TB-Profiler result

Run: SRR1175491
Summary

Run ID: SRR1175491

Sample name:

Date: 03-04-2023 03:39:59

Number of reads: 679742

Percentage reads mapped: 15.33

Strain: lineage4

Drug-resistance: MDR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761139 p.His445Asp missense_variant 0.82 rifampicin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.88 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.86 kanamycin, capreomycin, aminoglycosides, amikacin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
pncA 2289050 c.182_191delCACCGGACTA frameshift_variant 0.83 pyrazinamide, pyrazinamide
embB 4247431 p.Met306Ile missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760670 c.864G>C synonymous_variant 0.13
rpoB 760674 c.868T>C synonymous_variant 0.13
rpoB 760946 c.1140A>G synonymous_variant 0.15
rpoB 760982 c.1176G>T synonymous_variant 0.2
rpoB 760985 c.1179G>C synonymous_variant 0.2
rpoB 760991 c.1185G>C synonymous_variant 0.28
rpoB 760997 c.1191G>C synonymous_variant 0.29
rpoB 761003 c.1197C>G synonymous_variant 0.29
rpoB 761006 c.1200C>G synonymous_variant 0.27
rpoB 761013 p.Val403Ile missense_variant 0.24
rpoB 761027 c.1221A>G synonymous_variant 0.24
rpoB 761036 c.1230G>C synonymous_variant 0.22
rpoB 761037 c.1231T>C synonymous_variant 0.22
rpoB 761046 p.Ile414Val missense_variant 0.22
rpoB 761051 c.1245G>C synonymous_variant 0.24
rpoB 761054 c.1248G>T synonymous_variant 0.24
rpoB 761057 c.1251G>C synonymous_variant 0.24
rpoB 761147 c.1341C>T synonymous_variant 0.17
rpoB 761150 c.1344A>C synonymous_variant 0.17
rpoB 761153 c.1347G>C synonymous_variant 0.17
rpoB 761159 c.1353G>C synonymous_variant 0.18
rpoB 761162 c.1356G>C synonymous_variant 0.18
rpoB 761165 c.1359G>C synonymous_variant 0.18
rpoB 761171 c.1365C>T synonymous_variant 0.2
rpoB 761180 c.1374A>G synonymous_variant 0.17
rpoB 761189 c.1383T>C synonymous_variant 0.19
rpoB 761192 c.1386C>G synonymous_variant 0.2
rpoB 761195 c.1389G>C synonymous_variant 0.29
rpoB 761196 p.Leu464Val missense_variant 0.21
rpoB 761207 c.1401C>T synonymous_variant 0.31
rpoB 761213 c.1407G>C synonymous_variant 0.33
rpoB 761234 c.1428G>C synonymous_variant 0.35
rpoB 761243 c.1437G>C synonymous_variant 0.18
rpoB 761249 c.1443A>G synonymous_variant 0.35
rpoB 761252 c.1446C>G synonymous_variant 0.18
rpoB 761255 c.1449T>G synonymous_variant 0.35
rpoB 761258 c.1452G>A synonymous_variant 0.35
rpoB 761261 c.1455G>C synonymous_variant 0.32
rpoB 761264 c.1458C>G synonymous_variant 0.32
rpoB 761273 c.1467T>C synonymous_variant 0.3
rpoB 761276 c.1470G>C synonymous_variant 0.17
rpoB 761303 c.1497G>C synonymous_variant 0.2
rpoB 761318 c.1512G>T synonymous_variant 0.21
rpoB 761327 c.1521A>G synonymous_variant 0.17
rpoB 761518 p.Asp571Gly missense_variant 0.25
rpoB 761537 c.1731C>G synonymous_variant 0.7
rpoB 761557 p.Ala584Gly missense_variant 0.7
rpoB 761562 p.Ala586Ser missense_variant 0.72
rpoB 761565 p.Met587Leu missense_variant 0.68
rpoB 761570 c.1764T>C synonymous_variant 0.74
rpoB 761573 c.1767C>G synonymous_variant 0.74
rpoB 761579 c.1773G>C synonymous_variant 0.78
rpoB 761594 c.1788C>G synonymous_variant 0.65
rpoB 761600 c.1794T>C synonymous_variant 0.65
rpoB 761612 c.1806G>T synonymous_variant 0.7
rpoB 761615 c.1809A>C synonymous_variant 0.7
rpoB 761627 c.1821C>T synonymous_variant 0.47
rpoB 761633 c.1827G>T synonymous_variant 0.3
rpoB 761636 c.1830G>T synonymous_variant 0.25
rpoB 761645 c.1839C>G synonymous_variant 0.33
rpoB 761969 c.2163G>A synonymous_variant 0.2
rpoB 762008 c.2202C>T synonymous_variant 0.23
rpoB 762014 c.2208C>G synonymous_variant 0.23
rpoB 762038 c.2232C>T synonymous_variant 0.23
rpoB 762053 c.2247T>C synonymous_variant 0.23
rpoB 762158 c.2352G>C synonymous_variant 0.18
rpoB 762167 c.2361T>C synonymous_variant 0.15
rpoB 762176 c.2370T>C synonymous_variant 0.15
rpoB 762180 p.Asp792Pro missense_variant 0.15
rpoB 762185 c.2379G>C synonymous_variant 0.23
rpoB 762194 c.2388G>C synonymous_variant 0.2
rpoB 762209 c.2403C>G synonymous_variant 0.2
rpoB 762218 c.2412T>C synonymous_variant 0.2
rpoC 762416 c.-954A>G upstream_gene_variant 0.17
rpoB 762426 p.Ser874Thr missense_variant 0.29
rpoB 762431 p.Asp875Glu missense_variant 0.3
rpoC 762434 c.-936T>A upstream_gene_variant 0.32
rpoC 762443 c.-927G>C upstream_gene_variant 0.4
rpoC 762452 c.-918G>C upstream_gene_variant 0.43
rpoC 762470 c.-900G>C upstream_gene_variant 0.45
rpoB 762475 p.Gly890Ala missense_variant 0.44
rpoC 762485 c.-885G>C upstream_gene_variant 0.42
rpoC 762488 c.-882G>C upstream_gene_variant 0.45
rpoC 762491 c.-879T>C upstream_gene_variant 0.43
rpoC 762503 c.-867G>C upstream_gene_variant 0.37
rpoC 762509 c.-861T>C upstream_gene_variant 0.29
rpoB 762858 p.Thr1018Ser missense_variant 0.15
rpoC 762863 c.-507T>C upstream_gene_variant 0.33
rpoB 762879 p.Met1025Leu missense_variant 0.63
rpoC 762899 c.-471G>C upstream_gene_variant 0.8
rpoC 762920 c.-450C>T upstream_gene_variant 0.84
rpoC 762923 c.-447C>G upstream_gene_variant 0.86
rpoC 762929 c.-441G>C upstream_gene_variant 0.86
rpoC 762959 c.-411G>C upstream_gene_variant 0.9
rpoC 762962 c.-408C>T upstream_gene_variant 0.87
rpoC 762980 c.-390T>C upstream_gene_variant 0.75
rpoC 762989 c.-381G>C upstream_gene_variant 0.68
rpoC 762995 c.-375G>C upstream_gene_variant 0.55
rpoC 763031 c.-339T>G upstream_gene_variant 0.15
rpoC 763034 c.-336C>G upstream_gene_variant 0.21
rpoC 763040 c.-330C>G upstream_gene_variant 0.21
rpoC 763052 c.-318G>C upstream_gene_variant 0.24
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.24
rpoC 763058 c.-312C>G upstream_gene_variant 0.26
rpoC 763070 c.-300T>C upstream_gene_variant 0.61
rpoB 763075 p.Thr1090Ile missense_variant 0.55
rpoC 763082 c.-288C>A upstream_gene_variant 0.66
rpoC 763094 c.-276G>C upstream_gene_variant 0.72
rpoB 763126 p.Pro1107Gln missense_variant 0.73
rpoC 763133 c.-237G>C upstream_gene_variant 0.76
rpoC 763148 c.-222G>C upstream_gene_variant 0.7
rpoC 763160 c.-210G>C upstream_gene_variant 0.69
rpoB 763161 p.Leu1119Met missense_variant 0.64
rpoC 763166 c.-204A>G upstream_gene_variant 0.69
rpoC 763169 c.-201A>G upstream_gene_variant 0.65
rpoB 763170 p.Leu1122Met missense_variant 0.62
rpoC 763181 c.-189G>C upstream_gene_variant 0.68
rpoC 763187 c.-183C>G upstream_gene_variant 0.64
rpoC 763202 c.-168A>C upstream_gene_variant 0.44
rpoC 763456 c.87A>G synonymous_variant 0.18
rpoC 763483 c.114G>C synonymous_variant 0.33
rpoC 763486 c.117T>C synonymous_variant 0.46
rpoC 763492 c.123G>C synonymous_variant 0.43
rpoC 763504 c.135C>T synonymous_variant 0.45
rpoC 763511 p.Cys48Gly missense_variant 0.59
rpoC 763517 p.Lys50Gln missense_variant 0.65
rpoC 763528 c.159G>T synonymous_variant 0.72
rpoC 763532 p.Thr55Ser missense_variant 0.71
rpoC 763546 c.177A>G synonymous_variant 0.7
rpoC 763550 p.Tyr61Ala missense_variant 0.67
rpoC 763570 c.201G>T synonymous_variant 0.59
rpoC 763573 c.204G>C synonymous_variant 0.62
rpoC 763589 p.Ile74Val missense_variant 0.71
rpoC 763615 c.246G>C synonymous_variant 0.68
rpoC 763619 p.Arg84Lys missense_variant 0.6
rpoC 763622 p.Ala85Ser missense_variant 0.62
rpoC 763625 p.Lys86Ser missense_variant 0.62
rpoC 763636 c.267T>C synonymous_variant 0.71
rpoC 763642 c.273G>C synonymous_variant 0.77
rpoC 763657 c.288G>A synonymous_variant 0.81
rpoC 763660 c.291T>C synonymous_variant 0.84
rpoC 763666 c.297G>C synonymous_variant 0.87
rpoC 763696 c.327T>C synonymous_variant 0.85
rpoC 763708 c.339G>C synonymous_variant 0.88
rpoC 763711 c.342G>C synonymous_variant 0.88
rpoC 763717 c.348T>C synonymous_variant 0.86
rpoC 763723 c.354G>C synonymous_variant 0.86
rpoC 763727 p.Leu120Met missense_variant 0.83
rpoC 763732 c.363C>G synonymous_variant 0.85
rpoC 763744 c.375G>C synonymous_variant 0.88
rpoC 763751 p.Ile128Val missense_variant 0.81
rpoC 763765 c.396T>C synonymous_variant 0.67
rpoC 763772 p.Val135Met missense_variant 0.4
rpoC 763864 c.495G>A synonymous_variant 0.15
rpoC 764316 p.Ala316Val missense_variant 0.24
rpoC 764365 c.996C>T synonymous_variant 0.76
rpoC 764371 c.1002G>C synonymous_variant 0.74
rpoC 764377 c.1008C>G synonymous_variant 0.69
rpoC 764380 c.1011G>C synonymous_variant 0.69
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.65
rpoC 764387 c.1018T>C synonymous_variant 0.75
rpoC 764398 c.1029G>A synonymous_variant 0.76
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.79
rpoC 764410 c.1041G>C synonymous_variant 0.72
rpoC 764428 c.1059G>T synonymous_variant 0.44
rpoC 764431 c.1062G>C synonymous_variant 0.4
rpoC 764432 p.Lys355Arg missense_variant 0.33
rpoC 764435 c.1066A>C synonymous_variant 0.4
rpoC 764446 c.1077T>C synonymous_variant 0.6
rpoC 764449 c.1080G>C synonymous_variant 0.6
rpoC 764455 c.1086G>C synonymous_variant 0.61
rpoC 764458 c.1089G>C synonymous_variant 0.68
rpoC 764461 c.1092A>G synonymous_variant 0.69
rpoC 764497 c.1128A>G synonymous_variant 0.78
rpoC 764498 p.Ser377Ala missense_variant 0.67
rpoC 764503 c.1134G>C synonymous_variant 0.67
rpoC 764506 c.1137C>T synonymous_variant 0.64
rpoC 764521 c.1152T>C synonymous_variant 0.62
rpoC 764527 c.1158C>T synonymous_variant 0.5
rpoC 764530 c.1161C>T synonymous_variant 0.5
rpoC 764533 c.1164C>T synonymous_variant 0.43
rpoC 764536 c.1167G>T synonymous_variant 0.43
rpoC 764548 c.1179G>C synonymous_variant 0.18
rpoC 764549 p.Pro394Thr missense_variant 0.18
rpoC 764560 c.1191T>C synonymous_variant 0.14
rpoC 764575 c.1206T>G synonymous_variant 0.25
rpoC 764587 c.1218C>G synonymous_variant 0.26
rpoC 764611 c.1242G>C synonymous_variant 0.7
rpoC 764632 c.1263T>C synonymous_variant 0.79
rpoC 764635 c.1266C>G synonymous_variant 0.69
rpoC 764650 c.1281G>T synonymous_variant 0.84
rpoC 764660 p.Val431Ile missense_variant 0.79
rpoC 764677 c.1308C>G synonymous_variant 0.83
rpoC 764706 p.Leu446Gln missense_variant 0.76
rpoC 764722 c.1353G>C synonymous_variant 0.7
rpoC 764740 p.Met457Ile missense_variant 0.57
rpoC 764746 c.1377G>C synonymous_variant 0.5
rpoC 764750 p.Val461Ile missense_variant 0.33
rpoC 764764 c.1395T>C synonymous_variant 0.22
rpoC 764791 c.1422C>G synonymous_variant 0.33
rpoC 764803 c.1434C>T synonymous_variant 0.27
rpoC 764809 c.1440C>T synonymous_variant 0.25
rpoC 764810 p.Pro481Ala missense_variant 0.25
rpoC 764815 c.1446A>G synonymous_variant 0.25
rpoC 764824 c.1455T>C synonymous_variant 0.23
rpoC 764827 c.1458G>C synonymous_variant 0.23
rpoC 764858 c.1489T>C synonymous_variant 0.27
rpoC 764869 c.1500C>T synonymous_variant 0.29
rpoC 764875 c.1506C>A synonymous_variant 0.27
rpoC 764887 c.1518G>C synonymous_variant 0.15
rpoC 764888 c.1519T>C synonymous_variant 0.15
rpoC 764893 c.1524T>C synonymous_variant 0.14
rpoC 764911 c.1542A>G synonymous_variant 0.25
rpoC 764912 p.Met515Gln missense_variant 0.25
rpoC 764917 c.1548G>C synonymous_variant 0.19
rpoC 764920 c.1551G>C synonymous_variant 0.19
rpoC 764935 c.1566T>C synonymous_variant 0.19
rpoC 764948 c.1579_1581delTTGinsCTC synonymous_variant 0.25
rpoC 764953 c.1584G>C synonymous_variant 0.24
rpoC 764956 c.1587T>C synonymous_variant 0.24
rpoC 764958 p.Glu530Ala missense_variant 0.21
rpoC 764968 c.1599T>C synonymous_variant 0.2
rpoC 764995 c.1626C>G synonymous_variant 0.79
rpoC 766996 c.3627C>T synonymous_variant 0.33
rpoC 767014 c.3645G>C synonymous_variant 0.23
rpoC 767017 c.3648C>G synonymous_variant 0.31
rpoC 767023 p.Asp1218Glu missense_variant 0.36
rpoC 767038 c.3669G>C synonymous_variant 0.33
rpoC 767059 c.3690T>C synonymous_variant 0.38
rpoC 767098 c.3729T>C synonymous_variant 0.38
rpoC 767104 c.3735C>G synonymous_variant 0.38
rpoC 767106 p.Asn1246Ile missense_variant 0.25
rpoC 767122 c.3753C>T synonymous_variant 0.18
rpoC 767125 c.3756G>C synonymous_variant 0.27
rpoC 767146 c.3777G>T synonymous_variant 0.22
rpoC 767167 c.3798C>T synonymous_variant 0.22
rpoC 767180 p.Ala1271Gln missense_variant 0.22
rpoC 767185 c.3816G>T synonymous_variant 0.18
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781572 p.Gln5Asn missense_variant 0.2
rpsL 781595 c.36T>C synonymous_variant 0.31
rpsL 781598 c.39G>C synonymous_variant 0.23
rpsL 781606 p.Ile16Thr missense_variant 0.23
rpsL 781608 p.Ser17Ala missense_variant 0.31
rpsL 781622 c.63C>G synonymous_variant 0.21
rpsL 781625 c.66G>A synonymous_variant 0.21
rpsL 781628 c.69T>C synonymous_variant 0.29
rpsL 781631 c.72G>C synonymous_variant 0.21
rpsL 781655 c.96T>C synonymous_variant 0.29
rpsL 781658 c.99A>G synonymous_variant 0.25
rpsL 781664 c.105C>T synonymous_variant 0.21
rpsL 781682 c.123T>G synonymous_variant 0.13
rpsL 781760 c.201T>C synonymous_variant 0.25
rpsL 781766 c.207C>T synonymous_variant 0.15
rpsL 781794 p.Met79Leu missense_variant 0.15
rpsL 781802 c.243G>C synonymous_variant 0.23
rplC 800693 c.-116A>C upstream_gene_variant 0.14
rplC 800702 c.-107G>C upstream_gene_variant 0.14
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.38
rplC 800715 c.-94A>C upstream_gene_variant 0.21
rplC 800720 c.-89T>C upstream_gene_variant 0.36
rplC 800723 c.-86C>G upstream_gene_variant 0.36
rplC 800729 c.-80G>C upstream_gene_variant 0.13
rplC 800735 c.-74C>G upstream_gene_variant 0.19
rplC 800762 c.-47T>C upstream_gene_variant 0.15
fbiC 1303958 p.Cys343Tyr missense_variant 0.5
embR 1417525 c.-178G>A upstream_gene_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471914 n.69A>G non_coding_transcript_exon_variant 0.19
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 0.19
rrs 1471922 n.78T>C non_coding_transcript_exon_variant 0.23
rrs 1471925 n.81delC non_coding_transcript_exon_variant 0.23
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.36
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.36
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 0.21
rrs 1471943 n.98T>C non_coding_transcript_exon_variant 0.2
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.63
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.8
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.84
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.79
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.8
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.85
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.91
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.92
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.86
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.8
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.77
rrs 1472256 n.411T>C non_coding_transcript_exon_variant 0.71
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.28
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.29
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.43
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.55
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.59
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.67
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.73
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.76
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.71
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.72
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.71
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.57
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.55
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.56
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.66
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.8
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.81
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.79
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.8
rrs 1472606 n.761C>G non_coding_transcript_exon_variant 0.8
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.77
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.77
rrs 1472645 n.800G>C non_coding_transcript_exon_variant 0.75
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.72
rrs 1472660 n.815T>A non_coding_transcript_exon_variant 0.76
rrs 1472666 n.821G>T non_coding_transcript_exon_variant 0.69
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.62
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.58
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.59
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.61
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.6
rrs 1472686 n.841G>A non_coding_transcript_exon_variant 0.55
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.55
rrs 1472694 n.849C>A non_coding_transcript_exon_variant 0.66
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.66
rrs 1472714 n.869A>T non_coding_transcript_exon_variant 0.81
rrs 1472767 n.922G>A non_coding_transcript_exon_variant 0.74
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.74
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.54
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.84
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.84
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.86
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.9
rrs 1472982 n.1137G>A non_coding_transcript_exon_variant 0.85
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.84
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.85
rrs 1472991 n.1146G>A non_coding_transcript_exon_variant 0.84
rrs 1472993 n.1148G>T non_coding_transcript_exon_variant 0.84
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.87
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.87
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.87
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.86
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.86
rrs 1473097 n.1252G>A non_coding_transcript_exon_variant 0.82
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.86
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.81
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.83
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.83
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.87
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.81
rrs 1473134 n.1289T>C non_coding_transcript_exon_variant 0.84
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.86
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.85
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.82
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.84
rrs 1473226 n.1381C>T non_coding_transcript_exon_variant 0.89
rrs 1473269 n.1424C>T non_coding_transcript_exon_variant 0.9
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.92
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.88
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.89
rrs 1473291 n.1446_1447insT non_coding_transcript_exon_variant 0.87
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.89
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.85
rrs 1473320 n.1475G>A non_coding_transcript_exon_variant 0.85
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 0.85
rrl 1473391 n.-267C>T upstream_gene_variant 0.32
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 0.15
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 0.2
rrl 1473757 n.100T>G non_coding_transcript_exon_variant 0.19
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.23
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.3
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.33
rrl 1473828 n.173_174delTG non_coding_transcript_exon_variant 0.52
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.22
rrl 1473834 n.178_179insTAG non_coding_transcript_exon_variant 0.52
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.78
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.8
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.8
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.82
rrl 1473883 n.226A>G non_coding_transcript_exon_variant 0.72
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.81
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.8
rrl 1473890 n.233T>C non_coding_transcript_exon_variant 0.72
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.81
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 0.78
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.74
rrl 1473917 n.260G>C non_coding_transcript_exon_variant 0.69
rrl 1473935 n.278C>A non_coding_transcript_exon_variant 0.19
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.14
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.3
rrl 1474153 n.496C>T non_coding_transcript_exon_variant 0.34
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 0.33
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 0.58
rrl 1474166 n.509G>A non_coding_transcript_exon_variant 0.68
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.8
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 0.78
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.84
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 0.78
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.87
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.84
rrl 1474265 n.608G>T non_coding_transcript_exon_variant 0.72
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.71
rrl 1474275 n.618T>A non_coding_transcript_exon_variant 0.61
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.25
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.2
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.2
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.4
rrl 1474317 n.660G>A non_coding_transcript_exon_variant 0.5
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.61
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 0.59
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.59
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.59
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.61
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.6
rrl 1474376 n.719T>A non_coding_transcript_exon_variant 0.6
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.62
rrl 1474444 n.787G>C non_coding_transcript_exon_variant 0.26
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.6
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.64
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 0.81
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.84
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.88
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.9
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.91
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.89
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.89
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.92
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.94
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.87
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.88
rrl 1474601 n.944C>T non_coding_transcript_exon_variant 0.88
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.88
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.87
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.87
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.87
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.87
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.78
rrl 1474710 n.1053T>G non_coding_transcript_exon_variant 0.18
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.2
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.18
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.66
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.58
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.67
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.59
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.68
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.72
rrl 1474770 n.1113G>A non_coding_transcript_exon_variant 0.7
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.71
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.71
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.8
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.72
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.84
rrl 1474794 n.1137C>A non_coding_transcript_exon_variant 0.84
rrl 1474800 n.1143T>C non_coding_transcript_exon_variant 0.81
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.9
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.85
rrl 1474830 n.1173A>C non_coding_transcript_exon_variant 0.88
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.83
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.83
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.79
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.75
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.79
rrl 1474920 n.1263G>A non_coding_transcript_exon_variant 0.7
rrl 1474935 n.1278A>G non_coding_transcript_exon_variant 0.56
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.47
rrl 1475060 n.1404delC non_coding_transcript_exon_variant 0.65
rrl 1475065 n.1408G>A non_coding_transcript_exon_variant 0.63
rrl 1475068 n.1411A>T non_coding_transcript_exon_variant 0.56
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.77
rrl 1475078 n.1421T>A non_coding_transcript_exon_variant 0.65
rrl 1475081 n.1424C>T non_coding_transcript_exon_variant 0.67
rrl 1475084 n.1427G>T non_coding_transcript_exon_variant 0.64
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 0.71
rrl 1475108 n.1451C>T non_coding_transcript_exon_variant 0.68
rrl 1475111 n.1454G>A non_coding_transcript_exon_variant 0.67
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.81
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 0.78
rrl 1475119 n.1462C>T non_coding_transcript_exon_variant 0.67
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 0.73
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.69
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.71
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.23
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.24
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.2
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.27
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 0.18
rrl 1475482 n.1825A>T non_coding_transcript_exon_variant 0.18
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.53
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.63
rrl 1475536 n.1879C>A non_coding_transcript_exon_variant 0.56
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.56
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.56
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.55
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.54
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.54
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.54
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.18
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.4
rrl 1475652 n.1995C>T non_coding_transcript_exon_variant 0.35
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.54
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.63
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.71
rrl 1475692 n.2035G>C non_coding_transcript_exon_variant 0.75
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.87
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.87
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.88
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.87
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.85
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.86
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.84
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.84
rrl 1475963 n.2306G>T non_coding_transcript_exon_variant 0.83
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.78
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.79
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.76
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.71
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.64
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.61
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.43
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.33
rrl 1476032 n.2375C>G non_coding_transcript_exon_variant 0.39
rrl 1476033 n.2376T>G non_coding_transcript_exon_variant 0.41
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.39
rrl 1476045 n.2388G>A non_coding_transcript_exon_variant 0.36
rrl 1476046 n.2389G>C non_coding_transcript_exon_variant 0.3
rrl 1476047 n.2390G>C non_coding_transcript_exon_variant 0.36
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.38
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.46
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.37
rrl 1476079 n.2422G>A non_coding_transcript_exon_variant 0.3
rrl 1476080 n.2423T>C non_coding_transcript_exon_variant 0.33
rrl 1476081 n.2424A>T non_coding_transcript_exon_variant 0.3
rrl 1476082 n.2425T>C non_coding_transcript_exon_variant 0.3
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.46
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.32
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.52
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.62
rrl 1476104 n.2448delG non_coding_transcript_exon_variant 0.64
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.71
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.77
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.85
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.89
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.87
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.91
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.91
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.91
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.88
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.84
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.83
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.83
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.84
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.8
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.62
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.64
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.67
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.65
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.62
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.6
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.68
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.65
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.83
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.87
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.86
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.88
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.82
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.85
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.81
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.81
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.75
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.74
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.73
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 0.74
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.74
rrl 1476540 n.2883C>T non_coding_transcript_exon_variant 0.77
rrl 1476544 n.2887T>A non_coding_transcript_exon_variant 0.73
rrl 1476566 n.2909A>T non_coding_transcript_exon_variant 0.76
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.77
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.84
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.84
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.82
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.7
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.69
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.8
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.77
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.79
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.79
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.79
rrl 1476630 n.2973A>T non_coding_transcript_exon_variant 0.78
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 0.35
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 0.17
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 0.18
rpsA 1833601 p.Glu20Asp missense_variant 0.17
rpsA 1833676 c.135A>G synonymous_variant 0.18
rpsA 1833679 c.138G>C synonymous_variant 0.24
rpsA 1833685 c.144G>C synonymous_variant 0.54
rpsA 1833694 c.153G>C synonymous_variant 0.52
rpsA 1833704 p.Ile55Val missense_variant 0.54
rpsA 1833709 c.168C>T synonymous_variant 0.7
rpsA 1833721 c.180A>G synonymous_variant 0.64
rpsA 1833727 c.186G>C synonymous_variant 0.72
rpsA 1833734 p.Ala65Ser missense_variant 0.74
rpsA 1833742 c.201A>G synonymous_variant 0.71
rpsA 1833745 c.204G>T synonymous_variant 0.67
rpsA 1833748 c.207C>G synonymous_variant 0.62
rpsA 1833753 p.Lys71Arg missense_variant 0.62
rpsA 1833781 c.240T>C synonymous_variant 0.44
rpsA 1833782 p.Ser81Lys missense_variant 0.41
rpsA 1833790 c.249T>C synonymous_variant 0.44
rpsA 1833802 c.261A>G synonymous_variant 0.47
rpsA 1833811 c.270G>C synonymous_variant 0.29
rpsA 1833814 c.273C>T synonymous_variant 0.2
rpsA 1833815 p.Thr92Gln missense_variant 0.2
rpsA 1833829 c.288A>G synonymous_variant 0.2
rpsA 1833832 c.291G>A synonymous_variant 0.27
rpsA 1833838 c.297G>C synonymous_variant 0.19
rpsA 1833841 c.300C>G synonymous_variant 0.25
rpsA 1833847 c.306C>G synonymous_variant 0.14
rpsA 1833856 c.315A>G synonymous_variant 0.25
rpsA 1833862 c.321G>T synonymous_variant 0.18
rpsA 1833894 p.Ala118Glu missense_variant 0.18
rpsA 1834030 c.489C>G synonymous_variant 0.19
rpsA 1834034 p.Ile165Leu missense_variant 0.33
rpsA 1834040 p.Lys167Gln missense_variant 0.42
rpsA 1834061 p.Ile174Leu missense_variant 0.34
rpsA 1834069 c.528G>C synonymous_variant 0.38
rpsA 1834090 c.549G>C synonymous_variant 0.36
rpsA 1834096 c.555G>C synonymous_variant 0.32
rpsA 1834099 c.558C>G synonymous_variant 0.3
rpsA 1834102 c.561T>C synonymous_variant 0.31
rpsA 1834109 p.Trp190Leu missense_variant 0.31
rpsA 1834114 c.573G>C synonymous_variant 0.31
rpsA 1834123 c.582C>G synonymous_variant 0.32
rpsA 1834240 c.699T>C synonymous_variant 0.17
rpsA 1834249 c.708T>C synonymous_variant 0.18
rpsA 1834451 c.910T>C synonymous_variant 0.17
rpsA 1834465 c.924T>C synonymous_variant 0.17
rpsA 1834468 c.927A>G synonymous_variant 0.17
rpsA 1834474 c.933C>G synonymous_variant 0.17
rpsA 1834489 c.948T>C synonymous_variant 0.18
rpsA 1834495 c.954G>A synonymous_variant 0.2
rpsA 1834609 c.1068T>C synonymous_variant 0.14
rpsA 1834619 c.1078T>C synonymous_variant 0.27
rpsA 1834623 p.Ser361Cys missense_variant 0.14
rpsA 1834633 c.1092A>G synonymous_variant 0.27
rpsA 1834639 c.1098T>C synonymous_variant 0.27
rpsA 1834645 c.1104C>T synonymous_variant 0.21
rpsA 1834654 p.Glu371Asp missense_variant 0.19
rpsA 1834663 c.1122C>T synonymous_variant 0.14
rpsA 1834666 c.1125G>C synonymous_variant 0.14
rpsA 1834667 p.Ala376Ser missense_variant 0.29
rpsA 1834688 c.1147_1149delAGTinsTCG synonymous_variant 0.15
Rv1979c 2222854 p.Ile104Thr missense_variant 0.95
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517917 c.-198G>C upstream_gene_variant 0.3
kasA 2517941 c.-174C>G upstream_gene_variant 0.33
kasA 2517953 c.-162C>T upstream_gene_variant 0.3
kasA 2517959 c.-156C>T upstream_gene_variant 0.25
kasA 2517962 c.-153C>G upstream_gene_variant 0.25
kasA 2517968 c.-147T>A upstream_gene_variant 0.25
kasA 2517974 c.-141T>C upstream_gene_variant 0.15
folC 2746714 c.884dupG frameshift_variant 0.25
thyX 3067445 c.501C>T synonymous_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 0.93
ald 3086788 c.-32T>C upstream_gene_variant 0.94
Rv3083 3448384 c.-120_-119insCC upstream_gene_variant 0.25
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612009 p.Ala370Thr missense_variant 1.0
fbiA 3640625 c.87_89dupTGC disruptive_inframe_insertion 0.18
rpoA 3878283 p.Glu75Asp missense_variant 0.2
rpoA 3878292 c.216T>C synonymous_variant 0.18
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4038551 c.2154C>G synonymous_variant 0.22
clpC1 4038596 c.2109A>G synonymous_variant 0.21
clpC1 4038623 c.2082A>G synonymous_variant 0.25
clpC1 4038815 c.1890G>C synonymous_variant 0.18
clpC1 4038842 c.1863G>C synonymous_variant 0.38
clpC1 4038857 c.1848C>G synonymous_variant 0.15
clpC1 4038860 c.1845G>C synonymous_variant 0.42
clpC1 4038878 c.1827A>G synonymous_variant 0.33
clpC1 4038884 c.1821C>T synonymous_variant 0.17
clpC1 4038890 c.1815G>A synonymous_variant 0.14
clpC1 4039200 p.Ala502Asp missense_variant 0.15
clpC1 4039220 c.1485G>C synonymous_variant 0.2
clpC1 4039469 c.1236T>C synonymous_variant 0.2
clpC1 4039472 c.1233G>C synonymous_variant 0.18
clpC1 4039522 c.1183C>T synonymous_variant 0.19
clpC1 4039649 c.1056G>C synonymous_variant 0.22
clpC1 4039661 c.1044T>C synonymous_variant 0.2
clpC1 4039673 c.1032G>C synonymous_variant 0.14
clpC1 4039700 c.1005C>T synonymous_variant 0.17
clpC1 4039850 c.855T>C synonymous_variant 0.27
clpC1 4039865 c.840T>C synonymous_variant 0.17
clpC1 4039887 p.Leu273Thr missense_variant 0.17
clpC1 4039889 c.816G>C synonymous_variant 0.17
clpC1 4039898 c.807C>G synonymous_variant 0.31
clpC1 4039904 c.801A>G synonymous_variant 0.28
clpC1 4039929 c.775_776delAGinsTC synonymous_variant 0.19
clpC1 4039934 c.771G>C synonymous_variant 0.27
clpC1 4039937 p.Val256Ile missense_variant 0.25
clpC1 4039946 c.759A>C synonymous_variant 0.27
clpC1 4039949 c.756G>C synonymous_variant 0.24
clpC1 4039952 c.753T>C synonymous_variant 0.31
clpC1 4039955 c.750G>C synonymous_variant 0.29
clpC1 4039960 p.Thr249Ser missense_variant 0.43
clpC1 4039966 p.Leu247Val missense_variant 0.43
clpC1 4039979 c.726C>G synonymous_variant 0.48
clpC1 4039991 c.714G>A synonymous_variant 0.9
clpC1 4039994 p.Glu237Asp missense_variant 0.33
clpC1 4039998 p.Gly236Asn missense_variant 0.35
clpC1 4040000 p.His235Lys missense_variant 0.37
clpC1 4040009 c.696C>G synonymous_variant 0.47
clpC1 4040018 c.687G>C synonymous_variant 0.39
clpC1 4040021 c.684A>C synonymous_variant 0.41
clpC1 4040024 c.681A>G synonymous_variant 0.5
clpC1 4040033 c.672G>C synonymous_variant 0.61
clpC1 4040063 c.642G>C synonymous_variant 0.47
clpC1 4040066 c.639G>C synonymous_variant 0.44
clpC1 4040069 c.636G>C synonymous_variant 0.33
clpC1 4040081 p.Thr208Ser missense_variant 0.36
clpC1 4040087 c.618G>C synonymous_variant 0.36
clpC1 4040090 c.615T>G synonymous_variant 0.43
clpC1 4040093 c.612C>G synonymous_variant 0.36
clpC1 4040096 p.Val203Ile missense_variant 0.38
clpC1 4040105 c.600C>G synonymous_variant 0.33
clpC1 4040108 c.597G>C synonymous_variant 0.36
clpC1 4040117 c.588A>G synonymous_variant 0.31
clpC1 4040129 c.576C>G synonymous_variant 0.29
clpC1 4040147 c.558A>G synonymous_variant 0.2
clpC1 4040291 c.414G>C synonymous_variant 0.18
clpC1 4040307 p.Arg133Lys missense_variant 0.18
clpC1 4040310 p.Thr132Asn missense_variant 0.18
clpC1 4040312 c.393G>C synonymous_variant 0.2
clpC1 4040315 p.Glu130Asp missense_variant 0.2
clpC1 4040324 c.381G>C synonymous_variant 0.2
clpC1 4040333 c.372G>C synonymous_variant 0.36
clpC1 4040342 c.363C>G synonymous_variant 0.4
clpC1 4040348 c.357G>C synonymous_variant 0.45
clpC1 4040354 c.351A>G synonymous_variant 0.44
clpC1 4040357 c.348T>C synonymous_variant 0.5
clpC1 4040363 c.342A>C synonymous_variant 0.55
clpC1 4040375 c.330G>C synonymous_variant 0.38
clpC1 4040380 c.325T>C synonymous_variant 0.42
clpC1 4040381 c.324T>C synonymous_variant 0.42
clpC1 4040387 c.318A>G synonymous_variant 0.42
clpC1 4040393 c.312G>C synonymous_variant 0.45
clpC1 4040411 c.294T>G synonymous_variant 0.42
clpC1 4040432 c.271_273delAGCinsTCG synonymous_variant 0.29
clpC1 4040444 c.261C>G synonymous_variant 0.17
panD 4044182 c.97_99dupATG conservative_inframe_insertion 0.18
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407874 p.Val110Gly missense_variant 0.86
gid 4408156 p.Leu16Arg missense_variant 0.94