TB-Profiler result

Run: SRR3675509
Summary

Run ID: SRR3675509

Sample name:

Date: 04-04-2023 05:31:08

Number of reads: 20273

Percentage reads mapped: 4.26

Strain: lineage4.9

Drug-resistance: Other

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472035 n.190G>A non_coding_transcript_exon_variant 1.0 streptomycin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 1.0 streptomycin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.42 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.34 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.59 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.52 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761753 c.1947C>G synonymous_variant 1.0
rpoB 761765 c.1959T>C synonymous_variant 1.0
rpoB 761768 c.1962G>C synonymous_variant 1.0
rpoB 761778 p.Asn658Ala missense_variant 1.0
rpoB 761792 c.1986T>C synonymous_variant 1.0
rpoB 761813 c.2007T>C synonymous_variant 1.0
rpoB 761819 c.2013G>C synonymous_variant 1.0
rpoB 761864 c.2058G>C synonymous_variant 1.0
rpoB 761873 c.2067A>G synonymous_variant 1.0
rpoB 761876 c.2070C>G synonymous_variant 1.0
rpoB 761879 c.2073G>A synonymous_variant 1.0
rpoB 762872 p.Met1022Ile missense_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762887 c.-483G>C upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762947 c.-423C>G upstream_gene_variant 1.0
rpoC 762971 c.-399G>C upstream_gene_variant 1.0
rpoC 762980 c.-390T>C upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 1.0
rpoB 763017 p.Gln1071Glu missense_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 1.0
rpoC 763043 c.-327G>C upstream_gene_variant 1.0
rpoC 763053 c.-317T>C upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoC 764407 p.Arg346Ser missense_variant 1.0
rpoC 764551 c.1182G>C synonymous_variant 1.0
rpoC 764566 c.1197C>G synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764611 c.1242G>C synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpoC 764875 c.1506C>G synonymous_variant 1.0
rpoC 764878 c.1509C>T synonymous_variant 1.0
rpoC 764888 c.1519T>C synonymous_variant 1.0
rpoC 764893 c.1524T>C synonymous_variant 1.0
rpoC 764911 c.1542A>G synonymous_variant 1.0
rpoC 765734 c.2365T>C synonymous_variant 1.0
rpoC 765751 c.2382C>G synonymous_variant 1.0
rpoC 765752 p.Asp795Ser missense_variant 1.0
rpoC 765772 c.2403C>G synonymous_variant 1.0
rpoC 765778 c.2409C>G synonymous_variant 1.0
rpoC 765781 p.Asp804Glu missense_variant 1.0
rpoC 765784 c.2415C>G synonymous_variant 1.0
rpoC 765793 c.2424C>G synonymous_variant 1.0
rpoC 765796 c.2427C>T synonymous_variant 1.0
rpoC 765805 c.2436C>T synonymous_variant 1.0
rpoC 765811 c.2442T>C synonymous_variant 1.0
rpoC 765814 c.2445A>G synonymous_variant 1.0
rpoC 765826 c.2457T>C synonymous_variant 1.0
rpoC 765850 c.2481G>C synonymous_variant 1.0
rpoC 765865 c.2496C>T synonymous_variant 1.0
rpoC 765871 c.2502T>C synonymous_variant 1.0
rpoC 765875 p.Val836Ile missense_variant 1.0
rpoC 765883 c.2514C>G synonymous_variant 1.0
rpoC 765928 c.2559C>G synonymous_variant 1.0
rpoC 765934 c.2565C>T synonymous_variant 1.0
rpoC 765946 c.2577C>T synonymous_variant 1.0
rpoC 765947 c.2578T>C synonymous_variant 1.0
rpoC 765958 c.2589C>G synonymous_variant 1.0
rpoC 765961 c.2592G>A synonymous_variant 1.0
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 1.0
rpoC 765967 c.2598C>T synonymous_variant 1.0
rpoC 765982 c.2613C>T synonymous_variant 1.0
rpoC 765994 c.2625A>T synonymous_variant 1.0
rpoC 766003 c.2634G>C synonymous_variant 1.0
rpoC 766618 c.3249G>T synonymous_variant 1.0
rpoC 766624 c.3255G>T synonymous_variant 1.0
rpoC 766645 c.3276A>G synonymous_variant 1.0
rpoC 766651 c.3282T>C synonymous_variant 1.0
rpoC 766657 c.3288A>G synonymous_variant 1.0
rpoC 766667 p.Ser1100Ala missense_variant 1.0
rpoC 766672 c.3303T>C synonymous_variant 1.0
rpoC 766726 c.3357T>C synonymous_variant 1.0
rpsL 781742 c.183C>T synonymous_variant 1.0
rpsL 781751 c.192G>C synonymous_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 1.0
rpsL 781763 c.204C>G synonymous_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 1.0
rpsL 781778 c.219C>T synonymous_variant 1.0
rpsL 781808 c.249C>T synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781877 c.318T>C synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rpsL 781904 c.345C>T synonymous_variant 1.0
rpsL 781907 c.348T>C synonymous_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 1.0
rrs 1471984 n.139T>A non_coding_transcript_exon_variant 1.0
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 1.0
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 1.0
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 1.0
rrs 1472034 n.189T>C non_coding_transcript_exon_variant 1.0
rrs 1472042 n.197T>C non_coding_transcript_exon_variant 1.0
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.75
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.34
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.35
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.53
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.55
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.56
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.82
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.47
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.34
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.39
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.43
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.73
rrs 1472300 n.455C>T non_coding_transcript_exon_variant 1.0
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.45
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.71
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.6
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.6
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.6
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.6
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.56
rrs 1472436 n.591G>T non_coding_transcript_exon_variant 0.56
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.44
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.56
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.33
rrs 1472462 n.617T>G non_coding_transcript_exon_variant 0.56
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.56
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.56
rrs 1472474 n.629C>G non_coding_transcript_exon_variant 0.5
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.5
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.46
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.78
rrs 1472496 n.651T>A non_coding_transcript_exon_variant 0.72
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.83
rrs 1472513 n.668T>C non_coding_transcript_exon_variant 0.38
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.53
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.51
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.97
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.43
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.32
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.32
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.45
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.87
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.31
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.6
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.31
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.59
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.57
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.4
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.54
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.34
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.32
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.57
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.32
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.54
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.53
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 1.0
rrs 1472848 n.1003T>G non_coding_transcript_exon_variant 1.0
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 1.0
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 1.0
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 1.0
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.68
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.53
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.49
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.86
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.72
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.95
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.59
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.56
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.91
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.93
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.87
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.95
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.93
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.32
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.89
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.9
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.9
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.72
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.88
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.89
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.91
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.54
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.92
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.92
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.41
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.41
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.41
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.93
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.94
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.61
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.96
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.93
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.67
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.98
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 1.0
rrl 1473815 n.158T>C non_coding_transcript_exon_variant 1.0
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>A non_coding_transcript_exon_variant 1.0
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.67
rrl 1474125 n.468C>G non_coding_transcript_exon_variant 0.67
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.75
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.71
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.75
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.88
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.88
rrl 1474171 n.514C>T non_coding_transcript_exon_variant 0.89
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.8
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.8
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.69
rrl 1474199 n.542G>A non_coding_transcript_exon_variant 0.55
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.5
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.73
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 0.43
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.65
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 0.67
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.44
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.44
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.48
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.48
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.7
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.71
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.56
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.5
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474383 n.726G>T non_coding_transcript_exon_variant 0.64
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.69
rrl 1474412 n.756_768delACCCACACGCGCA non_coding_transcript_exon_variant 1.0
rrl 1474428 n.771C>T non_coding_transcript_exon_variant 1.0
rrl 1474429 n.772G>C non_coding_transcript_exon_variant 1.0
rrl 1474431 n.774G>C non_coding_transcript_exon_variant 1.0
rrl 1474434 n.777_778insAAGGG non_coding_transcript_exon_variant 0.67
rrl 1474437 n.781_782delAA non_coding_transcript_exon_variant 1.0
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 0.5
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.3
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.35
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.42
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.82
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.65
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.59
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.57
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.53
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.84
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.75
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.67
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.8
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.69
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.77
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.6
rrl 1474584 n.927C>T non_coding_transcript_exon_variant 0.56
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.44
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.44
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 0.67
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.69
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.74
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.8
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.52
rrl 1474672 n.1015C>T non_coding_transcript_exon_variant 0.4
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.34
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.83
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.83
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.72
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.79
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.88
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.73
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.49
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.73
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.5
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.84
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.36
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.94
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.54
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.89
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.33
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.43
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.82
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.48
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.42
rrl 1474933 n.1276A>G non_coding_transcript_exon_variant 0.28
rrl 1474946 n.1289C>T non_coding_transcript_exon_variant 0.58
rrl 1474957 n.1300C>T non_coding_transcript_exon_variant 1.0
rrl 1474959 n.1303_1305delCTT non_coding_transcript_exon_variant 1.0
rrl 1475007 n.1350C>T non_coding_transcript_exon_variant 1.0
rrl 1475009 n.1352G>T non_coding_transcript_exon_variant 1.0
rrl 1475013 n.1356G>A non_coding_transcript_exon_variant 1.0
rrl 1475015 n.1358C>T non_coding_transcript_exon_variant 1.0
rrl 1475016 n.1359C>G non_coding_transcript_exon_variant 1.0
rrl 1475018 n.1361G>A non_coding_transcript_exon_variant 1.0
rrl 1475061 n.1404C>A non_coding_transcript_exon_variant 0.83
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.44
rrl 1475129 n.1472G>T non_coding_transcript_exon_variant 0.33
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 0.67
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 0.67
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475552 n.1895G>C non_coding_transcript_exon_variant 0.29
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.75
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 1.0
rrl 1475604 n.1947A>C non_coding_transcript_exon_variant 1.0
rrl 1475619 n.1962C>T non_coding_transcript_exon_variant 1.0
rrl 1475622 n.1965G>T non_coding_transcript_exon_variant 1.0
rrl 1475635 n.1978G>A non_coding_transcript_exon_variant 1.0
rrl 1475637 n.1980T>G non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.41
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.45
rrl 1475686 n.2029C>G non_coding_transcript_exon_variant 0.38
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.42
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.77
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.4
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.38
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.4
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.77
rrl 1475752 n.2095C>T non_coding_transcript_exon_variant 0.42
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.48
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.33
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.48
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.75
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.47
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.46
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.59
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.57
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.87
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.87
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.87
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.84
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.72
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.86
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.33
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.86
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.46
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.8
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.6
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 0.62
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.71
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.8
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.85
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 0.8
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.45
rrl 1476040 n.2383C>T non_coding_transcript_exon_variant 0.91
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.5
rrl 1476046 n.2389G>A non_coding_transcript_exon_variant 0.38
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.56
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476088 n.2431A>T non_coding_transcript_exon_variant 1.0
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 1.0
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 1.0
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.82
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.62
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.41
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.6
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.62
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.53
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.95
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.97
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.58
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.48
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.57
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 0.4
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.54
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.83
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.32
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.53
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.79
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.76
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.79
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.77
rrl 1476299 n.2642C>G non_coding_transcript_exon_variant 0.42
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.35
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.81
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.33
rrl 1476308 n.2651G>C non_coding_transcript_exon_variant 0.35
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.79
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.83
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.32
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.38
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.31
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.34
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.35
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.36
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.52
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.37
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.39
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.59
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.28
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.31
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.78
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.72
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.78
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.78
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.9
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.71
rrl 1476524 n.2867C>T non_coding_transcript_exon_variant 0.8
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.86
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.71
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.75
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.44
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.75
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.84
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.49
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.42
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.72
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.67
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.58
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.55
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.64
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.5
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.44
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.67
rpsA 1833976 c.435C>T synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833994 c.453G>C synonymous_variant 1.0
rpsA 1833997 c.456G>C synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834039 c.498C>T synonymous_variant 1.0
rpsA 1834040 p.Lys167Gln missense_variant 1.0
rpsA 1834051 c.510G>A synonymous_variant 1.0
rpsA 1834213 c.672G>C synonymous_variant 1.0
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 0.67
rpsA 1834298 p.Gln253Glu missense_variant 0.75
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834307 p.Asp256Gln missense_variant 0.75
rpsA 1834312 c.771G>A synonymous_variant 0.75
rpsA 1834327 c.786G>T synonymous_variant 0.6
rpsA 1834345 c.804C>T synonymous_variant 0.5
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834354 c.813G>C synonymous_variant 0.67
rpsA 1834357 c.816T>C synonymous_variant 0.67
rpsA 1834360 c.819G>C synonymous_variant 0.67
rpsA 1834361 c.820T>C synonymous_variant 0.67
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834375 c.834G>C synonymous_variant 0.67
rpsA 1834378 c.837T>C synonymous_variant 0.67
rpsA 1834387 c.846C>T synonymous_variant 0.67
rpsA 1834411 c.870T>C synonymous_variant 1.0
ahpC 2726390 c.198G>C synonymous_variant 1.0
ahpC 2726393 c.201G>C synonymous_variant 1.0
ahpC 2726397 p.Ser69Gly missense_variant 1.0
ahpC 2726405 c.213C>G synonymous_variant 1.0
ahpC 2726408 c.216T>C synonymous_variant 1.0
ahpC 2726432 c.240C>G synonymous_variant 1.0
ahpC 2726436 p.Ile82Val missense_variant 1.0
ahpC 2726444 c.252G>T synonymous_variant 1.0
ahpC 2726447 c.255T>C synonymous_variant 1.0
ahpC 2726453 c.261T>C synonymous_variant 1.0
rpoA 3877494 p.Glu338Asp missense_variant 1.0
rpoA 3877503 c.1005G>C synonymous_variant 1.0
rpoA 3877515 c.993G>C synonymous_variant 1.0
rpoA 3877545 c.963G>C synonymous_variant 1.0
rpoA 3877551 c.957G>A synonymous_variant 1.0
rpoA 3877554 c.954G>C synonymous_variant 1.0
rpoA 3877557 c.951C>G synonymous_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 1.0
rpoA 3877593 c.915C>T synonymous_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 1.0
clpC1 4038569 c.2136C>G synonymous_variant 1.0
clpC1 4038575 c.2130C>G synonymous_variant 1.0
clpC1 4038596 c.2109A>G synonymous_variant 1.0
clpC1 4038623 c.2082A>G synonymous_variant 1.0
clpC1 4038645 p.Glu687Ala missense_variant 1.0
clpC1 4038658 p.Lys683Gln missense_variant 1.0
clpC1 4038661 p.Ser682Thr missense_variant 1.0
clpC1 4038662 c.2043T>C synonymous_variant 1.0
clpC1 4038674 c.2031C>T synonymous_variant 1.0
clpC1 4038683 c.2022T>C synonymous_variant 1.0