lineage | Count |
---|---|
La1.8.1 | 5 |
lineage2.2.1 | 17 |
La1.7.1 | 2 |
lineage4.3.3 | 6 |
lineage1.2.2 | 1 |
lineage2.2 | 2 |
lineage4.6.2.2 | 1 |
lineage4.8 | 5 |
lineage4 | 5 |
lineage1.1.3.1 | 2 |
lineage3 | 3 |
lineage4.1.2.1 | 7 |
lineage4.4.1.1 | 3 |
lineage4.9 | 13 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage4.3.4.1 | 1 |
La3 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.9;lineage4.2.1 | 1 |
lineage4.2.2.2 | 1 |
lineage3.1.1 | 2 |
lineage6.2.3;lineage1.1.2 | 1 |
lineage4.9;La1.3 | 1 |
lineage2.2.1.2 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.8;lineage4.3.3 | 4 |
lineage4.7 | 1 |
lineage4.4.2 | 1 |
spoligotype | Count |
---|---|
None | 95 |
ID | Drug resistance | Lineage | Country iso2 | SRR1792011 | Other | La1.8.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | ERR4816982 | Other | lineage4 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814681 | Other | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR2229233 | Sensitive | lineage4 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4817127 | Other | lineage4.1.2.1 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR4819073 | Other | lineage4.1.2.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4820679 | Other | lineage4.8 | None | ERR4820284 | Other | lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4820192 | Other | La3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6045263 | Sensitive | lineage4.9 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | SRR6046737 | Other | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR11465563 | Other | lineage4.1.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR036207 | Other | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3797081 | Sensitive | lineage4 | None | ERR4188213 | HR-TB | La1.8.1 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1175473 | Other | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR1735596 | RR-TB | lineage4.9 | None |
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