TB-Profiler result

Run: ERR3468613
Summary

Run ID: ERR3468613

Sample name:

Date: 01-04-2023 02:19:23

Number of reads: 786141

Percentage reads mapped: 67.89

Strain: La1.8.1

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
La1 M.bovis None None 1.0
La1.8 M.bovis None None 1.0
La1.8.1 M.bovis None None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761098 p.Ser431Thr missense_variant 0.11 rifampicin
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.66 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.71 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.54 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5752 c.513G>A synonymous_variant 1.0
gyrA 6406 c.-896C>T upstream_gene_variant 1.0
gyrB 6446 p.Ala403Ser missense_variant 1.0
gyrA 7325 c.24T>A synonymous_variant 0.12
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8285 c.984C>T synonymous_variant 1.0
gyrA 8741 c.1440C>T synonymous_variant 1.0
gyrA 8899 p.Leu533Pro missense_variant 0.12
gyrA 9143 c.1842T>C synonymous_variant 1.0
gyrA 9217 p.Asp639Ala missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 0.11
rpoB 761036 c.1230G>C synonymous_variant 0.11
rpoB 761037 c.1231T>C synonymous_variant 0.11
rpoB 761051 c.1245G>C synonymous_variant 0.11
rpoB 761066 c.1260G>C synonymous_variant 0.12
rpoB 761102 c.1296A>G synonymous_variant 0.11
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763528 c.159G>C synonymous_variant 0.14
rpoC 763531 c.162G>T synonymous_variant 0.15
rpoC 763532 p.Thr55Ser missense_variant 0.15
rpoC 763546 c.177A>G synonymous_variant 0.15
rpoC 763570 c.201G>C synonymous_variant 0.26
rpoC 763573 c.204G>A synonymous_variant 0.25
rpoC 763600 c.231C>G synonymous_variant 0.35
rpoC 763603 c.234C>T synonymous_variant 0.35
rpoC 763609 c.240C>T synonymous_variant 0.39
rpoC 763615 c.246G>C synonymous_variant 0.33
rpoC 763624 c.255C>A synonymous_variant 0.37
rpoC 763630 c.261G>C synonymous_variant 0.42
rpoC 763633 c.264T>C synonymous_variant 0.42
rpoC 763642 c.273G>C synonymous_variant 0.42
rpoC 763660 c.291T>G synonymous_variant 0.32
rpoC 763666 c.297G>C synonymous_variant 0.33
rpoC 763669 c.300C>G synonymous_variant 0.32
rpoC 763675 c.306C>G synonymous_variant 0.3
rpoC 763699 c.330G>T synonymous_variant 0.24
rpoC 763702 c.333C>G synonymous_variant 0.17
rpoC 763705 c.336G>C synonymous_variant 0.17
rpoC 763708 c.339G>C synonymous_variant 0.18
rpoC 763714 c.345G>C synonymous_variant 0.19
rpoC 763717 c.348T>C synonymous_variant 0.17
rpoC 763720 c.351G>T synonymous_variant 0.16
rpoC 763723 c.354G>T synonymous_variant 0.18
rpoC 763732 c.363C>G synonymous_variant 0.18
rpoC 763744 c.375G>T synonymous_variant 0.17
rpoC 763747 c.378G>A synonymous_variant 0.17
rpoC 763751 p.Ile128Val missense_variant 0.16
rpoC 764527 c.1158C>T synonymous_variant 0.12
rpoC 764536 c.1167G>T synonymous_variant 0.18
rpoC 764539 c.1170C>G synonymous_variant 0.16
rpoC 764548 c.1179G>T synonymous_variant 0.17
rpoC 764566 c.1197C>G synonymous_variant 0.14
rpoC 764572 c.1203G>C synonymous_variant 0.12
rpoC 764575 c.1206T>G synonymous_variant 0.12
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.12
rpoC 764581 c.1212T>C synonymous_variant 0.12
rpoC 764582 p.Leu405Met missense_variant 0.12
rpoC 764662 c.1293G>C synonymous_variant 0.12
rpoC 764668 c.1299C>T synonymous_variant 0.12
rpoC 764722 c.1353G>C synonymous_variant 0.16
rpoC 764746 c.1377G>C synonymous_variant 0.17
rpoC 764752 c.1383G>T synonymous_variant 0.19
rpoC 764767 c.1398G>A synonymous_variant 0.2
rpoC 764779 c.1410G>A synonymous_variant 0.17
rpoC 764780 c.1411_1413delAGCinsTCG synonymous_variant 0.19
rpoC 764803 c.1434C>T synonymous_variant 0.14
rpoC 764804 p.Gln479Tyr missense_variant 0.14
rpoC 764809 c.1440C>T synonymous_variant 0.14
rpoC 764812 c.1443C>G synonymous_variant 0.14
rpoC 764815 c.1446A>G synonymous_variant 0.14
rpoC 764818 c.1449G>C synonymous_variant 0.15
rpoC 764824 c.1455T>C synonymous_variant 0.16
rpoC 764837 p.Val490Ile missense_variant 0.15
rpoC 764843 p.Ala492Thr missense_variant 0.17
rpoC 764848 c.1479G>A synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rplC 800630 c.-179G>T upstream_gene_variant 0.14
rplC 800633 c.-176T>C upstream_gene_variant 0.14
rplC 800639 c.-170C>A upstream_gene_variant 0.14
rplC 800648 c.-161A>T upstream_gene_variant 0.14
rplC 800654 c.-155T>C upstream_gene_variant 0.13
rplC 800668 c.-141_-140delCGinsGC upstream_gene_variant 0.13
rplC 800681 c.-128C>T upstream_gene_variant 0.14
rplC 800684 c.-125G>A upstream_gene_variant 0.14
rplC 800693 c.-116A>G upstream_gene_variant 0.14
rplC 800702 c.-107G>T upstream_gene_variant 0.17
rplC 800703 c.-106_-104delTTGinsCTT upstream_gene_variant 0.17
rplC 800729 c.-80G>C upstream_gene_variant 0.14
rplC 800733 c.-76A>G upstream_gene_variant 0.14
rplC 800762 c.-47T>G upstream_gene_variant 0.13
fbiC 1302899 c.-32A>G upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.2
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.18
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.18
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.18
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.18
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.53
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.5
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.43
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 0.27
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.42
rrs 1472495 n.650C>A non_coding_transcript_exon_variant 0.42
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.46
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.67
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.59
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.53
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.57
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.67
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.64
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.68
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.64
rrs 1472674 n.829T>G non_coding_transcript_exon_variant 0.64
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.64
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.64
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.64
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.67
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.58
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.62
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.57
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.54
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.54
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.61
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.58
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.58
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.58
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.58
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.58
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.67
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.64
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.63
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.63
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.66
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.7
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.7
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.7
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.72
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.74
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.74
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.72
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.72
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.73
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.77
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.78
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.69
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.68
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.64
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.54
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.54
rrl 1474012 n.355C>A non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>C non_coding_transcript_exon_variant 0.38
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.31
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.33
rrl 1474286 n.629C>A non_coding_transcript_exon_variant 0.27
rrl 1474287 n.630T>G non_coding_transcript_exon_variant 0.27
rrl 1474296 n.640_654delCTCCGGAGGAGGGTG non_coding_transcript_exon_variant 0.33
rrl 1474316 n.659T>C non_coding_transcript_exon_variant 0.3
rrl 1474348 n.691C>T non_coding_transcript_exon_variant 0.27
rrl 1474351 n.694G>T non_coding_transcript_exon_variant 0.27
rrl 1474353 n.696A>T non_coding_transcript_exon_variant 0.3
rrl 1474354 n.697C>T non_coding_transcript_exon_variant 0.27
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.27
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.4
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 0.44
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.38
rrl 1474450 n.793T>A non_coding_transcript_exon_variant 0.33
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.43
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 0.53
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.58
rrl 1474496 n.839C>A non_coding_transcript_exon_variant 0.58
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.58
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.55
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.52
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.52
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.52
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.52
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.5
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.5
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.5
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 0.74
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.67
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.73
rrl 1474664 n.1007G>A non_coding_transcript_exon_variant 0.71
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 0.86
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.6
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.6
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.5
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 0.5
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.54
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.54
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.58
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.58
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.58
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.71
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 0.72
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.72
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.72
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.72
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.76
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.7
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.68
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.68
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.73
rrl 1474869 n.1212G>A non_coding_transcript_exon_variant 0.73
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.58
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.55
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.5
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.43
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.71
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.8
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.79
rrl 1475783 n.2126T>C non_coding_transcript_exon_variant 0.78
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.86
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.86
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.85
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.85
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.84
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.81
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.79
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.78
rrl 1475963 n.2306G>A non_coding_transcript_exon_variant 0.77
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.72
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.69
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.67
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.67
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.67
rrl 1475996 n.2339T>A non_coding_transcript_exon_variant 0.62
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.62
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.64
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.64
rrl 1476024 n.2367T>G non_coding_transcript_exon_variant 0.74
rrl 1476025 n.2368G>T non_coding_transcript_exon_variant 0.74
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.73
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.73
rrl 1476045 n.2388G>C non_coding_transcript_exon_variant 0.72
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.67
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.67
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.6
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.47
rrl 1476079 n.2422G>A non_coding_transcript_exon_variant 0.42
rrl 1476080 n.2423T>C non_coding_transcript_exon_variant 0.42
rrl 1476081 n.2424A>T non_coding_transcript_exon_variant 0.42
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.42
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.42
rrl 1476104 n.2447T>G non_coding_transcript_exon_variant 0.42
rrl 1476105 n.2448G>T non_coding_transcript_exon_variant 0.42
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.42
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.42
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.42
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.38
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.38
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.23
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.25
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.25
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.25
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.44
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.47
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.43
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.43
rrl 1476251 n.2594T>A non_coding_transcript_exon_variant 0.4
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.4
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.4
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.4
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.4
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.47
rrl 1476308 n.2651G>T non_coding_transcript_exon_variant 0.29
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.31
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.33
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.65
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.71
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.66
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.66
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.74
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.64
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.61
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.56
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.56
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.56
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.56
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.56
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.56
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.56
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.56
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.62
rpsA 1834000 c.459G>C synonymous_variant 0.11
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102193 p.Arg284Trp missense_variant 1.0
ndh 2103173 c.-132delG upstream_gene_variant 1.0
katG 2154422 p.Thr564Ala missense_variant 0.12
katG 2154724 p.Arg463Leu missense_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
katG 2156025 c.87C>A synonymous_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168011 p.Ser868Arg missense_variant 1.0
PPE35 2168319 p.Thr765Ile missense_variant 1.0
PPE35 2168814 c.1798dupA frameshift_variant 1.0
Rv1979c 2222308 p.Asp286Gly missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518132 c.18C>T synonymous_variant 1.0
eis 2715125 p.Thr70Ala missense_variant 1.0
ahpC 2726630 c.438C>T synonymous_variant 0.12
thyA 3073755 c.717C>T synonymous_variant 1.0
thyA 3074283 c.188delT frameshift_variant 0.14
ald 3086728 c.-92C>T upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
Rv3083 3448783 p.Val94Ile missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474427 p.Val141Ile missense_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
fbiA 3640801 p.His87Tyr missense_variant 0.13
rpoA 3878630 c.-124delC upstream_gene_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242680 p.Ala940Ser missense_variant 1.0
embA 4242970 c.-263C>T upstream_gene_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0
embB 4246551 p.Asn13Ser missense_variant 1.0
embB 4246864 c.351C>T synonymous_variant 1.0
embB 4247646 p.Glu378Ala missense_variant 1.0
embB 4249111 c.2598T>C synonymous_variant 0.14
aftB 4267858 p.Ile327Val missense_variant 1.0
aftB 4269351 c.-515C>T upstream_gene_variant 1.0
ubiA 4269387 p.Glu149Asp missense_variant 1.0
aftB 4269606 c.-770T>C upstream_gene_variant 1.0
ethA 4327530 c.-57G>A upstream_gene_variant 0.97
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0