EBG00000313339 - n.2341C>T


Drug resistance types
15 Sensitive 68 RR-TB 16 HR-TB 71 MDR-TB 31 Pre-XDR-TB 1 XDR-TB 226 Other
lineage Counts
lineage Count
lineage3.1.2.1 1
lineage3 32
lineage4.9 78
12
lineage4.3.4.2 5
lineage2.2.1 69
lineage4.1.2 4
lineage4.3.2 4
lineage4;lineage3 1
lineage4.3.3 14
lineage4.1.1.3.1 2
lineage4.1.2.1 20
lineage1.1.1 4
lineage1.2.2.2 4
lineage4.3.4.1 5
lineage4.1.1.3 14
lineage4.8 21
lineage4.6.2.2 4
La3 1
lineage3.1.1 6
lineage6.1.3 1
lineage4.7 5
lineage4.2.2.2 3
lineage1.1.3.1 2
lineage4.8.2 2
lineage3.1.3 1
lineage4.2.1 5
lineage4.3.4.2.1 6
lineage4.1.1 4
lineage4 13
lineage4.4 1
lineage4.2.2.2;lineage3 1
lineage4.8.1 3
lineage3.1.2.2 2
lineage3.1.2 1
lineage4.3.1.1 2
lineage4.4.1.1 7
lineage1.1.2 2
lineage4.6.5 1
lineage4.2.1.1 1
La1.8.1 12
lineage5.1.1 1
lineage4.3 2
lineage4.6.1.1 1
lineage2.2.2 5
lineage4.9.1 1
lineage4.9;lineage1.1 1
lineage4.9;lineage4.1 1
lineage4.6 2
lineage4.3.4 2
lineage4.4.1.2 1
lineage6.2.3;lineage1.1.2 1
lineage1.1.1.1 1
lineage4.1.1.2 1
lineage2.2.1.1 4
lineage4.8;lineage4.3.3 4
lineage4.4.1.1;lineage4.1.2.1 1
La1.6 1
lineage4.3.2.1 1
lineage4.4.2 4
lineage2 1
lineage2.2.2;lineage2.2.1 1
lineage2.2 3
lineage4.2.2 1
lineage4.5 1
La1.7.1 3
lineage6 1
lineage4.9;lineage3.1.1 1
lineage4.1 1
lineage1.2.1.1 1
lineage4.8;lineage4.2.1.1 1
lineage3.1 1
lineage4.2.2.1 1
spoligotype Counts
spoligotype Count
None 428
Geographic prevalence
Country level data for this variant is available for 28 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4816717 RR-TB lineage3.1.2.1 None
ERR4818663 Other lineage3 None
ERR2229791 RR-TB lineage4.9 None
SRR5818386 Other None
ERR4817915 RR-TB lineage4.9 None
SAMN02380982 MDR-TB lineage4.3.4.2 None
ERR2513405 Other lineage2.2.1 None
ERR4818232 Other lineage4.1.2 gb
ERR4819017 RR-TB lineage3 None
SRR5007165 MDR-TB lineage3 None
ERR4818272 Other lineage4.3.2 None
SRR5007163 MDR-TB lineage4;lineage3 None
ERR4819041 Sensitive lineage4.3.3 gb
SRR5007161 RR-TB lineage4.1.1.3.1 None
SRR5818458 Other None
SRR5007168 RR-TB lineage4.9 None
SRR5007170 RR-TB lineage4.9 None
SRR5007204 Other lineage4.1.2.1 None
SRR5067597 Other lineage1.1.1 vn
SRR5074710 Sensitive lineage4.3.3 None
ERR4819171 Sensitive lineage1.2.2.2 gb
ERR4820503 Other lineage2.2.1 None
ERR4819265 HR-TB lineage4.3.4.1 None
ERR4819383 RR-TB lineage4.9 None
ERR4820891 Other lineage4.9 gb
ERR4819175 Other lineage4.1.1.3 gb
ERR4819206 Other lineage4.8 None
ERR4820492 Other lineage2.2.1 None
ERR4820030 Other lineage4.9 None
ERR4819863 RR-TB lineage4.9 None
SRR6045464 Other lineage4.1.1.3 None
ERR4820846 RR-TB lineage4.6.2.2 gb
ERR4820652 Other lineage1.1.1 gb
ERR4821769 Other lineage4.1.2.1 None
ERR4821802 Other La3 gb
SRR6046087 Other None
ERR4821172 RR-TB lineage4.9 None
SRR6045516 Other lineage3.1.1 None
SRR6045496 Other lineage6.1.3 None
SRR6045553 RR-TB lineage4.9 None
SRR6046117 RR-TB lineage4.9 None
ERR4821272 RR-TB lineage4.1.2.1 None
ERR4821276 Other lineage3 None
ERR4821288 Other lineage4.7 None
ERR4821962 Other lineage4.1.1.3 gb
ERR4822138 Other lineage4.1.2.1 None
ERR4821718 Other lineage4.2.2.2 gb
ERR4821616 Other lineage1.1.3.1 None
ERR4821519 Other lineage3 gb
SRR6046113 Other lineage4.1.1.3 None
SRR6045565 Other lineage4.6.2.2 None
ERR4821725 Other lineage4.8.2 gb
SRR6045613 Other lineage3.1.3 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR5818394 Other lineage4.9 None
SRR6045621 Other lineage4.1.1.3 None
SRR6045664 Other lineage4.2.1 None
SRR5818385 Other lineage4.9 None
SRR6045614 Other lineage4.8 None
SRR5818397 Other lineage4.9 None
SRR5818395 Sensitive lineage4.9 None
SRR5818391 Other lineage4.9 None
SRR5818398 Other lineage4.9 None
SRR5818388 Other lineage4.9 None
SRR5818425 Other lineage4.9 None
SRR5818389 Other lineage4.9 None
SRR5818414 Other lineage4.9 None
SRR5818423 MDR-TB lineage4.9 None
SRR5818432 MDR-TB lineage4.9 None
SRR5818446 Other lineage4.9 None
SRR5818448 Other lineage4.9 None
SRR5818408 Other lineage4.9 None
SRR5818460 Other lineage4.9 None
SRR5818452 Other lineage4.9 None
SRR5818459 Other lineage4.9 None
SRR5818449 MDR-TB lineage4.9 None
SRR5818464 Other lineage4.9 None
SRR5818470 Other lineage4.9 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR6045749 Other lineage4.1.1 gb
SRR6046210 Other lineage4 None
SRR6044787 Other lineage4.4 None
SRR6045843 Other lineage4.2.2.2 None
SRR6045876 Other lineage3 gb
SRR6044774 Other lineage3 None
SRR5818694 RR-TB lineage4.2.2.2;lineage3 None
SRR6045928 Other lineage4.9 None
SRR6045909 Other lineage4.8 None
SRR6044838 Other lineage4.9 None
SRR6044841 Other lineage4.9 None
SRR6044857 Other lineage4.8.1 gb
SRR6044873 Other lineage4.1.1.3.1 None
SRR6045957 Other lineage4.9 None
SRR6045944 Other lineage4.1.2.1 None
SRR6044957 Other lineage4.8.2 None
SRR6044952 RR-TB lineage4.9 None
SRR6045986 Other lineage3 None
SRR6044983 Other lineage3.1.1 None
SRR6044993 Other lineage3 None
SRR6045002 MDR-TB lineage4.9 None
SRR6045017 Other lineage3.1.2.2 None
SRR6046177 Other lineage3.1.2 None
SRR6045138 Other lineage3.1.1 None
SRR6046173 Other lineage3 None
SRR6046250 Other lineage4.9 None
SRR6046020 Other lineage3 None
SRR6045267 RR-TB lineage4 None
SRR6045178 Other lineage3 None
SRR6045325 Other lineage4.8.1 gb
SRR6045384 Other lineage4.1.2 None
SRR6045396 Other lineage4.3.1.1 None
SRR6046359 Other lineage4.7 None
SRR6046275 Other lineage3.1.1 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046343 Other lineage2.2.1 None
ERR4830194 HR-TB lineage1.1.1 vn
SRR6046484 Other lineage1.2.2.2 None
SRR6046442 Other lineage3 None
SRR6046482 HR-TB None
SRR6046733 Pre-XDR-TB lineage2.2.1 None
SRR6046497 Other lineage4.9 None
SRR6046521 Other lineage4.4.1.1 None
SRR6046534 Other lineage1.1.2 None
SRR6046668 Sensitive lineage1.1.2 gb
SRR6046729 Other None
SRR6046779 Other lineage4.1.2.1 gb
SRR6046852 MDR-TB lineage3 None
SRR6046802 Other lineage4 None
SRR6046848 Other lineage4.6.5 None
SRR6046815 Other lineage3 None
ERR502474 Pre-XDR-TB lineage4.9 None
ERR502470 RR-TB lineage4.9 None
ERR502473 Pre-XDR-TB lineage4.9 None
SRR6824501 Pre-XDR-TB lineage2.2.1 None
ERR502478 RR-TB lineage4.9 None
ERR4972567 MDR-TB lineage4.3.2 None
SRR6785281 Other lineage4.2.1.1 None
ERR502479 RR-TB lineage4.9 None
ERR502481 Pre-XDR-TB lineage4.9 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR6982141 RR-TB lineage4.3.3 None
ERR5311077 RR-TB La1.8.1 None
ERR3014599 Pre-XDR-TB lineage4.1.2.1 tn
ERR5087846 Other La1.8.1 None
ERR502517 MDR-TB lineage5.1.1 None
ERR3275941 RR-TB lineage4.3 nl
ERR5087596 Other La1.8.1 None
SRR7131068 Other lineage4.8 None
SRR7131061 Other lineage2.2.1 None
SRR7131161 Other lineage4.8 None
SRR7131098 MDR-TB lineage4.3.3 None
SRR7131147 Other lineage4.1.2.1 None
SRR7131123 Other lineage4.8 None
SRR7131145 Other lineage4.1.2.1 None
SRR7131233 MDR-TB lineage4.3.3 None
SRR7131182 Other lineage4.1.2.1 None
SRR7131195 Other lineage2.2.1 None
SRR7131230 HR-TB lineage4.3.4.2 None
SRR7131234 Other lineage4.9 None
SRR7131216 Other lineage4.1.2.1 None
SRR9971372 MDR-TB lineage4.1.1 None
SRR7131236 Other lineage4.3.4.2 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7585435 Other lineage4.9 None
SRR7535047 RR-TB lineage4.6.1.1 None
DRR184629 Other lineage2.2.1 None
SRR1735641 Sensitive lineage2.2.1 gb
SRR9971122 MDR-TB lineage4.8 None
SRR7765062 Pre-XDR-TB lineage4.1.2.1 None
DRR184932 Other lineage2.2.1 None
DRR185024 Other lineage2.2.2 None
DRR184982 RR-TB lineage2.2.1 None
ERR036207 Other lineage4.9 None
ERR10219876 Other lineage4.3.4.2 None
ERR037504 Other lineage4.9.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR10762275 MDR-TB lineage4.2.1 None
ERR10762248 MDR-TB lineage4.2.1 None
ERR10796564 Other lineage4.3.3 None
ERR10762495 MDR-TB lineage2.2.1 None
ERR10796561 Other lineage4.3.2 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796553 Other lineage4.9;lineage1.1 None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796565 RR-TB lineage4.9 None
ERR10796576 RR-TB lineage4.9 None
ERR10796571 Other lineage4.9 None
ERR10796581 HR-TB lineage4.1.2 None
ERR10796577 RR-TB lineage4.9 None
ERR10796580 RR-TB lineage4.6 None
ERR10796598 RR-TB lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR10796589 Other lineage4.9 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796592 Other lineage4 None
ERR10796593 RR-TB lineage4 None
ERR10796620 Other lineage4.1.1 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796628 Other lineage4.3.3 None
ERR10796626 Other lineage4.1.2 None
ERR10796631 Other lineage4.3.4 None
ERR10796629 Other lineage4 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR10796633 RR-TB lineage4.3.4 None
ERR10796636 Other lineage4.1.2.1 None
ERR10796632 Other lineage4.3.3 None
ERR10796634 Other lineage4 None
ERR3439265 Other lineage4.9 None
ERR3283006 RR-TB lineage4.9 None
ERR3324368 RR-TB lineage6.2.3;lineage1.1.2 None
ERR3439489 RR-TB La1.8.1 None
ERR4769554 RR-TB lineage4.9 None
ERR3468488 RR-TB La1.8.1 None
ERR3468613 RR-TB La1.8.1 None
ERR3468776 Other La1.8.1 None
ERR3797062 RR-TB lineage4.9 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR6197042 RR-TB lineage4.9 None
ERR6197034 Other lineage4.9 None
ERR5979407 Other lineage3 None
ERR5979454 Pre-XDR-TB lineage3 None
ERR7764340 Sensitive lineage4.7 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR8774355 MDR-TB lineage2.2.1 None
ERR8975044 Other lineage4.1.1.2 None
ERR9117747 HR-TB lineage4.8 None
ERR9117678 Other lineage4.6.2.2 None
ERR9117732 Other lineage1.2.2.2 None
ERR9117699 Other lineage4.1.2.1 None
ERR9117759 Other lineage3 None
ERR9117760 HR-TB lineage4.3 None
ERR9117799 Sensitive lineage4.8 None
ERR9119299 HR-TB lineage1.1.1 None
ERR9117805 Other lineage4.3.2 None
ERR9117812 Other lineage4.3.1.1 None
ERR9117822 Sensitive lineage4.1.2.1 None
ERR970449 RR-TB lineage4.1.1.3 None
SRR10315465 MDR-TB lineage4.4.1.1 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR987707 MDR-TB lineage4.7 None
ERR9992879 XDR-TB lineage4.3.3 None
SRR10303325 MDR-TB lineage2.2.1 None
ERR983238 MDR-TB lineage2.2.1.1 None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR10430377 MDR-TB lineage2.2.1 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1049672 Other lineage3 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR11342643 MDR-TB lineage4.1.1 None
SRR1062918 Pre-XDR-TB lineage3 None
SRR10993951 RR-TB La1.6 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
SRR1062928 RR-TB lineage4 None
SRR11342648 MDR-TB lineage4.1.1.3 None
SRR11349187 Pre-XDR-TB lineage4.8.1 None
SRR11342688 Other lineage4.2.2.2 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR11349201 MDR-TB lineage4.1.1.3 None
SRR11349207 RR-TB lineage2.2.1 None
SRR11349203 MDR-TB lineage4.4.1.1 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR1140716 Pre-XDR-TB lineage3 None
SRR1140736 RR-TB None
SRR1173740 Other None
SRR1173185 HR-TB lineage4.9 None
SRR1173281 RR-TB lineage3 None
SRR1173170 Other lineage4.9 None
SRR1173310 MDR-TB None
SRR1173450 RR-TB lineage4.9 None
SRR1173719 HR-TB lineage3 None
SRR1175473 Other lineage4.9 None
SRR1173770 Other lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1175472 MDR-TB lineage4 None
SRR1175491 MDR-TB lineage4 None
SRR13423546 Other lineage4.4.2 None
SRR1180446 Other lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR1184329 MDR-TB lineage4.9 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR12199485 Other lineage2 None
SRR1735596 RR-TB lineage4.9 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR15316595 RR-TB lineage4.4.2 None
SRR15508556 Other lineage4.3.4.1 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR16156751 RR-TB lineage4.9 None
SRR16156832 RR-TB None
SRR1792024 Other La1.8.1 None
SRR1735585 Sensitive lineage3 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR1792012 Other La1.8.1 None
SRR1792011 Other La1.8.1 None
SRR1792022 Other La1.8.1 None
SRR1792025 Other La1.8.1 None
SRR18002876 MDR-TB lineage2.2.2;lineage2.2.1 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002909 MDR-TB lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18002887 MDR-TB lineage2.2.1.1 None
SRR18002926 Other lineage2.2.1 None
SRR18002933 Other lineage2.2.1 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002948 Other lineage2.2 None
SRR18002937 Other lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18002956 HR-TB lineage2.2.1 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18002964 Other lineage2.2.1 None
SRR18002967 Pre-XDR-TB lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002980 Other lineage2.2.1 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR18002987 Other lineage2.2.1 None
SRR18002997 Other lineage2.2.1 None
SRR18002995 Other lineage4.4.2 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003007 MDR-TB lineage4.5 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR18003027 Other lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003033 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR18003044 MDR-TB lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18003045 Other lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18213721 Other lineage4.8 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18003052 Other lineage2.2.1.1 None
SRR18213736 MDR-TB lineage3 None
SRR19303784 Other lineage4.2.1 None
SRR19303796 Other lineage4.3.3 None
SRR19303820 RR-TB lineage4.8 None
SRR19303805 Other lineage4.8 None
SRR19303815 Other lineage4.8 None
SRR19303818 Other lineage4.3.4.2 None
SRR19303907 Other lineage4.8 None
SRR19303817 Other lineage2.2.1 None
SRR19303819 Other lineage4.6.2.2 None
SRR19303899 Other lineage3 None
SRR19303917 Other lineage2.2.1 None
SRR21469201 Other La1.7.1 None
SRR19303985 Other lineage4.8 None
SRR19304035 Other lineage4.1.2.1 None
SRR19304083 Other lineage4.4.1.1 None
SRR19304094 Other lineage6 None
SRR19304104 Other lineage4.8 None
SRR19304115 Other lineage4.1.2.1 None
SRR22048474 RR-TB lineage4.8 None
SRR21469200 Other La1.7.1 None
SRR21469202 Other La1.7.1 None
SRR21727760 Other lineage2.2.1 None
SRR21728727 Sensitive lineage1.2.2.2 None
SRR22424778 RR-TB lineage2.2.1.1 None
SRR22048536 Other lineage4.3.3 None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
SRR22048550 Other lineage1.1.3.1 None
SRR3601585 Pre-XDR-TB lineage2.2 None
SRR22424851 MDR-TB lineage4.3.3 None
ERR4815278 Other lineage4.8 None
SRR3619764 Pre-XDR-TB lineage2.2 None
SRR3675496 Other lineage4.1.1.3 gb
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR4815711 Sensitive lineage3 None
ERR1750907 RR-TB None
ERR171142 Other lineage4.9;lineage3.1.1 None
ERR4819579 HR-TB lineage4.3.3 None
ERR1750908 Sensitive lineage4 None
SRR3675245 Other lineage4.1.2.1 None
ERR4815502 Other lineage4.1 None
ERR1750943 Sensitive lineage4 None
SRR3675265 Other lineage4 None
ERR4814905 Other lineage4.8 gb
SRR3675282 Other None
SRR3675288 Other lineage3 None
SRR3675291 Sensitive lineage4.6 gb
SRR3675509 Other lineage4.9 None
ERR4815556 RR-TB lineage3 None
SRR3675513 Other lineage4.8 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR3675527 RR-TB lineage4.9 None
ERR2027255 HR-TB lineage4.4.1.1 None
SRR3675547 Other lineage4.9 None
ERR2027252 Other lineage4.8;lineage4.2.1.1 None
ERR2027257 Other lineage4.1.2.1 None
ERR2027290 RR-TB lineage3.1 None
ERR4816464 Other lineage3 None
ERR4817047 Other lineage4.2.2.1 gb
SRR3675565 Other lineage3 None
ERR212114 Other lineage4.3.4.2.1 None
ERR4817069 RR-TB None
ERR4817110 Other lineage4.1.1.3 None
ERR2229760 Other lineage4.8 dk
ERR4817398 Other lineage3.1.1 None
ERR4817189 Other lineage4.7 None