Rv0667 - c.1320G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
9 Sensitive
26 RR-TB
15 HR-TB
13 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
13 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 29 |
| lineage3 | 4 |
| 2 | |
| lineage1.1.1 | 2 |
| lineage1.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| La1.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.1 | 1 |
| lineage2.2.1 | 9 |
| La1.6 | 1 |
| lineage4.4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.8 | 3 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.4 | 1 |
| lineage4.9.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.7 | 1 |
| lineage4.2.2.2 | 1 |
| La1.8.1 | 2 |
| lineage4.3.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage3.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 83 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819863 | RR-TB | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4817069 | RR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR3324368 | RR-TB | lineage1.1.2 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769436 | Other | La1.3 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR369151 | Other | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR176741 | Other | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11462861 | Other | La1.8.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR3468488 | Other | La1.8.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None |
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