EBG00000313339 - n.2321C>T
Drug resistance types
15 Sensitive
56 RR-TB
7 HR-TB
54 MDR-TB
24 Pre-XDR-TB
0 XDR-TB
155 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 58 |
| lineage1.2.1.1 | 1 |
| lineage2.2.2 | 7 |
| lineage2.2.1 | 68 |
| lineage4.9 | 46 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.3.3 | 4 |
| lineage4.2.1 | 12 |
| lineage4.1.1.3 | 7 |
| lineage4.2.1.1 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.2.2.2 | 3 |
| lineage4.3 | 1 |
| lineage4.1.2.1;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| lineage4.4 | 2 |
| lineage4.1.1.1 | 4 |
| lineage3 | 17 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.5 | 1 |
| lineage4.7 | 2 |
| lineage4.1.2.1 | 11 |
| La1.8.1 | 3 |
| lineage1.1.1.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage5.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage4.4.2 | 4 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.8.1 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage2.2;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| lineage4.4.1.1 | 4 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.6.5 | 1 |
| lineage4.4.1.2 | 2 |
| lineage4.2.2 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| La1.6 | 1 |
| lineage4 | 1 |
| La2 | 1 |
| lineage4.3.2 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 311 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR978761 | Other | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR5818414 | Other | lineage4.9 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR6045553 | Other | lineage4.1.2.1;lineage4.9 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR3675389 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR4820030 | Other | lineage4.9 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR911929 | Other | lineage4.8 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | DRR184903 | Sensitive | lineage2.2.2 | None | SRR18002980 | Other | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR7068885 | Other | lineage3 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR18003052 | Other | lineage2.2.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502517 | Other | lineage5.1.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR10796598 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR11342648 | MDR-TB | lineage4.1.1.3 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR6044952 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR6046839 | Other | lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR7755642 | MDR-TB | lineage4.2.1 | None | ERR978752 | Other | lineage4.8 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR1173421 | Other | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR7069946 | Other | lineage4.8 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR14334195 | Other | lineage2.2.1 | None | SRR5818460 | Other | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7645927 | Other | lineage4.8 | None | ERR867567 | RR-TB | lineage3 | None | ERR978762 | Other | lineage4.8 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR978748 | Other | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR5818386 | Other | lineage4.9 | None | SRR7070293 | Other | lineage4.8 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR19304104 | Other | lineage4.8 | None | ERR3468613 | Other | La1.8.1 | None | ERR911930 | Other | lineage4.8 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002945 | Other | lineage2.2.1 | None | ERR867572 | Other | lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR3014599 | Pre-XDR-TB | lineage4.1.2.1 | tn | SRR5818464 | Other | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | DRR184629 | Other | lineage2.2.1 | None | SRR6046376 | Other | lineage3 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR2228899 | Other | lineage4.8 | None | ERR3468488 | Other | La1.8.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR5818398 | Other | lineage4.9 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR3675527 | Other | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | ERR867571 | Other | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR7069074 | Other | lineage3 | None | SRR6045384 | Other | lineage4.1.2.1 | None | SRR1062918 | Other | lineage3 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR1173833 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR1173770 | Other | lineage4.9 | None | SRR6152925 | Sensitive | lineage2.2.1 | ca | ERR5979407 | Other | lineage3 | None | SRR1173281 | Other | lineage3 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR978694 | Other | lineage4.8 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR5818422 | Other | lineage4.9 | None | SRR6045986 | Other | lineage3 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR5163959 | Other | lineage4.9 | None | ERR10796591 | Other | lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | ERR978751 | Other | lineage4.8 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1140716 | Other | lineage3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR7645928 | Other | lineage4.7 | None | ERR10796560 | Other | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR7069922 | Other | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR3675265 | Other | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR5908124 | Other | lineage4.8 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19303917 | Sensitive | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR9117759 | Other | lineage3 | None | ERR978747 | Other | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR11349201 | MDR-TB | lineage4.1.1.3 | None | ERR978735 | Other | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | DRR034348 | Other | lineage2.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR7070144 | Other | lineage4.8 | None | SRR18003023 | Other | lineage2.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | ERR4811101 | Other | lineage4.4.2 | None | SRR6044787 | Sensitive | lineage4.4 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR7068912 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR6397733 | Other | lineage4.4.1.2 | None |
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