EBG00000313339 - n.2376T>C
Drug resistance types
24 Sensitive
9 RR-TB
155 HR-TB
33 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
116 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 28 |
| 142 | |
| lineage2.2.1 | 18 |
| lineage4.3.4.1 | 2 |
| lineage4.2.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage3 | 8 |
| La1.8.1 | 6 |
| La1.7.1 | 1 |
| lineage4.5 | 2 |
| lineage2.2 | 9 |
| lineage2 | 3 |
| lineage4.8 | 9 |
| lineage4.3.3 | 8 |
| lineage4.1 | 2 |
| lineage4.1.1 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage4.1.2.1 | 22 |
| lineage4 | 16 |
| lineage2.1 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.1.1.3 | 2 |
| lineage4.6.1.2 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.8;La3 | 1 |
| lineage1.1.2 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.6.4 | 2 |
| lineage1.1 | 1 |
| lineage5.2 | 2 |
| lineage4.3.2 | 4 |
| lineage3.1 | 4 |
| lineage5.1.1 | 1 |
| La2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.6.1.1 | 4 |
| lineage4.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.1.3 | 2 |
| La1.3 | 1 |
| La1.2 | 2 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage6 | 1 |
| lineage6.1.3 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.2 | 2 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1.1 | 3 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 347 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837642 | RR-TB | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR13861729 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR17832802 | HR-TB | lineage3 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR1791725 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19304036 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | ERR11081258 | Other | lineage4.8 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR11081257 | Other | lineage4.8 | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675236 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675311 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR3275201 | Sensitive | lineage4.8 | nl | SRR3675312 | HR-TB | lineage4 | None | ERR2027263 | Other | lineage4 | None | SRR3675383 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR176740 | HR-TB | None | ERR2229084 | Sensitive | lineage4.8 | dk | SRR3675572 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR4816466 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4818929 | HR-TB | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR2512770 | Other | lineage4.2.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | None | ERR2514535 | Sensitive | lineage3 | gb | ERR2514692 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341315 | Sensitive | None | ERR2514749 | Sensitive | lineage4.4.1.1 | gb | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341470 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693239 | HR-TB | None | ERR278594 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045817 | Sensitive | lineage4.8 | gb | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045053 | Other | None | SRR6045952 | HR-TB | None | SRR6046197 | Other | lineage4.3.3 | None | SRR6045217 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6046397 | Other | None | SRR6046299 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046492 | Other | None | SRR6325444 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6789626 | Other | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR3132168 | MDR-TB | lineage4.3.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7496509 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR323107 | Other | lineage4 | None | SRR7496517 | Other | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR323038 | HR-TB | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR037504 | Other | lineage4.9.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1035316 | MDR-TB | lineage4.3.2 | br | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1035157 | Other | lineage4.9 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR3283036 | HR-TB | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR1213913 | Sensitive | lineage4.1.2 | de | ERR1213930 | Other | lineage4.3.2 | pe | ERR3283017 | HR-TB | None | ERR1213875 | Other | lineage4.3.3 | de | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283027 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468544 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797046 | HR-TB | None | ERR3797069 | Other | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407452 | Sensitive | lineage3 | None | ERR4188350 | HR-TB | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR4407463 | HR-TB | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR473332 | Other | lineage4 | None | ERR4769427 | Other | La1.2 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4796584 | Sensitive | lineage1.2.2.2 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798504 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5336148 | Other | None | ERR702406 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736835 | HR-TB | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR8158066 | Sensitive | lineage2.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8976043 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119669 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786604 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR987722 | HR-TB | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR9896144 | Other | lineage3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173153 | HR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173400 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173778 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1173788 | Other | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR1196768 | MDR-TB | None |
|---|
