TB-Profiler result

Run: SRR6982246

Summary

Run ID: SRR6982246

Sample name:

Date: 04-04-2023 18:31:42

Number of reads: 90801

Percentage reads mapped: 55.34

Strain: lineage4

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7824 p.Ala175Ile missense_variant 0.33
gyrA 7832 c.531G>C synonymous_variant 0.4
gyrA 7835 c.534A>G synonymous_variant 0.4
gyrA 7837 p.Gly179Ala missense_variant 0.4
gyrA 7859 c.558A>C synonymous_variant 0.33
gyrA 7865 c.564T>C synonymous_variant 0.33
gyrA 8733 p.Ile478Val missense_variant 0.5
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491591 p.Lys270Met missense_variant 1.0
rpoB 760115 c.309C>T synonymous_variant 1.0
rpoB 761027 c.1221A>G synonymous_variant 0.29
rpoB 761036 c.1230G>C synonymous_variant 0.29
rpoB 761037 c.1231T>C synonymous_variant 0.29
rpoB 761057 c.1251G>C synonymous_variant 0.62
rpoB 761064 p.Ala420Ser missense_variant 0.57
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.47
rpoB 761102 c.1296A>G synonymous_variant 0.47
rpoB 761126 c.1320G>C synonymous_variant 0.5
rpoB 761132 c.1326G>T synonymous_variant 0.5
rpoB 761133 c.1327_1329delTTGinsCTC synonymous_variant 0.5
rpoB 761150 c.1344A>T synonymous_variant 0.5
rpoB 761153 c.1347G>C synonymous_variant 0.5
rpoB 761162 c.1356G>C synonymous_variant 0.44
rpoB 761165 c.1359G>C synonymous_variant 0.4
rpoB 761168 c.1362C>G synonymous_variant 0.4
rpoB 761171 c.1365C>T synonymous_variant 0.4
rpoB 761177 c.1371G>C synonymous_variant 0.4
rpoB 761180 c.1374A>G synonymous_variant 0.4
rpoB 761189 c.1383T>G synonymous_variant 0.4
rpoB 761195 c.1389G>C synonymous_variant 0.4
rpoB 761196 p.Leu464Phe missense_variant 0.4
rpoB 761207 c.1401C>T synonymous_variant 0.33
rpoB 761555 c.1749G>C synonymous_variant 0.4
rpoB 761558 c.1752C>G synonymous_variant 0.4
rpoB 761564 c.1758G>C synonymous_variant 0.4
rpoB 761570 c.1764T>C synonymous_variant 0.4
rpoB 761579 c.1773G>C synonymous_variant 0.4
rpoB 761612 c.1806G>C synonymous_variant 0.5
rpoB 761615 c.1809A>G synonymous_variant 0.5
rpoB 761622 p.Gln606Met missense_variant 0.4
rpoB 761636 c.1830G>C synonymous_variant 0.4
rpoB 762030 p.Thr742Ser missense_variant 0.67
rpoB 762053 c.2247T>C synonymous_variant 0.67
rpoB 762057 p.Ile751Val missense_variant 0.67
rpoB 762062 c.2256T>C synonymous_variant 0.67
rpoB 762065 c.2259T>C synonymous_variant 0.67
rpoB 762068 c.2262C>T synonymous_variant 0.67
rpoB 762080 c.2274G>C synonymous_variant 0.67
rpoB 762083 c.2277T>C synonymous_variant 0.67
rpoB 762084 p.Ala760Pro missense_variant 0.67
rpoB 762101 c.2295C>G synonymous_variant 0.6
rpoB 762114 p.Ile770Val missense_variant 0.6
rpoB 762122 p.Asp772Glu missense_variant 0.75
rpoB 762128 c.2322G>C synonymous_variant 0.75
rpoB 762140 c.2334G>C synonymous_variant 0.75
rpoB 762143 c.2337T>C synonymous_variant 0.75
rpoB 762149 c.2343G>C synonymous_variant 0.75
rpoB 762156 p.Val784Ile missense_variant 0.75
rpoB 762176 c.2370T>C synonymous_variant 0.6
rpoB 762177 p.Arg791Asp missense_variant 0.5
rpoB 762181 p.Asp792Ala missense_variant 0.5
rpoB 762185 c.2379G>C synonymous_variant 0.5
rpoB 762209 c.2403C>G synonymous_variant 0.5
rpoB 762212 c.2406G>C synonymous_variant 0.5
rpoB 762233 c.2427G>C synonymous_variant 0.5
rpoB 762245 c.2439G>C synonymous_variant 0.5
rpoB 762251 c.2445G>C synonymous_variant 0.5
rpoB 762254 c.2448T>C synonymous_variant 0.5
rpoB 762257 c.2451C>G synonymous_variant 0.5
rpoB 762266 c.2460T>C synonymous_variant 0.5
rpoB 762275 c.2469C>G synonymous_variant 0.5
rpoB 762284 c.2478G>C synonymous_variant 0.5
rpoB 762909 p.Ile1035Leu missense_variant 0.22
rpoC 762917 c.-453C>G upstream_gene_variant 0.3
rpoC 762923 c.-447C>G upstream_gene_variant 0.3
rpoC 762929 c.-441G>T upstream_gene_variant 0.3
rpoC 762962 c.-408C>T upstream_gene_variant 0.25
rpoC 762971 c.-399G>C upstream_gene_variant 0.27
rpoC 762983 c.-387C>T upstream_gene_variant 0.27
rpoC 762989 c.-381G>C upstream_gene_variant 0.27
rpoC 762995 c.-375G>T upstream_gene_variant 0.27
rpoB 763005 p.Cys1067Val missense_variant 0.27
rpoC 763013 c.-357C>G upstream_gene_variant 0.3
rpoB 763014 p.Met1070Leu missense_variant 0.3
rpoB 763017 p.Gln1071Glu missense_variant 0.3
rpoC 763022 c.-348C>T upstream_gene_variant 0.3
rpoC 763028 c.-342T>C upstream_gene_variant 0.3
rpoC 763031 c.-339T>C upstream_gene_variant 0.3
rpoC 763034 c.-336C>G upstream_gene_variant 0.25
rpoB 763038 p.Thr1078Ala missense_variant 0.25
rpoC 763043 c.-327G>C upstream_gene_variant 0.27
rpoC 763053 c.-317T>C upstream_gene_variant 0.27
rpoC 763058 c.-312C>G upstream_gene_variant 0.27
rpoC 763070 c.-300T>C upstream_gene_variant 0.27
rpoC 763085 c.-285C>T upstream_gene_variant 0.3
rpoC 763088 c.-282C>G upstream_gene_variant 0.3
rpoC 763094 c.-276G>C upstream_gene_variant 0.3
rpoC 763103 c.-267G>C upstream_gene_variant 0.27
rpoC 763115 c.-255T>C upstream_gene_variant 0.33
rpoC 764498 p.Ser377Ala missense_variant 0.43
rpoC 764503 c.1134G>C synonymous_variant 0.43
rpoC 764512 c.1143G>C synonymous_variant 0.43
rpoC 764521 c.1152T>C synonymous_variant 0.43
rpoC 764536 c.1167G>C synonymous_variant 0.5
rpoC 764545 c.1176C>G synonymous_variant 0.43
rpoC 764548 c.1179G>C synonymous_variant 0.43
rpoC 764551 c.1182G>C synonymous_variant 0.43
rpoC 764566 c.1197C>G synonymous_variant 0.5
rpoC 764575 c.1206T>C synonymous_variant 0.5
rpoC 764581 c.1212T>C synonymous_variant 0.5
rpoC 764582 p.Leu405Met missense_variant 0.5
rpoC 764605 c.1236G>C synonymous_variant 0.43
rpoC 764611 c.1242G>C synonymous_variant 0.43
rpoC 764620 c.1251G>C synonymous_variant 0.43
rpoC 764635 c.1266C>G synonymous_variant 0.43
rpoC 764668 c.1299C>T synonymous_variant 0.4
rpoC 764722 c.1353G>C synonymous_variant 0.18
rpoC 764746 c.1377G>C synonymous_variant 0.2
rpoC 764937 p.Gln523Pro missense_variant 0.18
rpoC 765150 p.Gly594Glu missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776659 p.Asp608Asn missense_variant 1.0
mmpL5 777690 p.Asn264Ser missense_variant 0.29
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 0.44
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.41
rrs 1472107 n.262A>G non_coding_transcript_exon_variant 0.41
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.41
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.41
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.41
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.5
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.5
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.48
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.61
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.56
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.57
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.57
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.57
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.57
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.57
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.54
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.57
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.57
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.57
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.56
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.59
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.69
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.68
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.59
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.53
rrs 1472425 n.580T>C non_coding_transcript_exon_variant 0.53
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.55
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.52
rrs 1472437 n.592T>G non_coding_transcript_exon_variant 0.52
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.52
rrs 1472446 n.601T>G non_coding_transcript_exon_variant 0.52
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.52
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.52
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.52
rrs 1472460 n.615T>C non_coding_transcript_exon_variant 0.5
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.5
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.52
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.5
rrs 1472466 n.621C>T non_coding_transcript_exon_variant 0.5
rrs 1472467 n.622G>C non_coding_transcript_exon_variant 0.5
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.5
rrs 1472473 n.628G>T non_coding_transcript_exon_variant 0.52
rrs 1472486 n.641A>G non_coding_transcript_exon_variant 0.62
rrs 1472494 n.649A>T non_coding_transcript_exon_variant 0.66
rrs 1472496 n.651T>G non_coding_transcript_exon_variant 0.66
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.66
rrs 1472507 n.662C>T non_coding_transcript_exon_variant 0.7
rrs 1472508 n.663T>C non_coding_transcript_exon_variant 0.7
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.73
rrs 1472571 n.726G>A non_coding_transcript_exon_variant 0.7
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.68
rrs 1472583 n.738T>A non_coding_transcript_exon_variant 0.68
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.68
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.75
rrs 1472673 n.828T>C non_coding_transcript_exon_variant 0.71
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.71
rrs 1472675 n.830T>A non_coding_transcript_exon_variant 0.71
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.71
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.71
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.77
rrs 1472793 n.948A>C non_coding_transcript_exon_variant 0.71
rrs 1472803 n.958T>C non_coding_transcript_exon_variant 0.7
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.69
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.69
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.69
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 0.7
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.67
rrs 1472845 n.1000G>A non_coding_transcript_exon_variant 0.15
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 0.5
rrs 1472849 n.1005delT non_coding_transcript_exon_variant 0.58
rrs 1472856 n.1012_1015delAGGC non_coding_transcript_exon_variant 0.61
rrs 1472862 n.1017T>G non_coding_transcript_exon_variant 0.61
rrs 1472863 n.1018_1019insGCCC non_coding_transcript_exon_variant 0.61
rrs 1472873 n.1028C>T non_coding_transcript_exon_variant 0.72
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 0.8
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 0.74
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.76
rrs 1472958 n.1113A>G non_coding_transcript_exon_variant 0.74
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.71
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.71
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.71
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.71
rrs 1472988 n.1143T>C non_coding_transcript_exon_variant 0.71
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.81
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.82
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.82
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.83
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.83
rrs 1473062 n.1217T>G non_coding_transcript_exon_variant 0.86
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.86
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.85
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 0.85
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.85
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.14
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.8
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.83
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 0.83
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.83
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.83
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.85
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.83
rrs 1473201 n.1356A>T non_coding_transcript_exon_variant 0.79
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.68
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.72
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.76
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.73
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.58
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.55
rrl 1474201 n.544T>A non_coding_transcript_exon_variant 0.15
rrl 1474232 n.575C>G non_coding_transcript_exon_variant 0.23
rrl 1474239 n.582G>C non_coding_transcript_exon_variant 0.23
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.23
rrl 1474450 n.793T>C non_coding_transcript_exon_variant 0.15
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 0.29
rrl 1474476 n.819C>G non_coding_transcript_exon_variant 0.35
rrl 1474483 n.826C>G non_coding_transcript_exon_variant 0.33
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.33
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.24
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.24
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.24
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.25
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.25
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.25
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.27
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.27
rrl 1474528 n.871T>A non_coding_transcript_exon_variant 0.27
rrl 1474529 n.872A>G non_coding_transcript_exon_variant 0.27
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.27
rrl 1474540 n.883T>C non_coding_transcript_exon_variant 0.27
rrl 1474541 n.884G>T non_coding_transcript_exon_variant 0.27
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.27
rrl 1474551 n.894G>C non_coding_transcript_exon_variant 0.41
rrl 1474558 n.901G>T non_coding_transcript_exon_variant 0.44
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.58
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 0.58
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.56
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.56
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.56
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.56
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.56
rrl 1474651 n.995delT non_coding_transcript_exon_variant 0.67
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.7
rrl 1474662 n.1005C>G non_coding_transcript_exon_variant 0.69
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.71
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.71
rrl 1474688 n.1031G>C non_coding_transcript_exon_variant 0.73
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.73
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 0.77
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 0.8
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.85
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.83
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.83
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.8
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.8
rrl 1474777 n.1120T>G non_coding_transcript_exon_variant 0.79
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.81
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.81
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.81
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.81
rrl 1474801 n.1144G>A non_coding_transcript_exon_variant 0.84
rrl 1474802 n.1145T>C non_coding_transcript_exon_variant 0.84
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.71
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.7
rrl 1474896 n.1239A>T non_coding_transcript_exon_variant 0.56
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.36
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.36
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.36
rrl 1475324 n.1667G>A non_coding_transcript_exon_variant 0.25
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.2
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.38
rrl 1475532 n.1875A>G non_coding_transcript_exon_variant 0.38
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.45
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 0.45
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.45
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.45
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.5
rrl 1475601 n.1945_1947delGGA non_coding_transcript_exon_variant 0.5
rrl 1475607 n.1950A>G non_coding_transcript_exon_variant 0.5
rrl 1475609 n.1952_1953insTG non_coding_transcript_exon_variant 0.5
rrl 1475614 n.1957A>T non_coding_transcript_exon_variant 0.44
rrl 1475615 n.1958C>G non_coding_transcript_exon_variant 0.38
rrl 1475617 n.1960C>G non_coding_transcript_exon_variant 0.38
rrl 1475618 n.1961C>T non_coding_transcript_exon_variant 0.43
rrl 1475624 n.1967G>A non_coding_transcript_exon_variant 0.43
rrl 1475625 n.1968G>C non_coding_transcript_exon_variant 0.43
rrl 1475627 n.1970G>C non_coding_transcript_exon_variant 0.6
rrl 1475628 n.1971G>T non_coding_transcript_exon_variant 0.6
rrl 1475633 n.1976G>T non_coding_transcript_exon_variant 0.67
rrl 1475636 n.1979A>G non_coding_transcript_exon_variant 0.67
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 0.67
rrl 1475639 n.1982C>T non_coding_transcript_exon_variant 0.67
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.67
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.67
rrl 1475655 n.1998T>C non_coding_transcript_exon_variant 0.67
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.62
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 0.71
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.71
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 0.71
rrl 1475740 n.2083G>C non_coding_transcript_exon_variant 0.71
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.68
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.64
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.62
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.62
rrl 1475760 n.2103_2104insACATTT non_coding_transcript_exon_variant 0.62
rrl 1475763 n.2106C>G non_coding_transcript_exon_variant 0.62
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.62
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.62
rrl 1475766 n.2109G>T non_coding_transcript_exon_variant 0.62
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.68
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.71
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.75
rrl 1475788 n.2131C>G non_coding_transcript_exon_variant 0.73
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.79
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.78
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.76
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.76
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.78
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.79
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.79
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.79
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.76
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.74
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.74
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 0.76
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.76
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.79
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.79
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.6
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.5
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.5
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.5
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.5
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.5
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.5
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.46
rrl 1476058 n.2401T>C non_coding_transcript_exon_variant 0.46
rrl 1476076 n.2419A>G non_coding_transcript_exon_variant 0.46
rrl 1476081 n.2424A>G non_coding_transcript_exon_variant 0.42
rrl 1476082 n.2425T>C non_coding_transcript_exon_variant 0.42
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.42
rrl 1476087 n.2430C>T non_coding_transcript_exon_variant 0.42
rrl 1476088 n.2431A>G non_coding_transcript_exon_variant 0.45
rrl 1476097 n.2440C>G non_coding_transcript_exon_variant 0.5
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 0.5
rrl 1476100 n.2443A>T non_coding_transcript_exon_variant 0.5
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 0.5
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 0.5
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.5
rrl 1476113 n.2456T>A non_coding_transcript_exon_variant 0.56
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.56
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 0.67
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 0.73
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.73
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.8
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.8
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.84
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.83
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.83
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.83
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.83
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.84
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.86
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.87
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.87
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.87
rrl 1476255 n.2598A>G non_coding_transcript_exon_variant 0.87
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.87
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.87
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.86
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.86
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.86
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.86
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 0.86
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 0.86
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.86
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.86
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.83
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.83
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.83
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.82
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.79
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.8
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.7
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.58
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.58
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.58
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.58
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.58
rrl 1476530 n.2873C>A non_coding_transcript_exon_variant 0.58
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.55
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.58
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.58
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.58
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.36
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.31
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.27
rrl 1476596 n.2939C>T non_coding_transcript_exon_variant 0.29
rrl 1476601 n.2944G>A non_coding_transcript_exon_variant 0.29
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.14
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.14
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.14
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 0.14
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.14
rrl 1476628 n.2971T>G non_coding_transcript_exon_variant 0.14
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.14
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.15
rrl 1476723 n.3066T>A non_coding_transcript_exon_variant 0.25
rpsA 1833697 c.156C>G synonymous_variant 0.33
rpsA 1833706 c.165C>T synonymous_variant 0.43
rpsA 1833709 c.168C>T synonymous_variant 0.38
rpsA 1833733 c.192C>G synonymous_variant 0.55
rpsA 1833734 p.Ala65Ser missense_variant 0.55
rpsA 1833742 c.201A>G synonymous_variant 0.6
rpsA 1833745 c.204G>C synonymous_variant 0.6
rpsA 1833748 c.207C>G synonymous_variant 0.6
rpsA 1833781 c.240T>C synonymous_variant 0.6
rpsA 1833782 p.Ser81Ala missense_variant 0.6
rpsA 1833790 c.249T>C synonymous_variant 0.6
rpsA 1833797 p.Val86Ile missense_variant 0.6
rpsA 1833802 c.261A>G synonymous_variant 0.6
rpsA 1833811 c.270G>T synonymous_variant 0.44
rpsA 1833815 p.Thr92Gln missense_variant 0.44
rpsA 1833829 c.288A>G synonymous_variant 0.4
rpsA 1833832 c.291G>A synonymous_variant 0.4
rpsA 1833838 c.297G>C synonymous_variant 0.44
rpsA 1833841 c.300C>G synonymous_variant 0.44
rpsA 1833847 c.306C>G synonymous_variant 0.44
rpsA 1833856 c.315A>G synonymous_variant 0.44
rpsA 1833862 c.321G>T synonymous_variant 0.44
rpsA 1833886 c.345C>G synonymous_variant 0.38
rpsA 1833997 c.456G>C synonymous_variant 0.25
rpsA 1834000 c.459G>C synonymous_variant 0.25
rpsA 1834012 c.471G>C synonymous_variant 0.29
rpsA 1834015 c.474G>C synonymous_variant 0.29
rpsA 1834024 c.483G>C synonymous_variant 0.22
rpsA 1834034 p.Ile165Val missense_variant 0.22
rpsA 1834046 p.Ile169Leu missense_variant 0.22
rpsA 1834093 c.552G>C synonymous_variant 0.3
rpsA 1834102 c.561T>C synonymous_variant 0.38
rpsA 1834105 c.564C>T synonymous_variant 0.29
rpsA 1834246 c.705G>C synonymous_variant 0.25
rpsA 1834249 c.708T>C synonymous_variant 0.25
rpsA 1834261 c.720A>G synonymous_variant 0.25
rpsA 1834264 c.723G>C synonymous_variant 0.25
rpsA 1834294 c.753G>T synonymous_variant 0.25
rpsA 1834298 p.Gln253Glu missense_variant 0.25
rpsA 1834303 c.762T>C synonymous_variant 0.25
rpsA 1834306 c.765T>C synonymous_variant 0.25
rpsA 1834307 p.Asp256Gln missense_variant 0.25
rpsA 1834312 c.771G>A synonymous_variant 0.29
rpsA 1834327 c.786G>C synonymous_variant 0.67
rpsA 1834348 c.807T>C synonymous_variant 0.67
rpsA 1834354 c.813G>T synonymous_variant 0.67
rpsA 1834357 c.816T>C synonymous_variant 0.67
rpsA 1834360 c.819G>C synonymous_variant 0.67
rpsA 1834361 c.820T>C synonymous_variant 0.67
rpsA 1834366 c.825A>G synonymous_variant 0.67
rpsA 1834369 c.828C>G synonymous_variant 0.67
rpsA 1834378 c.837T>C synonymous_variant 0.67
rpsA 1834395 p.Arg285Gln missense_variant 0.67
rpsA 1834399 p.His286Gln missense_variant 0.67
rpsA 1834408 c.867C>G synonymous_variant 0.67
rpsA 1834411 c.870T>G synonymous_variant 0.73
rpsA 1834415 p.Ala292Gln missense_variant 0.73
rpsA 1834423 c.882G>C synonymous_variant 0.73
rpsA 1834427 p.Ile296Val missense_variant 0.73
rpsA 1834432 c.891G>T synonymous_variant 0.73
rpsA 1834435 c.894G>C synonymous_variant 0.73
rpsA 1834451 c.910_912delTTGinsCTC synonymous_variant 0.7
rpsA 1834459 c.918G>C synonymous_variant 0.6
rpsA 1834465 c.924T>C synonymous_variant 0.6
rpsA 1834468 c.927A>G synonymous_variant 0.6
rpsA 1834483 p.Glu314Asp missense_variant 0.54
rpsA 1834489 c.948T>C synonymous_variant 0.5
rpsA 1834498 c.957C>T synonymous_variant 0.43
rpsA 1834503 p.Val321Ala missense_variant 0.13
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1917981 c.42G>A synonymous_variant 1.0
ndh 2103174 c.-132G>C upstream_gene_variant 0.33
PPE35 2168501 p.Phe704Leu missense_variant 1.0
PPE35 2170762 c.-150C>T upstream_gene_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518076 c.-39C>T upstream_gene_variant 1.0
eis 2715231 c.102C>T synonymous_variant 0.29
folC 2746629 p.Asp324Asn missense_variant 0.67
Rv2752c 3066229 c.-38T>G upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
alr 3841250 c.171C>T synonymous_variant 0.18
clpC1 4039622 c.1083C>T synonymous_variant 0.5
clpC1 4039647 p.Glu353Pro missense_variant 0.5
clpC1 4039651 p.Val352Leu missense_variant 0.5
clpC1 4039654 p.Thr351Ser missense_variant 0.5
clpC1 4039655 c.1050G>C synonymous_variant 0.5
clpC1 4039661 p.Gly348Ala missense_variant 0.5
clpC1 4039664 c.1041G>C synonymous_variant 0.5
clpC1 4039670 p.Val345Ile missense_variant 0.67
clpC1 4039673 c.1032G>C synonymous_variant 0.67
clpC1 4039709 p.Ile332Leu missense_variant 0.4
clpC1 4039714 p.Tyr331His missense_variant 0.4
clpC1 4039724 c.981A>G synonymous_variant 0.4
clpC1 4039733 c.972G>C synonymous_variant 0.4
clpC1 4039739 c.966C>G synonymous_variant 0.4
clpC1 4039742 c.963C>T synonymous_variant 0.4
clpC1 4039751 c.954A>G synonymous_variant 0.4
clpC1 4039754 c.951G>C synonymous_variant 0.4
clpC1 4039757 c.948A>G synonymous_variant 0.4
clpC1 4039766 c.939T>C synonymous_variant 0.33
clpC1 4039773 p.Lys311Met missense_variant 0.33
clpC1 4039778 c.927A>G synonymous_variant 0.33
clpC1 4039781 c.924G>C synonymous_variant 0.33
clpC1 4039817 c.888A>C synonymous_variant 0.5
clpC1 4039820 c.885T>G synonymous_variant 0.5
clpC1 4039823 c.882T>C synonymous_variant 0.5
clpC1 4039829 c.874_876delTTGinsCTC synonymous_variant 0.5
clpC1 4039832 c.873C>G synonymous_variant 0.43
clpC1 4039850 c.855T>C synonymous_variant 0.43
clpC1 4039858 p.Ile283Val missense_variant 0.43
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242803 p.Val981Leu missense_variant 1.0
embB 4247121 p.Ser203Leu missense_variant 1.0
embB 4248651 p.Phe713Ser missense_variant 0.25
aftB 4267094 c.1742delC frameshift_variant 0.67
whiB6 4338595 c.-75delG upstream_gene_variant 1.0