Run ID: SRR1175473
Sample name:
Date: 03-04-2023 03:39:44
Number of reads: 96660
Percentage reads mapped: 7.06
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.67 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 1.0 |
gyrA | 8967 | p.Ala556Lys | missense_variant | 0.67 |
gyrA | 8978 | c.1677C>T | synonymous_variant | 0.67 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.67 |
fgd1 | 491492 | p.Pro237His | missense_variant | 0.5 |
fgd1 | 491720 | p.Pro313Gln | missense_variant | 0.25 |
rpoB | 760982 | c.1176G>T | synonymous_variant | 0.5 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.56 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.67 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.7 |
rpoB | 761003 | c.1197C>G | synonymous_variant | 0.6 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.7 |
rpoB | 761013 | p.Val403Ile | missense_variant | 0.55 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.6 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.67 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.75 |
rpoB | 761046 | p.Ile414Val | missense_variant | 0.75 |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.75 |
rpoB | 761054 | c.1248G>T | synonymous_variant | 0.86 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.86 |
rpoB | 761180 | c.1374A>G | synonymous_variant | 0.67 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.67 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.5 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.75 |
rpoB | 761196 | p.Leu464Val | missense_variant | 0.5 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.5 |
rpoB | 761213 | c.1407G>C | synonymous_variant | 0.5 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.6 |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.71 |
rpoB | 761557 | p.Ala584Gly | missense_variant | 0.75 |
rpoB | 761562 | p.Ala586Ser | missense_variant | 0.75 |
rpoB | 761565 | p.Met587Leu | missense_variant | 0.75 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.75 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.75 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.75 |
rpoB | 761594 | c.1788C>G | synonymous_variant | 0.75 |
rpoB | 761600 | c.1794T>C | synonymous_variant | 0.86 |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.86 |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.86 |
rpoB | 761627 | c.1821C>T | synonymous_variant | 0.67 |
rpoB | 762858 | p.Thr1018Ser | missense_variant | 0.8 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.88 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.76 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.83 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.82 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.82 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.86 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.8 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.78 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.79 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.8 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.75 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 0.75 |
rpoC | 763053 | c.-317_-315delTTGinsCTC | upstream_gene_variant | 0.75 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 0.75 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.85 |
rpoB | 763075 | p.Thr1090Ile | missense_variant | 0.85 |
rpoC | 763082 | c.-288C>A | upstream_gene_variant | 0.79 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.75 |
rpoB | 763126 | p.Pro1107Gln | missense_variant | 0.75 |
rpoC | 763133 | c.-237G>C | upstream_gene_variant | 0.8 |
rpoC | 763148 | c.-222G>C | upstream_gene_variant | 0.64 |
rpoC | 763160 | c.-210G>C | upstream_gene_variant | 0.43 |
rpoB | 763161 | p.Leu1119Met | missense_variant | 0.33 |
rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.33 |
rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.33 |
rpoB | 763170 | p.Leu1122Met | missense_variant | 0.33 |
rpoC | 763181 | c.-189G>C | upstream_gene_variant | 0.33 |
rpoC | 763187 | c.-183C>G | upstream_gene_variant | 0.4 |
rpoC | 763483 | c.114G>C | synonymous_variant | 0.33 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.4 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.57 |
rpoC | 763504 | c.135C>T | synonymous_variant | 0.71 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 0.7 |
rpoC | 763517 | p.Lys50Gln | missense_variant | 0.75 |
rpoC | 763528 | c.159G>T | synonymous_variant | 0.75 |
rpoC | 763532 | p.Thr55Ser | missense_variant | 0.75 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.82 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.82 |
rpoC | 763570 | c.201G>T | synonymous_variant | 0.78 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.83 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.86 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.91 |
rpoC | 763619 | p.Arg84Lys | missense_variant | 0.91 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.91 |
rpoC | 763625 | p.Lys86Ser | missense_variant | 0.91 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.92 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.93 |
rpoC | 763657 | c.288G>A | synonymous_variant | 0.95 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.95 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.96 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.91 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.87 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.87 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.87 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.87 |
rpoC | 763727 | p.Leu120Met | missense_variant | 0.83 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.79 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.7 |
rpoC | 763751 | p.Ile128Val | missense_variant | 0.65 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.54 |
rpoC | 764316 | p.Ala316Val | missense_variant | 0.5 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.8 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.73 |
rpoC | 764377 | c.1008C>G | synonymous_variant | 0.73 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.73 |
rpoC | 764381 | c.1012_1013delTCinsAG | synonymous_variant | 0.73 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.75 |
rpoC | 764398 | c.1029G>A | synonymous_variant | 0.82 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.8 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.8 |
rpoC | 764428 | c.1059G>T | synonymous_variant | 0.67 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.6 |
rpoC | 764432 | p.Lys355Arg | missense_variant | 0.6 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 0.6 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.67 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.67 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.71 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.71 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.71 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 1.0 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 1.0 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 1.0 |
rpoC | 764506 | c.1137C>T | synonymous_variant | 1.0 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 1.0 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 1.0 |
rpoC | 764530 | c.1161C>T | synonymous_variant | 1.0 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 0.6 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.84 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.91 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.91 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.95 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.93 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.95 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 0.96 |
rpoC | 764722 | c.1353G>C | synonymous_variant | 0.83 |
rpoC | 764740 | p.Met457Ile | missense_variant | 0.67 |
rpoC | 764746 | c.1377G>C | synonymous_variant | 0.5 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.38 |
rpoC | 764912 | p.Met515Gln | missense_variant | 0.38 |
rpoC | 764917 | c.1548G>C | synonymous_variant | 0.43 |
rpoC | 764920 | c.1551G>C | synonymous_variant | 0.43 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.5 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.5 |
rpoC | 764948 | c.1579_1581delTTGinsCTC | synonymous_variant | 0.67 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.6 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.6 |
rpoC | 764958 | p.Glu530Ala | missense_variant | 0.6 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.67 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.5 |
rpoC | 767144 | p.Pro1259Thr | missense_variant | 0.4 |
mmpL5 | 777606 | p.Gly292Val | missense_variant | 0.67 |
fbiC | 1302783 | c.-148T>C | upstream_gene_variant | 0.67 |
fbiC | 1304952 | c.2022C>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471914 | n.69A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1471918 | n.73A>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1471925 | n.81delC | non_coding_transcript_exon_variant | 0.5 |
rrs | 1471931 | n.87delA | non_coding_transcript_exon_variant | 0.6 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1471938 | n.93T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1471943 | n.98T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472256 | n.411T>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472333 | n.488G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472507 | n.662C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472694 | n.849C>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472880 | n.1035G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472991 | n.1146G>A | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473089 | n.1244A>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473320 | n.1475G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1473828 | n.173_174delTG | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473834 | n.178_179insTAG | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473844 | n.187C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1473870 | n.213G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473871 | n.214T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473883 | n.226A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473887 | n.230T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473888 | n.231T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473890 | n.233T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1473899 | n.242A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474153 | n.496C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474155 | n.498G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474164 | n.507C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474166 | n.509G>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1474184 | n.527C>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474275 | n.618T>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474280 | n.623C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474348 | n.691C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474354 | n.697C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474359 | n.702C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474376 | n.719T>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474444 | n.787G>C | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474451 | n.794T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474454 | n.797G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474466 | n.809G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474717 | n.1060A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474736 | n.1079C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474743 | n.1086T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474751 | n.1094G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474770 | n.1113G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474794 | n.1137C>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474800 | n.1143T>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474830 | n.1173A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474832 | n.1175A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474935 | n.1278A>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474938 | n.1281G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475081 | n.1424C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475084 | n.1427G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475108 | n.1451C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475111 | n.1454G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475116 | n.1459G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475119 | n.1462C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475120 | n.1463G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475129 | n.1472G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475508 | n.1851A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475536 | n.1879C>A | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475538 | n.1881T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475548 | n.1891C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475549 | n.1892T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475550 | n.1893A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475649 | n.1992A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475692 | n.2035G>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476025 | n.2368G>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476032 | n.2375C>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476033 | n.2376T>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476034 | n.2377C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476045 | n.2388G>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476046 | n.2389G>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476047 | n.2390G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476056 | n.2399G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476076 | n.2419A>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476079 | n.2422G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476080 | n.2423T>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476081 | n.2424A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476082 | n.2425T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476087 | n.2430C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476088 | n.2431A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476099 | n.2442A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476104 | n.2448delG | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476540 | n.2883C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476544 | n.2887T>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476566 | n.2909A>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476596 | n.2939C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476601 | n.2944G>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476628 | n.2971T>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476630 | n.2973A>T | non_coding_transcript_exon_variant | 0.93 |
rpsA | 1833685 | c.144G>C | synonymous_variant | 0.67 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.62 |
rpsA | 1833704 | p.Ile55Val | missense_variant | 0.62 |
rpsA | 1833709 | c.168C>T | synonymous_variant | 0.78 |
rpsA | 1833721 | c.180A>G | synonymous_variant | 0.7 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.8 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.8 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.8 |
rpsA | 1833745 | c.204G>T | synonymous_variant | 0.78 |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.8 |
rpsA | 1833753 | p.Lys71Arg | missense_variant | 0.7 |
rpsA | 1833781 | c.240T>C | synonymous_variant | 0.86 |
rpsA | 1833782 | p.Ser81Lys | missense_variant | 0.86 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 1.0 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 1.0 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 1.0 |
rpsA | 1833814 | c.273C>T | synonymous_variant | 0.8 |
rpsA | 1833815 | p.Thr92Gln | missense_variant | 0.8 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.8 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 1.0 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 1.0 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 1.0 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 1.0 |
rpsA | 1833859 | c.318C>T | synonymous_variant | 0.67 |
rpsA | 1834034 | p.Ile165Leu | missense_variant | 0.6 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.78 |
rpsA | 1834061 | p.Ile174Leu | missense_variant | 0.78 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.78 |
rpsA | 1834090 | c.549G>C | synonymous_variant | 0.78 |
rpsA | 1834096 | c.555G>C | synonymous_variant | 0.78 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.78 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.78 |
rpsA | 1834109 | p.Trp190Leu | missense_variant | 0.78 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.78 |
rpsA | 1834123 | c.582C>G | synonymous_variant | 0.78 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2222854 | p.Ile104Thr | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066235 | c.-44C>A | upstream_gene_variant | 0.5 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
clpC1 | 4038842 | c.1863G>C | synonymous_variant | 0.75 |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.67 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.75 |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.75 |
clpC1 | 4039889 | c.816G>T | synonymous_variant | 0.67 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.75 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.78 |
clpC1 | 4039907 | c.798G>A | synonymous_variant | 0.22 |
clpC1 | 4039925 | c.780C>T | synonymous_variant | 0.22 |
clpC1 | 4039929 | c.775_776delAGinsTC | synonymous_variant | 0.62 |
clpC1 | 4039934 | c.771G>C | synonymous_variant | 0.75 |
clpC1 | 4039937 | p.Val256Ile | missense_variant | 0.62 |
clpC1 | 4039946 | c.759A>C | synonymous_variant | 0.83 |
clpC1 | 4039949 | c.756G>C | synonymous_variant | 0.83 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.83 |
clpC1 | 4039955 | c.750G>C | synonymous_variant | 0.86 |
clpC1 | 4039960 | p.Thr249Ser | missense_variant | 0.89 |
clpC1 | 4039966 | p.Leu247Val | missense_variant | 0.89 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.9 |
clpC1 | 4039991 | c.714G>C | synonymous_variant | 1.0 |
clpC1 | 4039994 | p.Glu237Asp | missense_variant | 0.57 |
clpC1 | 4039998 | p.Gly236Asn | missense_variant | 0.67 |
clpC1 | 4040000 | p.His235Lys | missense_variant | 0.67 |
clpC1 | 4040009 | c.696C>G | synonymous_variant | 0.67 |
clpC1 | 4040018 | c.687G>C | synonymous_variant | 0.5 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.5 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.5 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.64 |
clpC1 | 4040063 | c.642G>C | synonymous_variant | 0.73 |
clpC1 | 4040066 | c.639G>C | synonymous_variant | 0.73 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 0.67 |
clpC1 | 4040081 | p.Thr208Ser | missense_variant | 0.67 |
clpC1 | 4040087 | c.618G>C | synonymous_variant | 0.67 |
clpC1 | 4040090 | c.615T>G | synonymous_variant | 0.71 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.71 |
clpC1 | 4040096 | p.Val203Ile | missense_variant | 0.71 |
clpC1 | 4040105 | c.600C>G | synonymous_variant | 0.71 |
clpC1 | 4040108 | c.597G>C | synonymous_variant | 0.71 |
clpC1 | 4040117 | c.588A>G | synonymous_variant | 0.71 |
clpC1 | 4040129 | c.576C>G | synonymous_variant | 0.75 |
clpC1 | 4040138 | c.567G>C | synonymous_variant | 0.67 |
clpC1 | 4040166 | p.Ala180Val | missense_variant | 0.67 |
clpC1 | 4040333 | c.372G>C | synonymous_variant | 0.62 |
clpC1 | 4040342 | c.363C>G | synonymous_variant | 0.67 |
clpC1 | 4040348 | c.357G>C | synonymous_variant | 0.7 |
clpC1 | 4040354 | c.351A>G | synonymous_variant | 0.67 |
clpC1 | 4040357 | c.348T>C | synonymous_variant | 0.75 |
clpC1 | 4040363 | c.342A>C | synonymous_variant | 0.75 |
clpC1 | 4040375 | c.330G>C | synonymous_variant | 0.75 |
clpC1 | 4040380 | c.325T>C | synonymous_variant | 0.86 |
clpC1 | 4040381 | c.324T>C | synonymous_variant | 0.86 |
clpC1 | 4040387 | c.318A>G | synonymous_variant | 0.86 |
clpC1 | 4040393 | c.312G>C | synonymous_variant | 0.86 |
clpC1 | 4040411 | c.294T>G | synonymous_variant | 0.75 |
clpC1 | 4040432 | c.271_273delAGCinsTCG | synonymous_variant | 0.67 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4246453 | p.Val1074Asp | missense_variant | 0.67 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |