EBG00000313339 - n.2341C>T
Drug resistance types
2 Sensitive
37 RR-TB
10 HR-TB
56 MDR-TB
24 Pre-XDR-TB
1 XDR-TB
146 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 62 |
| lineage4.3.4.2.1 | 6 |
| lineage4.1.2.1 | 10 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage3 | 13 |
| La1.6 | 1 |
| lineage4.9 | 57 |
| lineage1.1.1 | 7 |
| lineage4.3.4.2 | 2 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.3.3 | 8 |
| La1.8.1 | 8 |
| lineage4.8 | 14 |
| La1.7.1 | 3 |
| lineage4.7 | 3 |
| lineage4.1.1.1 | 4 |
| lineage4.3 | 1 |
| lineage3.1.3 | 1 |
| lineage4.2.2.2 | 3 |
| lineage3.1.2 | 1 |
| lineage4.2.1 | 4 |
| lineage4.4.1.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage2.2.2 | 5 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.3 | 9 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.3.4.1 | 3 |
| lineage3.1.1 | 4 |
| lineage4.8.1 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.2 | 3 |
| lineage4.5 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4 | 1 |
| lineage2.2;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage1.1.1.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 276 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7068912 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1181403 | Other | lineage4.9 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR26399962 | HR-TB | lineage1.1.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR5818395 | Sensitive | lineage4.9 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR1792025 | Other | La1.8.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR21469200 | Other | La1.7.1 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | ERR10796634 | Other | lineage4.7 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR867569 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR6045613 | Other | lineage3.1.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR5067597 | Other | lineage1.1.1 | vn | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR3014599 | Pre-XDR-TB | lineage4.1.2.1 | tn | SRR6046177 | Other | lineage3.1.2 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1792024 | Other | La1.8.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR1184329 | Other | lineage4.9 | None | SRR7068885 | Other | lineage3 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1792022 | Other | La1.8.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR22249916 | Other | lineage1.1.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | SRR1792012 | Other | La1.8.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR7070144 | Other | lineage4.8 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR6044952 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR6045909 | Other | lineage4.8.1 | None | ERR867544 | Other | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR5818459 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR5818414 | Other | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6046815 | Other | lineage3 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR18002933 | Other | lineage2.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR29126228 | Sensitive | lineage1.1.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR7070293 | Other | lineage4.8 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR3675509 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR9117759 | Other | lineage3 | None | ERR3468488 | Other | La1.8.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | SRR1175473 | Other | lineage4.9 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR5818398 | Other | lineage4.9 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR1792011 | Other | La1.8.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR19303899 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR5818388 | Other | lineage4.9 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | DRR184982 | Other | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399549 | HR-TB | lineage1.1.1 | None | SRR7069518 | Other | lineage4.8 | None | SRR18003038 | Other | lineage2.2.1 | None | ERR867575 | Other | lineage4.9 | None | SRR7069946 | Other | lineage4.8 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR18002963 | Other | lineage2.2.1 | None | ERR867574 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR3675389 | Other | lineage4.9 | None | SRR5818386 | Other | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6046020 | Other | lineage3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR19304104 | Other | lineage4.8 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR3468613 | Other | La1.8.1 | None | SRR21469201 | Other | La1.7.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR3675582 | Other | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | ERR867572 | Other | lineage4.9 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4.9 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR5311077 | Other | La1.8.1 | None | SRR19303815 | Other | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1173185 | Other | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR6045384 | Other | lineage4.1.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR5818452 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR1181256 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4830194 | HR-TB | lineage1.1.1 | vn | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR6045986 | Other | lineage3 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1140716 | Other | lineage3 | None | SRR1173170 | Other | lineage4.9 | None | ERR10796560 | Other | lineage4.9 | None | ERR9119299 | HR-TB | lineage1.1.1 | None |
|---|
