9971382 Sensitive lineage4.4.1.1 None
SRR9970980 Other lineage4.1.2 None
SRR9971372 MDR-TB lineage4.1.1 None
SRR7585400 MDR-TB lineage3 None
ERR4818180 Other lineage4.8 gb
SRR9971065 RR-TB lineage2.2.1 None
SRR9971046 MDR-TB lineage4.8 None
SRR9971114 Other lineage2.2.1 None
SRR8651633 Pre-XDR-TB lineage4.4.2 None
SRR9971113 Other lineage2.2.1 None
SRR9971112 Other lineage2.2.1 None
ERR10796558 Sensitive lineage4 None
SRR9971144 RR-TB lineage2.2.1 None
DRR188816 Sensitive lineage4.2.2 None
ERR1063839 HR-TB lineage2.2 None
ERR1063857 HR-TB None
ERR10796555 Other lineage4.1.2.1 None
DRR185000 Other lineage1.1.1.1 None
ERR10796564 Other lineage4.3.3 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796563 Other lineage4.3.3 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796566 Other lineage4.9;lineage4.3.4 None
ERR10796577 RR-TB lineage4.9 None
ERR10796576 RR-TB lineage4.9 None
ERR10796575 RR-TB lineage4.9 None
ERR10796582 HR-TB lineage4.3 None
ERR10796578 Other lineage2.2.1 None
ERR10796580 RR-TB lineage4.6 None
ERR10796595 Other lineage4.9 None
ERR10796586 Other lineage4.9 None
ERR10796593 RR-TB lineage4 None
ERR10796617 Other lineage4.3.4.1 None
ERR10796598 RR-TB lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR10796599 Other lineage4 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796615 Other lineage4 None
ERR10796620 Other lineage4.1.1 None
ERR10796627 Other lineage4 None
ERR10796623 Other lineage4.1.1 None
ERR10796635 Other lineage4 None
ERR10796628 Other lineage4.3.3 None
ERR10796629 Other lineage4 None
ERR10796633 RR-TB lineage4.3.4 None
ERR10796631 Other lineage4.3.4 None
ERR4820736 Sensitive lineage4.1.2.1 gb
ERR10796640 Other lineage4.1.2.1 None
ERR3283051 Other lineage4.9 None
ERR3283008 Other lineage4.9 None
ERR3283043 Other lineage4.9 None
ERR4820922 Other lineage4.1.2.1 gb
ERR3283025 HR-TB None
ERR3806588 Other lineage6 None
ERR3797086 Other lineage4.9 None
ERR3283053 Other lineage4.9 None
ERR387051 HR-TB None
ERR4769518 Sensitive lineage4.9 None
ERR4769506 Sensitive La1.3 None
ERR4195243 Sensitive lineage4 None
ERR2514173 Other lineage4.5 gb
ERR4769521 HR-TB None
ERR6197034 Other lineage4.9 None
ERR2514351 Sensitive lineage3 gb
ERR4810624 HR-TB lineage2.2 None
ERR6197024 RR-TB lineage4.9 None
ERR6866807 HR-TB lineage4 None
ERR9117699 Other lineage4.1.2.1 None
ERR9117675 Other lineage4.8 None
ERR9117706 Other lineage4.4 None
ERR9117704 Other lineage4.6 None
ERR9117732 Other lineage1.2.2.2 None
ERR9117711 Other lineage4.3.4.2.1 None
ERR9117740 Other lineage3.1.1 None
ERR9117760 HR-TB lineage4.3 None
ERR9117806 Other lineage4.8 None
ERR9117763 HR-TB lineage3 None
ERR9117788 Other lineage3 None
ERR9117818 Sensitive lineage1.1.2 None
ERR9117805 Other lineage4.3.2 None
ERR9117813 Sensitive lineage1.1.2 None
ERR9119669 HR-TB None
ERR9117841 Other lineage4.8.2 None
SRR10315567 Other lineage2.2.1 None
ERR9896153 RR-TB lineage4.4.1.1 None
ERR9787030 Sensitive lineage6 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR10315556 Sensitive lineage2.2.1 None
SRR10315693 RR-TB lineage4.1.2 None
SRR10315579 Other lineage2.2.1.1 None
SRR10315696 Sensitive lineage4.3.2.1 None
SRR10315707 MDR-TB lineage4.4.1.1.1 None