EBG00000313339 - n.2015C>T
Drug resistance types
8 Sensitive
49 RR-TB
11 HR-TB
46 MDR-TB
25 Pre-XDR-TB
1 XDR-TB
152 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3.1.1 | 7 |
| 8 | |
| lineage4.3.3 | 7 |
| lineage2.2.1 | 55 |
| lineage4.3.4.1 | 4 |
| lineage4.4 | 1 |
| La1.4 | 1 |
| lineage4.1.2.1 | 16 |
| lineage4.9 | 45 |
| lineage2.2.2 | 5 |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage4.2.2 | 1 |
| lineage4.5 | 1 |
| lineage4.4.2 | 1 |
| lineage3 | 23 |
| lineage4.8 | 13 |
| lineage4.1.1.3 | 3 |
| lineage6 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4 | 15 |
| lineage1.2.1.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage4.4.1.1 | 4 |
| lineage4.8;lineage4.2.1.1 | 1 |
| lineage4.1.3 | 1 |
| lineage3.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.1.1 | 3 |
| lineage4.1.1.3.1 | 4 |
| lineage4;lineage3 | 1 |
| lineage4.6 | 1 |
| lineage1.1.2 | 4 |
| lineage6.1.3 | 1 |
| lineage4.2.1 | 4 |
| lineage4.3.4.2.1 | 5 |
| lineage4.2.2.2 | 1 |
| lineage4.8.1 | 1 |
| lineage4.9;lineage3 | 1 |
| lineage4.1.2 | 3 |
| lineage4.8;lineage3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.7 | 2 |
| lineage1.2.2.2 | 2 |
| lineage4.3.1.1 | 2 |
| lineage4.6.5 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.6.1.1 | 3 |
| La1.8.1 | 1 |
| lineage4.3 | 1 |
| lineage4.8;lineage4.2.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3.4 | 1 |
| La1.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage1.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.8.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 292 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR16156832 | RR-TB | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16278274 | Other | La1.4 | None | SRR1735591 | Other | lineage4.1.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR19303815 | Other | lineage4.8 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304094 | Other | lineage6 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR3675496 | Other | lineage4.1.1.3 | gb | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815490 | Other | lineage3 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4814643 | Other | lineage4.1.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | SRR3675265 | Other | lineage4 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675513 | Other | lineage4.8 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027252 | Other | lineage4.8;lineage4.2.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR3675565 | Other | lineage3 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4817069 | RR-TB | None | ERR4818904 | Other | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | SRR4034769 | Other | lineage4.1.1 | None | ERR4818831 | Other | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007186 | Other | lineage4.6 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR6045424 | Other | lineage1.1.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045705 | Other | lineage4.9 | None | SRR6045726 | Other | lineage3 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045778 | Other | lineage3.1 | None | SRR6046210 | Other | lineage4 | None | SRR6045743 | Other | lineage3 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044841 | Other | lineage4.9 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044857 | Other | lineage4.8.1 | gb | SRR6044916 | Other | lineage4.1.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044936 | Other | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045022 | Other | lineage3.1.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046239 | Other | lineage4.9;lineage3 | None | SRR6046020 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045289 | Other | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | SRR6046291 | Other | lineage3 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046376 | Other | lineage3 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046482 | HR-TB | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046497 | Other | lineage4.9 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046729 | Other | None | SRR6046802 | Other | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6650335 | Sensitive | lineage1.1.3.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | SRR6832644 | Other | lineage4.3.3 | None | SRR7131097 | Sensitive | lineage2.2.1 | None | ERR5087846 | Other | La1.8.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7131123 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645808 | HR-TB | lineage4.8;lineage4.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR10796558 | Sensitive | lineage4 | None | DRR184932 | Other | lineage2.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796599 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796635 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4797559 | Sensitive | lineage1.2.2 | in | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR6197022 | Other | lineage4.9 | None | ERR736816 | Other | lineage4.9 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR6197032 | Other | lineage4.9 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117841 | Other | lineage4.8.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR987695 | HR-TB | lineage4.3.4.2 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315707 | MDR-TB | lineage4.4.1.1.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1140736 | RR-TB | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349172 | RR-TB | lineage4.3.2.1 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1175473 | Other | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173182 | Other | lineage4.6.1.1 | None | SRR1173310 | MDR-TB | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1173834 | Other | lineage4.6.1.1 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
